Rroxscaffold_7G00203800

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007143
Physical Location & Seq
Forward (+)
52725151 .. 52726227
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00203800.1

Sequence Viewer

Length: 504 bp
ATGCCCAACTCTACTCCCAGCATCGCGTCAACCATAGAAGATGAGCTAGAAGAGCCCACCTCCCCTCAATCACGGAAGTGTGCTCAAGGAATTGCAGGCAGGAAGCTGACTGAGGAACAGCTGGAAACAACACACAAATTGATGAAGCCTATGGATCAAAGAATTCAAGCTCATCATTCATCATCCCACATGGATCACATGGACCCTTCACATATGATTTTCTTCACCATCAAGGACTTGAAAGTTGGGAAAACAATGCCAATCTATTTCCCAAAAAGAGACCCTTCAAAATCTCCTCGTTTTTTACCAAGATCTCAAGCTGATTCAATTCCTTTCTCATCAAAACAACTCCCCCACCTCCTTGAGTTCTTCTCTTTCTCCAAAGATTCTCACCAAGCCAAAGCCATGGAAGACACTATTAGGCAATGTGAGATTGAACCCATCAAAGGAGAAACCAAGTTCTGTCCCACTTCCCTTAGAATCCATGCTGGATTTCACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

167

Amino Acids

19.03

Weight (kDa)

7.82

Isoelectric Point (pI)

59.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 73 - 160 6.3e-28 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 26
AclWI GGATC 2 cut(s) 162, 201
AcsI RAATTY 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 5 cut(s) 167, 241, 288, 327, 437
AleI CACNNNNGTG 1 cut(s) 76
AluBI AGCT 5 cut(s) 46, 106, 121, 170, 320
AluI AGCT 5 cut(s) 46, 106, 121, 170, 320
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 2 cut(s) 162, 201
ApoI RAATTY 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 2 cut(s) 217, 383
AvaII GGWCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 85
BccI CCATC 2 cut(s) 236, 449
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 1 cut(s) 47
BglII AGATCT 1 cut(s) 311
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 204
BmsI GCATC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 417
BplI GAGNNNNNCTC 4 cut(s) 44, 76, 356, 388
BpuEI CTTGAG 3 cut(s) 69, 300, 383
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 405
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse3DI GCAATG 1 cut(s) 431
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMI GCAATG 1 cut(s) 431
BseMII CTCAG 1 cut(s) 102
BseRI GAGGAG 1 cut(s) 285
BseYI CCCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 85
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 450
Bso31I GGTCTC 1 cut(s) 273
Bsp1286I GDGCHC 2 cut(s) 57, 85
Bsp143I GATC 3 cut(s) 154, 193, 311
Bsp19I CCATGG 1 cut(s) 405
BspCNI CTCAG 1 cut(s) 103
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 2 cut(s) 162, 201
BspQI GCTCTTC 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 431
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 3 cut(s) 154, 193, 311
BssT1I CCWWGG 1 cut(s) 405
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 2 cut(s) 111, 476
BstDSI CCRYGG 1 cut(s) 405
BstF5I GGATG 1 cut(s) 182
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 3 cut(s) 157, 196, 314
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 3 cut(s) 154, 193, 311
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstUI CGCG 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 311
BstXI CCANNNNNNTGG 1 cut(s) 406
BstYI RGATCY 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 405
BtgZI GCGATG 1 cut(s) 7
BtsCI GGATG 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 202
CseI GACGC 1 cut(s) 15
CviAII CATG 4 cut(s) 190, 199, 406, 485
CviJI RGCY 9 cut(s) 46, 55, 106, 121, 148, 170, 320, 398, 404
CviKI_1 RGCY 9 cut(s) 46, 55, 106, 121, 148, 170, 320, 398, 404
DdeI CTNAG 2 cut(s) 111, 476
DpnI GATC 3 cut(s) 156, 195, 313
DpnII GATC 3 cut(s) 154, 193, 311
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 405
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 405
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 4 cut(s) 193, 202, 409, 488
FaiI YATR 9 cut(s) 35, 152, 191, 200, 213, 215, 407, 486, 502
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FaqI GGGAC 1 cut(s) 450
FatI CATG 4 cut(s) 189, 198, 405, 484
FauNDI CATATG 1 cut(s) 213
FokI GGATG 1 cut(s) 169
FriOI GRGCYC 1 cut(s) 57
FspBI CTAG 1 cut(s) 47
GsaI CCCAGC 1 cut(s) 21
HgaI GACGC 1 cut(s) 15
Hin1II CATG 4 cut(s) 193, 202, 409, 488
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 3 cut(s) 323, 386, 480
HphI GGTGA 2 cut(s) 217, 383
Hpy166II GTNNAC 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 2 cut(s) 216, 294
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 2 cut(s) 111, 476
Hsp92II CATG 4 cut(s) 193, 202, 409, 488
Kzo9I GATC 3 cut(s) 154, 193, 311
LguI GCTCTTC 1 cut(s) 45
LpnPI CCDG 5 cut(s) 31, 81, 85, 107, 474
LweI GCATC 1 cut(s) 30
MaeI CTAG 1 cut(s) 47
MalI GATC 3 cut(s) 156, 195, 313
MboI GATC 3 cut(s) 154, 193, 311
MboII GAAGA 5 cut(s) 50, 62, 214, 361, 422
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 2 cut(s) 57, 85
MluCI AATT 4 cut(s) 90, 137, 162, 327
MnlI CCTC 5 cut(s) 70, 75, 106, 306, 368
MslI CAYNNNNRTG 1 cut(s) 76
MspA1I CMGCKG 1 cut(s) 121
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 52
NcoI CCATGG 1 cut(s) 405
NdeI CATATG 1 cut(s) 213
NdeII GATC 3 cut(s) 154, 193, 311
NlaIII CATG 4 cut(s) 193, 202, 409, 488
NlaIV GGNNCC 1 cut(s) 204
OliI CACNNNNGTG 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 45
PfeI GAWTC 3 cut(s) 323, 386, 480
PspFI CCCAGC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 202
PsuI RGATCY 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 76
SapI GCTCTTC 1 cut(s) 45
Sau3AI GATC 3 cut(s) 154, 193, 311
Sau96I GGNCC 1 cut(s) 202
SduI GDGCHC 2 cut(s) 57, 85
SetI ASST 7 cut(s) 48, 62, 108, 123, 172, 322, 360
SfaNI GCATC 1 cut(s) 30
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 76
SmlI CTYRAG 3 cut(s) 84, 315, 362
SmoI CTYRAG 3 cut(s) 84, 315, 362
Sse9I AATT 4 cut(s) 90, 137, 162, 327
SspMI CTAG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 405
TasI AATT 4 cut(s) 90, 137, 162, 327
TfiI GAWTC 3 cut(s) 323, 386, 480
TspDTI ATGAA 2 cut(s) 158, 168
TspGWI ACGGA 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 202
XapI RAATTY 1 cut(s) 162
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.