FvH4_2g08530

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007143
Physical Location & Seq
Reverse (-)
7479604 .. 7481019
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08530.t1

Sequence Viewer

Length: 864 bp
ATGGGTTCAGGTCTTGCTTTCTGGTGCCCCTTGCTTCATCTTCTGCTACTACTGGTCATGTGTGTACAAGGAATTTCATGCAGGAAGCTGACAGAGTTGGAAACAACACACAACTTGATGAAGCATATGGATCAAAGAATTCCTGCTCATCATTCATCATCCCACATGGATCACATGGACCCTTCACATATGATTTTCTTCACCATCAATAACTTAAAGGTTGGCAAAACCATGCCAATCTATTTCCCAAAAAGAAACCCTTCAAAATCTCCTCGCTTCTTACCAAGAAGTGAAGCTGATTCGATTCCTTTCTCAACAGAGGAACTCCCCCACCTCCTTGAGTTCTTCTCTTTCTCCAAAAACTCTCCCCAAGCCAAAGCCATGGAAGACACTCTTAGGCAATGTGAGATTGAACCCATCAAAGGAGAGACCAAATTCTGTCCCACTTCCTTAGAATCCATGCTGGACTTCAGTCATGGCATGCTAGGACCAAACACCCCTTTCACTGCTGTAGCCACTGCCCATCTCACAAATTCAACTACCCTTTTCCAGAATTATACCATTTTGAAAGAGCCTAAAGAGATCTATGCTCCAAAGATGGTGGCATGTCACACCATGCCTTACCCTTATGCAGTTTTCTATTGCCATAGCCAACAAAGTGTGAACAAGGTGTACAAAGTTGAATTAGGGGGTGAAGATGGAGATAGAGTTGACGCTGTTGCTGTCTGTCATTTGGATACTTCTGAATGGAGCCCTAATCATGTATCATTCAGTGTGCTTAGAATCAAGCCTGGGACGTCTGCTGTGTGTCATTTCTTTGCTGCTGATAATCTTGTATGGGTTCCAACATCAACCTCAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

288

Amino Acids

32.29

Weight (kDa)

6.59

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 65 - 282 4.4e-84 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 800
AccB1I GGYRCC 1 cut(s) 24
AclWI GGATC 2 cut(s) 138, 177
AcsI RAATTY 4 cut(s) 72, 138, 434, 532
AcuI CTGAAG 1 cut(s) 454
AcyI GRCGYC 1 cut(s) 797
AfaI GTAC 2 cut(s) 66, 674
AfiI CCNNNNNNNGG 1 cut(s) 422
AgsI TTSAA 5 cut(s) 264, 413, 537, 568, 683
AjnI CCWGG 1 cut(s) 790
AluBI AGCT 2 cut(s) 88, 296
AluI AGCT 2 cut(s) 88, 296
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 2 cut(s) 138, 177
ApeKI GCWGC 1 cut(s) 821
ApoI RAATTY 4 cut(s) 72, 138, 434, 532
Asp700I GAANNNNTTC 1 cut(s) 259
AspS9I GGNCC 2 cut(s) 178, 488
AsuHPI GGTGA 2 cut(s) 193, 704
AvaII GGWCC 2 cut(s) 178, 488
BaeGI GKGCMC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 24
BanII GRGCYC 1 cut(s) 755
BbsI GAAGAC 1 cut(s) 393
BbvI GCAGC 1 cut(s) 808
BccI CCATC 5 cut(s) 212, 425, 531, 592, 692
BciT130I CCWGG 1 cut(s) 792
BciVI GTATCC 1 cut(s) 730
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 1 cut(s) 485
BfmI CTRYAG 1 cut(s) 510
BfuI GTATCC 1 cut(s) 730
BglII AGATCT 1 cut(s) 582
BisI GCNGC 1 cut(s) 822
BlsI GCNGC 1 cut(s) 823
Bme1390I CCNGG 1 cut(s) 792
Bme18I GGWCC 2 cut(s) 178, 488
BmgT120I GGNCC 2 cut(s) 178, 488
BmiI GGNNCC 4 cut(s) 26, 180, 752, 843
BmrFI CCNGG 1 cut(s) 792
BoxI GACNNNNGTC 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 393
BplI GAGNNNNNCTC 2 cut(s) 332, 364
BpuEI CTTGAG 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 797
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 381, 791
BsaXI ACNNNNNCTCC 2 cut(s) 693, 723
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse1I ACTGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 407
BseBI CCWGG 1 cut(s) 792
BseDI CCNNGG 2 cut(s) 381, 791
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMI GCAATG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 261
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 1 cut(s) 808
BshNI GGYRCC 1 cut(s) 24
BslFI GGGAC 2 cut(s) 426, 808
BslI CCNNNNNNNGG 1 cut(s) 422
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 2 cut(s) 426, 808
Bso31I GGTCTC 1 cut(s) 422
Bsp1286I GDGCHC 2 cut(s) 29, 755
Bsp1407I TGTACA 2 cut(s) 64, 672
Bsp143I GATC 3 cut(s) 130, 169, 582
Bsp19I CCATGG 1 cut(s) 381
BspLI GGNNCC 4 cut(s) 26, 180, 752, 843
BspPI GGATC 2 cut(s) 138, 177
BspT107I GGYRCC 1 cut(s) 24
BspTNI GGTCTC 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 407
BsrGI TGTACA 2 cut(s) 64, 672
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 381, 791
BssMI GATC 3 cut(s) 130, 169, 582
BssNI GRCGYC 1 cut(s) 797
BssT1I CCWWGG 1 cut(s) 381
Bst2UI CCWGG 1 cut(s) 792
BstACI GRCGYC 1 cut(s) 797
BstAUI TGTACA 2 cut(s) 64, 672
BstC8I GCNNGC 1 cut(s) 482
BstDEI CTNAG 4 cut(s) 395, 451, 779, 856
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 158
BstKTI GATC 3 cut(s) 133, 172, 585
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 3 cut(s) 130, 169, 582
BstNI CCWGG 1 cut(s) 792
BstNSI RCATGY 2 cut(s) 484, 609
BstPAI GACNNNNGTC 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 790
BstSFI CTRYAG 1 cut(s) 510
BstSLI GKGCMC 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 808
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 1 cut(s) 582
BstXI CCANNNNNNTGG 1 cut(s) 382
BstYI RGATCY 1 cut(s) 582
BsuI GTATCC 1 cut(s) 730
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 1 cut(s) 158
BtsI GCAGTG 2 cut(s) 504, 516
BtsIMutI CAGTG 3 cut(s) 504, 516, 778
Cac8I GCNNGC 1 cut(s) 482
Cfr13I GGNCC 2 cut(s) 178, 488
CseI GACGC 1 cut(s) 722
Csp6I GTAC 2 cut(s) 65, 673
CspCI CAANNNNNGTGG 2 cut(s) 582, 617
CviJI RGCY 9 cut(s) 88, 296, 374, 380, 515, 574, 651, 753, 790
CviKI_1 RGCY 9 cut(s) 88, 296, 374, 380, 515, 574, 651, 753, 790
CviQI GTAC 2 cut(s) 65, 673
DdeI CTNAG 4 cut(s) 395, 451, 779, 856
DpnI GATC 3 cut(s) 132, 171, 584
DpnII GATC 3 cut(s) 130, 169, 582
Eco130I CCWWGG 1 cut(s) 381
Eco24I GRGCYC 1 cut(s) 755
Eco31I GGTCTC 1 cut(s) 422
Eco47I GGWCC 2 cut(s) 178, 488
Eco57I CTGAAG 1 cut(s) 454
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 790
EcoT14I CCWWGG 1 cut(s) 381
EcoT38I GRGCYC 1 cut(s) 755
ErhI CCWWGG 1 cut(s) 381
FalI AAGNNNNNCTT 4 cut(s) 244, 276, 378, 410
FaqI GGGAC 2 cut(s) 426, 808
FauNDI CATATG 2 cut(s) 126, 189
Fnu4HI GCNGC 1 cut(s) 822
FokI GGATG 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 755
Fsp4HI GCNGC 1 cut(s) 822
FspBI CTAG 1 cut(s) 485
GluI GCNGC 1 cut(s) 822
HgaI GACGC 1 cut(s) 722
Hin1I GRCGYC 1 cut(s) 797
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HinfI GANTC 4 cut(s) 299, 304, 455, 783
HphI GGTGA 2 cut(s) 193, 704
Hpy166II GTNNAC 4 cut(s) 65, 664, 673, 712
Hpy188I TCNGA 1 cut(s) 745
Hpy188III TCNNGA 1 cut(s) 550
Hpy8I GTNNAC 4 cut(s) 65, 664, 673, 712
HpyAV CCTTC 2 cut(s) 192, 270
HpyCH4IV ACGT 1 cut(s) 797
HpyCH4V TGCA 2 cut(s) 81, 632
HpyF3I CTNAG 4 cut(s) 395, 451, 779, 856
HpySE526I ACGT 1 cut(s) 797
Hsp92I GRCGYC 1 cut(s) 797
Kzo9I GATC 3 cut(s) 130, 169, 582
LmnI GCTCC 2 cut(s) 595, 750
LpnPI CCDG 8 cut(s) 7, 38, 67, 156, 449, 563, 777, 804
Lsp1109I GCAGC 1 cut(s) 808
MaeI CTAG 1 cut(s) 485
MaeII ACGT 1 cut(s) 797
MaeIII GTNAC 1 cut(s) 608
MalI GATC 3 cut(s) 132, 171, 584
MboI GATC 3 cut(s) 130, 169, 582
MboII GAAGA 5 cut(s) 32, 190, 337, 398, 707
MflI RGATCY 1 cut(s) 582
MhlI GDGCHC 2 cut(s) 29, 755
MluCI AATT 6 cut(s) 72, 138, 434, 532, 553, 683
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 3 cut(s) 282, 313, 344
MroXI GAANNNNTTC 1 cut(s) 259
MseI TTAA 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 792
MvaI CCWGG 1 cut(s) 792
NcoI CCATGG 1 cut(s) 381
NdeI CATATG 2 cut(s) 126, 189
NdeII GATC 3 cut(s) 130, 169, 582
NlaIV GGNNCC 4 cut(s) 26, 180, 752, 843
NmuCI GTSAC 1 cut(s) 608
NspI RCATGY 2 cut(s) 484, 609
PaeI GCATGC 1 cut(s) 484
PdmI GAANNNNTTC 1 cut(s) 259
PfeI GAWTC 4 cut(s) 299, 304, 455, 783
PkrI GCNGC 1 cut(s) 823
PshAI GACNNNNGTC 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 790
PspGI CCWGG 1 cut(s) 790
PspN4I GGNNCC 4 cut(s) 26, 180, 752, 843
PspPI GGNCC 2 cut(s) 178, 488
PsrI GAACNNNNNNTAC 2 cut(s) 656, 688
PsuI RGATCY 1 cut(s) 582
RsaI GTAC 2 cut(s) 66, 674
RsaNI GTAC 2 cut(s) 65, 673
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 1 cut(s) 822
Sau3AI GATC 3 cut(s) 130, 169, 582
Sau96I GGNCC 2 cut(s) 178, 488
ScrFI CCNGG 1 cut(s) 792
SduI GDGCHC 2 cut(s) 29, 755
SetI ASST 8 cut(s) 13, 90, 222, 298, 336, 672, 800, 857
SfcI CTRYAG 1 cut(s) 510
SinI GGWCC 2 cut(s) 178, 488
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SphI GCATGC 1 cut(s) 484
Sse9I AATT 6 cut(s) 72, 138, 434, 532, 553, 683
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 1 cut(s) 790
StyI CCWWGG 1 cut(s) 381
TaiI ACGT 1 cut(s) 800
TaqI TCGA 1 cut(s) 302
TasI AATT 6 cut(s) 72, 138, 434, 532, 553, 683
TatI WGTACW 2 cut(s) 64, 672
TfiI GAWTC 4 cut(s) 299, 304, 455, 783
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TscAI CASTG 3 cut(s) 511, 523, 778
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 1 cut(s) 821
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 4 cut(s) 26, 66, 134, 144
TspRI CASTG 3 cut(s) 511, 523, 778
VpaK11BI GGWCC 2 cut(s) 178, 488
XapI RAATTY 4 cut(s) 72, 138, 434, 532
XceI RCATGY 2 cut(s) 484, 609
XmnI GAANNNNTTC 1 cut(s) 259
XspI CTAG 1 cut(s) 485
ZraI GACGTC 1 cut(s) 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.