MD10G1077900.v1.1

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0007143
Physical Location & Seq
Forward (+)
11097819 .. 11099109
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1077900.v1.1.491

Sequence Viewer

Length: 654 bp
ATGCATCACATGGACCATTCCCTCATGATTTTCTTCACCTTGAAGGACCTAAAGCTGGGGAAAACAATGGCCATCTATTTTCCCAAAAGAAACCTTTCAAAATCTCCCCACTTGTTGCCAAGAGTAGAAGCTGATTTATTTCCCTTCTCCTCAAAACAACTCCACTACCTTCTTCAAGTTTTTTCCTTCTCTCAAGACTCTCCCCAAGCCAAAGCCATGGAAGATACTCTTAGACATTGTGAGACTGCACCCATCAAAGAAGAGATCAAGTCATGTGCTACTTCTTTAGAATCAATGCTTGACTTTGCACGCAGCATCTTCGGATTGGATAATACTTTCCGTAACTACACTATTTTGGAAGAGCCTAAAGAGGTTTTAGCTCCCAAGATGATGGCATGTCACACCATGCCTTACCCTTATGCCGTTTTCTACTGTCACAGCCAAGAAAGGTTGAACAAGGTTTACAAGGTTTCATTAGGTGGTGAGGATGGAGATAGAGTGGATGCTGTTGCTGTTTGCCACTTGGACACCTCTCAGTGGAGCCCTAATCATGCTTCATTTCAAGTCCTTAGGATTAAGCCAGGGCCTTCCCCTGTGTGCCATTTCTTTCCCGCTGATAATCTTGTATGGGTTCCAACCTCCACTTCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

218

Amino Acids

24.74

Weight (kDa)

6.82

Isoelectric Point (pI)

66.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 10 - 212 4.3e-75 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 612
AcoI YGGCCR 1 cut(s) 69
AfiI CCNNNNNNNGG 2 cut(s) 55, 537
AgsI TTSAA 5 cut(s) 43, 99, 176, 454, 563
AjnI CCWGG 1 cut(s) 580
AjuI GAANNNNNNNTTGG 1 cut(s) 628
AleI CACNNNNGTG 1 cut(s) 647
AluBI AGCT 3 cut(s) 55, 131, 380
AluI AGCT 3 cut(s) 55, 131, 380
Alw26I GTCTC 1 cut(s) 236
AoxI GGCC 2 cut(s) 69, 584
ApeKI GCWGC 1 cut(s) 312
Asp700I GAANNNNTTC 1 cut(s) 94
AspS9I GGNCC 3 cut(s) 13, 46, 584
AsuHPI GGTGA 2 cut(s) 28, 494
AvaII GGWCC 2 cut(s) 13, 46
AxyI CCTNAGG 1 cut(s) 569
BalI TGGCCA 1 cut(s) 71
BanII GRGCYC 1 cut(s) 545
BbvI GCAGC 1 cut(s) 324
BccI CCATC 4 cut(s) 80, 260, 385, 482
BceAI ACGGC 1 cut(s) 407
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 1 cut(s) 582
BcoDI GTCTC 1 cut(s) 236
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
Bme1390I CCNGG 1 cut(s) 582
Bme18I GGWCC 2 cut(s) 13, 46
BmgT120I GGNCC 3 cut(s) 13, 46, 584
BmiI GGNNCC 2 cut(s) 542, 633
BmrFI CCNGG 1 cut(s) 582
BmsI GCATC 3 cut(s) 13, 324, 493
BpuEI CTTGAG 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 216, 581
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 537
Bse21I CCTNAGG 1 cut(s) 569
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 2 cut(s) 216, 581
BseGI GGATG 2 cut(s) 493, 508
BseLI CCNNNNNNNGG 2 cut(s) 55, 537
BseMII CTCAG 1 cut(s) 548
BseRI GAGGAG 1 cut(s) 139
BseXI GCAGC 1 cut(s) 324
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 231
BshFI GGCC 2 cut(s) 71, 586
BslI CCNNNNNNNGG 2 cut(s) 55, 537
BsmAI GTCTC 1 cut(s) 236
BsnI GGCC 2 cut(s) 71, 586
Bsp1286I GDGCHC 1 cut(s) 545
Bsp143I GATC 1 cut(s) 264
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 1 cut(s) 612
BspANI GGCC 2 cut(s) 71, 586
BspCNI CTCAG 1 cut(s) 547
BspHI TCATGA 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 542, 633
BspQI GCTCTTC 1 cut(s) 354
BssECI CCNNGG 2 cut(s) 216, 581
BssMI GATC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 1 cut(s) 434
Bst6I CTCTTC 2 cut(s) 255, 354
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 3 cut(s) 230, 534, 569
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 2 cut(s) 493, 508
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 1 cut(s) 264
BstNI CCWGG 1 cut(s) 582
BstNSI RCATGY 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 580
BstV1I GCAGC 1 cut(s) 324
BstXI CCANNNNNNTGG 2 cut(s) 217, 391
Bsu36I CCTNAGG 1 cut(s) 569
BsuRI GGCC 2 cut(s) 71, 586
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 2 cut(s) 493, 508
BtsIMutI CAGTG 1 cut(s) 542
Cac8I GCNNGC 1 cut(s) 310
CciI TCATGA 1 cut(s) 24
Cfr13I GGNCC 3 cut(s) 13, 46, 584
CviAII CATG 7 cut(s) 10, 25, 217, 273, 396, 406, 551
DdeI CTNAG 3 cut(s) 230, 534, 569
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 2 cut(s) 255, 354
EarI CTCTTC 2 cut(s) 255, 354
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 545
Eco47I GGWCC 2 cut(s) 13, 46
Eco81I CCTNAGG 1 cut(s) 569
EcoO109I RGGNCCY 2 cut(s) 46, 584
EcoRII CCWGG 1 cut(s) 580
EcoT14I CCWWGG 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 545
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 7 cut(s) 13, 28, 220, 276, 399, 409, 554
FaiI YATR 9 cut(s) 11, 26, 218, 274, 397, 407, 420, 552, 628
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 7 cut(s) 9, 24, 216, 272, 395, 405, 550
FauI CCCGC 1 cut(s) 619
Fnu4HI GCNGC 1 cut(s) 313
FokI GGATG 2 cut(s) 500, 515
FriOI GRGCYC 1 cut(s) 545
Fsp4HI GCNGC 1 cut(s) 313
GluI GCNGC 1 cut(s) 313
GsaI CCCAGC 1 cut(s) 59
HaeIII GGCC 2 cut(s) 71, 586
Hin1II CATG 7 cut(s) 13, 28, 220, 276, 399, 409, 554
HinfI GANTC 2 cut(s) 197, 290
HphI GGTGA 2 cut(s) 28, 494
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 2 cut(s) 25, 194
Hpy8I GTNNAC 1 cut(s) 463
HpyAV CCTTC 5 cut(s) 37, 154, 179, 196, 597
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4V TGCA 3 cut(s) 4, 248, 308
HpyF3I CTNAG 3 cut(s) 230, 534, 569
Hsp92II CATG 7 cut(s) 13, 28, 220, 276, 399, 409, 554
Kzo9I GATC 1 cut(s) 264
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 2 cut(s) 385, 540
LpnPI CCDG 4 cut(s) 41, 567, 594, 606
Lsp1109I GCAGC 1 cut(s) 324
LweI GCATC 3 cut(s) 13, 324, 493
MaeIII GTNAC 3 cut(s) 341, 398, 434
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 6 cut(s) 25, 164, 233, 272, 310, 371
MhlI GDGCHC 1 cut(s) 545
MlsI TGGCCA 1 cut(s) 71
MluNI TGGCCA 1 cut(s) 71
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 6 cut(s) 32, 160, 364, 478, 541, 649
Mox20I TGGCCA 1 cut(s) 71
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 94
MscI TGGCCA 1 cut(s) 71
MseI TTAA 1 cut(s) 576
MslI CAYNNNNRTG 1 cut(s) 647
Msp20I TGGCCA 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 614
MspR9I CCNGG 1 cut(s) 582
MvaI CCWGG 1 cut(s) 582
NcoI CCATGG 1 cut(s) 216
NdeII GATC 1 cut(s) 264
NlaIII CATG 7 cut(s) 13, 28, 220, 276, 399, 409, 554
NlaIV GGNNCC 2 cut(s) 542, 633
NmuCI GTSAC 2 cut(s) 398, 434
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 399
OliI CACNNNNGTG 1 cut(s) 647
PagI TCATGA 1 cut(s) 24
PciSI GCTCTTC 1 cut(s) 354
PdmI GAANNNNTTC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 1 cut(s) 314
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PpuMI RGGWCCY 1 cut(s) 46
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 580
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 2 cut(s) 542, 633
PspPI GGNCC 3 cut(s) 13, 46, 584
PspPPI RGGWCCY 1 cut(s) 46
PsrI GAACNNNNNNTAC 2 cut(s) 446, 478
RseI CAYNNNNRTG 1 cut(s) 647
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 3 cut(s) 13, 46, 584
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 582
SduI GDGCHC 1 cut(s) 545
SfaNI GCATC 3 cut(s) 13, 324, 493
SinI GGWCC 2 cut(s) 13, 46
SmiMI CAYNNNNRTG 1 cut(s) 647
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
SsiI CCGC 1 cut(s) 612
StyD4I CCNGG 1 cut(s) 580
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 434
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 1 cut(s) 542
TseFI GTSAC 2 cut(s) 398, 434
TseI GCWGC 1 cut(s) 312
Tsp45I GTSAC 2 cut(s) 398, 434
TspDTI ATGAA 2 cut(s) 462, 546
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 1 cut(s) 542
VpaK11BI GGWCC 2 cut(s) 13, 46
XceI RCATGY 1 cut(s) 399
XmnI GAANNNNTTC 1 cut(s) 94
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.