Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007143

Physical Location & Seq

Genomic Coordinates Forward (+)

13123637 .. 13124497

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G099900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTTGATCTTGTAGGTGCCCTCTTTGGATCAAGCACCAAGTTCAAGGTCTTAACCACATCCCAACTCAAAAACTCAACTACCCTTTTCCAAAACTACACCGTTTTGGAAGCTCCCAAGGAGATCTTGGCTCCTAAAATGATTGGATGCCACACCATGCCTTACCCTTATGCAGTTTTCTATTGCCATAGCCAAGAAAGTGAGAACAGGCTGTATCAAGTTTTGCTTGGTGGTGAGAATGGAGAGAGAGTTGAAGCTGCTGCTGTTTGCCACTTTGATACTTCTCAGTGGGACCCTAGCCATGCGGCATTCAGTGTGCTTGATGGTCAACCTGGGAGCTCCCCTGTCTGCCATTTCTTTCCTGCTGATAATCTTGTTTGGGTGCCACTGCCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000325 GO:0000326 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009791 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

133

Amino Acids

14.52

Weight (kDa)

5.37

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49320
fragaria_vesca	FvH4_2g08510 FvH4_2g08530
malus_domestica	MD05G1068000.v1.1 MD10G1077900.v1.1 MD10G1078000.v1.1
prunus_persica	Prupe.8G098700_v2.0.a1 Prupe.8G098900_v2.0.a1 Prupe.8G099700_v2.0.a1 Prupe.8G099900_v2.0.a1
pyrus_communis	pycom05g05900 pycom10g06110 pycom10g06130 pycom289g00010
rosa_chinensis	RchiOBHm_Chr6g0263891
rosa_laevigata	RLG00000014306
rosa_multiflora	Rmu_sc0002112.1_g000012
rosa_roxburghii	Rroxscaffold_176G00431280 Rroxscaffold_7G00203800
rosa_rugosa	Rorug06G0006700
rosa_samantha	Rh6AG126700 Rh6BG123000 Rh6CG121400 Rh6DG108900
rosa_wichuraiana	Rw6G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	17, 382
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	46, 254
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	4 cut(s)	113, 257, 339, 395
AluI	AGCT	4 cut(s)	113, 257, 339, 395
Alw21I	GWGCWC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	37
ApeKI	GCWGC	2 cut(s)	257, 260
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	22
BanI	GGYRCC	2 cut(s)	17, 382
BanII	GRGCYC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	341
BbvI	GCAGC	2 cut(s)	244, 247
BccI	CCATC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	333
BfaI	CTAG	1 cut(s)	297
BglII	AGATCT	1 cut(s)	123
BisI	GCNGC	3 cut(s)	258, 261, 306
BlsI	GCNGC	3 cut(s)	259, 262, 307
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	5 cut(s)	19, 132, 293, 294, 384
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	117, 332
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	2 cut(s)	117, 332
BseGI	GGATG	2 cut(s)	59, 152
BseMII	CTCAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	244, 247
BshNI	GGYRCC	2 cut(s)	17, 382
BsiHKAI	GWGCWC	1 cut(s)	341
BslFI	GGGAC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	305
BsmI	GAATGC	1 cut(s)	308
Bsp1286I	GDGCHC	2 cut(s)	22, 341
Bsp143I	GATC	3 cut(s)	7, 29, 123
BspACI	CCGC	1 cut(s)	305
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	5 cut(s)	19, 132, 293, 294, 384
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	2 cut(s)	17, 382
BssECI	CCNNGG	2 cut(s)	117, 332
BssMI	GATC	3 cut(s)	7, 29, 123
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	59, 152
BstKTI	GATC	3 cut(s)	10, 32, 126
BstMBI	GATC	3 cut(s)	7, 29, 123
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	244, 247
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	59, 152
BtsI	GCAGTG	1 cut(s)	386
BtsIMutI	CAGTG	3 cut(s)	293, 319, 386
Cac8I	GCNNGC	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	292
CviAII	CATG	2 cut(s)	157, 302
CviJI	RGCY	8 cut(s)	113, 131, 192, 211, 257, 300, 339, 395
CviKI_1	RGCY	8 cut(s)	113, 131, 192, 211, 257, 300, 339, 395
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	3 cut(s)	9, 31, 125
DpnII	GATC	3 cut(s)	7, 29, 123
Ecl136II	GAGCTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	339
EcoICRI	GAGCTC	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	2 cut(s)	160, 305
FaiI	YATR	4 cut(s)	158, 171, 189, 303
FalI	AAGNNNNNCTT	4 cut(s)	110, 142, 210, 242
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	2 cut(s)	156, 301
Fnu4HI	GCNGC	3 cut(s)	258, 261, 306
FokI	GGATG	2 cut(s)	46, 159
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	3 cut(s)	258, 261, 306
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	3 cut(s)	258, 261, 306
Hin1II	CATG	2 cut(s)	160, 305
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	329
Hpy8I	GTNNAC	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	160, 305
KflI	GGGWCCC	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	7, 29, 123
LmnI	GCTCC	4 cut(s)	118, 136, 336, 344
LpnPI	CCDG	5 cut(s)	193, 318, 345, 357, 375
Lsp1109I	GCAGC	2 cut(s)	244, 247
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	297
MalI	GATC	3 cut(s)	9, 31, 125
MboI	GATC	3 cut(s)	7, 29, 123
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	2 cut(s)	22, 341
MnlI	CCTC	1 cut(s)	32
MseI	TTAA	2 cut(s)	53, 397
MspR9I	CCNGG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	333
NdeII	GATC	3 cut(s)	7, 29, 123
NlaIII	CATG	2 cut(s)	160, 305
NlaIV	GGNNCC	5 cut(s)	19, 132, 293, 294, 384
PctI	GAATGC	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	259, 262, 307
PpuMI	RGGWCCY	1 cut(s)	292
Psp124BI	GAGCTC	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	5 cut(s)	19, 132, 293, 294, 384
PspPI	GGNCC	1 cut(s)	292
PspPPI	RGGWCCY	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	53, 397
SatI	GCNGC	3 cut(s)	258, 261, 306
Sau3AI	GATC	3 cut(s)	7, 29, 123
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	2 cut(s)	22, 341
SetI	ASST	7 cut(s)	19, 51, 115, 259, 334, 341, 397
SfaNI	GCATC	1 cut(s)	137
SinI	GGWCC	1 cut(s)	292
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	103
TauI	GCSGC	1 cut(s)	308
Tru1I	TTAA	2 cut(s)	53, 397
Tru9I	TTAA	2 cut(s)	53, 397
TscAI	CASTG	3 cut(s)	293, 319, 393
TseI	GCWGC	2 cut(s)	257, 260
TspRI	CASTG	3 cut(s)	293, 319, 393
VpaK11BI	GGWCC	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.