Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002112.1

Orthogroup ID

OG0007143

Physical Location & Seq

Genomic Coordinates Reverse (-)

38951 .. 40051

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002112.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgggttcaagtcttgctttctggtgccccttacttcatcttcttctactagtgctggttatgtgtgctcaaggaattgcgggcaggaagctgactgaggaacagctggaaacaacacacaaattgatgaagcctatggatcaaagaattcaagctcatcattcatcatcccacatggatcacatggacccttcacatatgattttcttcaccatcaaggacttgaaagttgggaaaacaatgccaatctatttccgaaaaagagacccttcaaaatctcctcgctttataccaagatctcaagctgattcaattcctttctcatcaaaacaactcccccacctccttgagttcttctctttctccaaagattctcaccaagccaaagccatggaagacactattgggcaatgtgagattgaacccatcaaaggagaaaccaagttctgtcccacttccttagaatccatgctggatttcactcgtagtatgttgggaccaaacacccgtttcactgctgtagccactgcccatctcacaaattcaactaccctgttccagaattataccattttgaaagagcctaaagagatctttgctccaaagatggtggcatgtcacaatatgccttacccttatgcagttttctattgccatagccaacaaagtgtgaacaaggtgtacaaagttgaattagggggtgaagatggagatagagttgacgctgttgctgtctgccacttggatacttctgattggagccctgatcatgcatcgttcagtgtgctcaggatcaagcctgggacttctcctgtgtgccatttctttcctgctgataatcttgtatgggttccaacatcaacctcagtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

290

Amino Acids

32.72

Weight (kDa)

7.24

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49320
fragaria_vesca	FvH4_2g08510 FvH4_2g08530
malus_domestica	MD05G1068000.v1.1 MD10G1077900.v1.1 MD10G1078000.v1.1
prunus_persica	Prupe.8G098700_v2.0.a1 Prupe.8G098900_v2.0.a1 Prupe.8G099700_v2.0.a1 Prupe.8G099900_v2.0.a1
pyrus_communis	pycom05g05900 pycom10g06110 pycom10g06130 pycom289g00010
rosa_chinensis	RchiOBHm_Chr6g0263891
rosa_laevigata	RLG00000014306
rosa_multiflora	Rmu_sc0002112.1_g000012
rosa_roxburghii	Rroxscaffold_176G00431280 Rroxscaffold_7G00203800
rosa_rugosa	Rorug06G0006700
rosa_samantha	Rh6AG126700 Rh6BG123000 Rh6CG121400 Rh6DG108900
rosa_wichuraiana	Rw6G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	24
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	3 cut(s)	147, 186, 800
AcsI	RAATTY	2 cut(s)	147, 541
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	1 cut(s)	431
AgsI	TTSAA	9 cut(s)	9, 152, 226, 273, 312, 422, 546, 577, 692
AhlI	ACTAGT	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	799
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	4 cut(s)	91, 106, 155, 305
AluI	AGCT	4 cut(s)	91, 106, 155, 305
Alw21I	GWGCWC	2 cut(s)	70, 789
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	3 cut(s)	147, 186, 800
ApoI	RAATTY	2 cut(s)	147, 541
AspS9I	GGNCC	2 cut(s)	187, 497
AsuHPI	GGTGA	3 cut(s)	202, 368, 713
AvaII	GGWCC	2 cut(s)	187, 497
BaeGI	GKGCMC	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	764
BbsI	GAAGAC	1 cut(s)	402
Bbv12I	GWGCWC	2 cut(s)	70, 789
BccI	CCATC	5 cut(s)	221, 434, 540, 601, 701
BciT130I	CCWGG	1 cut(s)	801
BciVI	GTATCC	1 cut(s)	739
BclI	TGATCA	1 cut(s)	766
BcoDI	GTCTC	1 cut(s)	258
BcuI	ACTAGT	1 cut(s)	49
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	519
BfuI	GTATCC	1 cut(s)	739
BglII	AGATCT	2 cut(s)	296, 591
Bme1390I	CCNGG	1 cut(s)	801
Bme18I	GGWCC	2 cut(s)	187, 497
BmgT120I	GGNCC	2 cut(s)	187, 497
BmiI	GGNNCC	5 cut(s)	26, 189, 498, 761, 852
BmrFI	CCNGG	1 cut(s)	801
BmsI	GCATC	1 cut(s)	782
BpiI	GAAGAC	1 cut(s)	402
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
Bpu10I	CCTNAGC	1 cut(s)	788
BpuEI	CTTGAG	3 cut(s)	54, 285, 368
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	390, 800
BsaXI	ACNNNNNCTCC	2 cut(s)	702, 732
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse3DI	GCAATG	1 cut(s)	416
BseBI	CCWGG	1 cut(s)	801
BseDI	CCNNGG	2 cut(s)	390, 800
BseGI	GGATG	1 cut(s)	167
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	416
BseMII	CTCAG	2 cut(s)	87, 802
BseRI	GAGGAG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	24
BsiHKAI	GWGCWC	2 cut(s)	70, 789
BslFI	GGGAC	3 cut(s)	435, 510, 817
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	1 cut(s)	258
BsmFI	GGGAC	3 cut(s)	435, 510, 817
Bso31I	GGTCTC	1 cut(s)	258
Bsp1286I	GDGCHC	4 cut(s)	29, 70, 764, 789
Bsp1407I	TGTACA	1 cut(s)	681
Bsp143I	GATC	6 cut(s)	139, 178, 296, 591, 766, 792
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	1 cut(s)	80
BspCNI	CTCAG	2 cut(s)	88, 801
BspLI	GGNNCC	5 cut(s)	26, 189, 498, 761, 852
BspPI	GGATC	3 cut(s)	147, 186, 800
BspT107I	GGYRCC	1 cut(s)	24
BspTNI	GGTCTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	416
BsrGI	TGTACA	1 cut(s)	681
BssECI	CCNNGG	2 cut(s)	390, 800
BssMI	GATC	6 cut(s)	139, 178, 296, 591, 766, 792
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	801
BstAUI	TGTACA	1 cut(s)	681
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	4 cut(s)	96, 460, 788, 865
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	167
BstKTI	GATC	6 cut(s)	142, 181, 299, 594, 769, 795
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	6 cut(s)	139, 178, 296, 591, 766, 792
BstNI	CCWGG	1 cut(s)	801
BstNSI	RCATGY	1 cut(s)	618
BstSCI	CCNGG	1 cut(s)	799
BstSFI	CTRYAG	1 cut(s)	519
BstSLI	GKGCMC	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	2 cut(s)	296, 591
BstXI	CCANNNNNNTGG	1 cut(s)	391
BstYI	RGATCY	2 cut(s)	296, 591
BsuI	GTATCC	1 cut(s)	739
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	167
BtsI	GCAGTG	2 cut(s)	513, 525
BtsIMutI	CAGTG	4 cut(s)	513, 525, 787, 873
Cac8I	GCNNGC	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	187, 497
CseI	GACGC	1 cut(s)	731
Csp6I	GTAC	1 cut(s)	682
CspCI	CAANNNNNGTGG	2 cut(s)	591, 626
CviAII	CATG	6 cut(s)	175, 184, 391, 469, 615, 770
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	4 cut(s)	96, 460, 788, 865
DpnI	GATC	6 cut(s)	141, 180, 298, 593, 768, 794
DpnII	GATC	6 cut(s)	139, 178, 296, 591, 766, 792
Eco130I	CCWWGG	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	764
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	187, 497
EcoRI	GAATTC	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	799
EcoT14I	CCWWGG	1 cut(s)	390
EcoT22I	ATGCAT	1 cut(s)	775
EcoT38I	GRGCYC	1 cut(s)	764
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	6 cut(s)	178, 187, 394, 472, 618, 773
FalI	AAGNNNNNCTT	3 cut(s)	33, 253, 285
FaqI	GGGAC	3 cut(s)	435, 510, 817
FatI	CATG	6 cut(s)	174, 183, 390, 468, 614, 769
FauI	CCCGC	1 cut(s)	73
FauNDI	CATATG	1 cut(s)	198
FbaI	TGATCA	1 cut(s)	766
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	764
FspBI	CTAG	1 cut(s)	50
HgaI	GACGC	1 cut(s)	731
Hin1II	CATG	6 cut(s)	178, 187, 394, 472, 618, 773
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HinfI	GANTC	3 cut(s)	308, 371, 464
HphI	GGTGA	3 cut(s)	202, 368, 713
Hpy166II	GTNNAC	3 cut(s)	673, 682, 721
Hpy188I	TCNGA	2 cut(s)	257, 754
Hpy188III	TCNNGA	2 cut(s)	559, 790
Hpy8I	GTNNAC	3 cut(s)	673, 682, 721
HpyAV	CCTTC	2 cut(s)	201, 279
HpyCH4V	TGCA	2 cut(s)	641, 773
HpyF3I	CTNAG	4 cut(s)	96, 460, 788, 865
Hsp92II	CATG	6 cut(s)	178, 187, 394, 472, 618, 773
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	6 cut(s)	139, 178, 296, 591, 766, 792
LmnI	GCTCC	2 cut(s)	604, 759
LweI	GCATC	1 cut(s)	782
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	617
MalI	GATC	6 cut(s)	141, 180, 298, 593, 768, 794
MboI	GATC	6 cut(s)	139, 178, 296, 591, 766, 792
MboII	GAAGA	6 cut(s)	32, 35, 199, 346, 407, 716
MflI	RGATCY	2 cut(s)	296, 591
MhlI	GDGCHC	4 cut(s)	29, 70, 764, 789
MluCI	AATT	7 cut(s)	75, 122, 147, 312, 541, 562, 692
MnlI	CCTC	3 cut(s)	91, 291, 353
Mph1103I	ATGCAT	1 cut(s)	775
MspA1I	CMGCKG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	801
MvaI	CCWGG	1 cut(s)	801
NcoI	CCATGG	1 cut(s)	390
NdeI	CATATG	1 cut(s)	198
NdeII	GATC	6 cut(s)	139, 178, 296, 591, 766, 792
NlaIII	CATG	6 cut(s)	178, 187, 394, 472, 618, 773
NlaIV	GGNNCC	5 cut(s)	26, 189, 498, 761, 852
NmuCI	GTSAC	1 cut(s)	617
NsiI	ATGCAT	1 cut(s)	775
NspI	RCATGY	1 cut(s)	618
PfeI	GAWTC	3 cut(s)	308, 371, 464
Psp6I	CCWGG	1 cut(s)	799
PspGI	CCWGG	1 cut(s)	799
PspN4I	GGNNCC	5 cut(s)	26, 189, 498, 761, 852
PspPI	GGNCC	2 cut(s)	187, 497
PsrI	GAACNNNNNNTAC	2 cut(s)	665, 697
PsuI	RGATCY	2 cut(s)	296, 591
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
Sau3AI	GATC	6 cut(s)	139, 178, 296, 591, 766, 792
Sau96I	GGNCC	2 cut(s)	187, 497
ScrFI	CCNGG	1 cut(s)	801
SduI	GDGCHC	4 cut(s)	29, 70, 764, 789
SetI	ASST	7 cut(s)	93, 108, 157, 307, 345, 681, 866
SfaNI	GCATC	1 cut(s)	782
SfcI	CTRYAG	1 cut(s)	519
SinI	GGWCC	2 cut(s)	187, 497
SmlI	CTYRAG	3 cut(s)	69, 300, 347
SmoI	CTYRAG	3 cut(s)	69, 300, 347
SpeI	ACTAGT	1 cut(s)	49
Sse9I	AATT	7 cut(s)	75, 122, 147, 312, 541, 562, 692
SsiI	CCGC	1 cut(s)	80
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	799
StyI	CCWWGG	1 cut(s)	390
TasI	AATT	7 cut(s)	75, 122, 147, 312, 541, 562, 692
TatI	WGTACW	1 cut(s)	681
TfiI	GAWTC	3 cut(s)	308, 371, 464
TscAI	CASTG	4 cut(s)	520, 532, 787, 873
TseFI	GTSAC	1 cut(s)	617
Tsp45I	GTSAC	1 cut(s)	617
TspDTI	ATGAA	3 cut(s)	26, 143, 153
TspRI	CASTG	4 cut(s)	520, 532, 787, 873
VpaK11BI	GGWCC	2 cut(s)	187, 497
XapI	RAATTY	2 cut(s)	147, 541
XceI	RCATGY	1 cut(s)	618
XspI	CTAG	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.