Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007143

Physical Location & Seq

Genomic Coordinates Forward (+)

6869807 .. 6870822

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g06110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGTAAGCACTAGTAAGTTCAAAGGAAGGAACATGGAGACAGGACTTGTGCTCTTGATCCCTATACTTCATCTCCTACTGCTTGTCATGTGTCCTCAGGGAATCGAAGGAAGAGACTTTATGGATCGAAGAATTCGTGCTAAGACAGATGGTGATAATGGCCATGAAACTACACATCATGACCATGCTCATCATGCTCATCCATCATCCCACATGCATCACATGGACCATTCCCTCATGATTTTCTTCACCTTGAAGGACCTAAAGCTGGGGAAAACAATGGCCATCTATTTTCCCAAAAGAAACCCTTCAAAATCTCCCCACTTGTTGCCAAGAGTAGAAGCTGAATTATTTCCCTTCTCCTCAAAACAACTCCACCACCTTCTTCAAGTTTTTTCCTTCTCTCAAGACTCTCCCCAAGCCAAAGCCATGGAAGATACTCTTAGACAATGTGAGACTGAACCCATCAAGGGAGAGATCAAGTCATGTGCTACTTCTTTAGAATCCATGCTTGACTTTGCACGCAGCATCTTCGGATTGGATAATACTTTCAGTGTTGTGTCCACTACCCATCTCACAAACTCATCCACCCATTTCCAGAACTACACTATTTTGGAAGAGCCTAAAGAGGTTTTAGCTCCCAAGATGGTGGCATGTCACACCATGCCTTACCCTTATGCGGTTTTCTACTGTCACAGCCAAGAAAGCATGAACAAGGTTTACAAGGTTTCATTAGGTGGTGAGGATGGAGATAGAGTGGATGCTGTTGCTGTTTGCCACTTGGACACCTCTCAGTGGAGCCCTAATCATGCTTCATTTCAAGTCCTTAGGATTAAGCCCGGGTCTTCCCCTGTGTGCCATTTCTTTCCTGCTGATAATCTTGTATGGATTCCAACCTCCACTTCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

304

Amino Acids

34.18

Weight (kDa)

6.73

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49320
fragaria_vesca	FvH4_2g08510 FvH4_2g08530
malus_domestica	MD05G1068000.v1.1 MD10G1077900.v1.1 MD10G1078000.v1.1
prunus_persica	Prupe.8G098700_v2.0.a1 Prupe.8G098900_v2.0.a1 Prupe.8G099700_v2.0.a1 Prupe.8G099900_v2.0.a1
pyrus_communis	pycom05g05900 pycom10g06110 pycom10g06130 pycom289g00010
rosa_chinensis	RchiOBHm_Chr6g0263891
rosa_laevigata	RLG00000014306
rosa_multiflora	Rmu_sc0002112.1_g000012
rosa_roxburghii	Rroxscaffold_176G00431280 Rroxscaffold_7G00203800
rosa_rugosa	Rorug06G0006700
rosa_samantha	Rh6AG126700 Rh6BG123000 Rh6CG121400 Rh6DG108900
rosa_wichuraiana	Rw6G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	680
AclWI	GGATC	2 cut(s)	52, 132
AcoI	YGGCCR	2 cut(s)	160, 282
AcsI	RAATTY	1 cut(s)	132
AfiI	CCNNNNNNNGG	4 cut(s)	268, 470, 679, 795
AgsI	TTSAA	5 cut(s)	22, 256, 312, 389, 821
AhlI	ACTAGT	1 cut(s)	11
AjuI	GAANNNNNNNTTGG	1 cut(s)	886
AleI	CACNNNNGTG	1 cut(s)	905
AluBI	AGCT	3 cut(s)	268, 344, 638
AluI	AGCT	3 cut(s)	268, 344, 638
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	3 cut(s)	32, 108, 449
AlwI	GGATC	2 cut(s)	52, 132
Ama87I	CYCGRG	1 cut(s)	839
AoxI	GGCC	2 cut(s)	160, 282
ApeKI	GCWGC	1 cut(s)	525
ApoI	RAATTY	1 cut(s)	132
Asp700I	GAANNNNTTC	2 cut(s)	307, 351
AspS9I	GGNCC	2 cut(s)	226, 259
AsuC2I	CCSGG	2 cut(s)	840, 841
AsuHPI	GGTGA	3 cut(s)	164, 241, 752
AvaI	CYCGRG	1 cut(s)	839
AvaII	GGWCC	2 cut(s)	226, 259
AxyI	CCTNAGG	2 cut(s)	96, 827
BalI	TGGCCA	2 cut(s)	162, 284
BanII	GRGCYC	1 cut(s)	803
BbsI	GAAGAC	1 cut(s)	837
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	537
BccI	CCATC	7 cut(s)	143, 211, 293, 473, 579, 640, 740
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BcnI	CCSGG	2 cut(s)	840, 841
BcoDI	GTCTC	3 cut(s)	32, 108, 449
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	1 cut(s)	526
BlsI	GCNGC	1 cut(s)	527
Bme1390I	CCNGG	2 cut(s)	840, 841
Bme18I	GGWCC	2 cut(s)	226, 259
BmeT110I	CYCGRG	1 cut(s)	839
BmgT120I	GGNCC	2 cut(s)	226, 259
BmiI	GGNNCC	1 cut(s)	800
BmrFI	CCNGG	2 cut(s)	840, 841
BmsI	GCATC	3 cut(s)	226, 537, 751
BpiI	GAAGAC	1 cut(s)	837
BpuEI	CTTGAG	1 cut(s)	390
BpuMI	CCSGG	2 cut(s)	840, 841
BsaJI	CCNNGG	2 cut(s)	429, 839
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 741, 771
Bsc4I	CCNNNNNNNGG	4 cut(s)	268, 470, 679, 795
Bse21I	CCTNAGG	2 cut(s)	96, 827
BseDI	CCNNGG	2 cut(s)	429, 839
BseGI	GGATG	5 cut(s)	199, 206, 584, 751, 766
BseLI	CCNNNNNNNGG	4 cut(s)	268, 470, 679, 795
BseMII	CTCAG	2 cut(s)	110, 806
BseRI	GAGGAG	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	537
BseYI	CCCAGC	1 cut(s)	268
BshFI	GGCC	2 cut(s)	162, 284
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	839
BsiSI	CCGG	1 cut(s)	840
BslI	CCNNNNNNNGG	4 cut(s)	268, 470, 679, 795
BsmAI	GTCTC	3 cut(s)	32, 108, 449
BsnI	GGCC	2 cut(s)	162, 284
BsoBI	CYCGRG	1 cut(s)	839
Bsp1286I	GDGCHC	2 cut(s)	54, 803
Bsp143I	GATC	3 cut(s)	57, 124, 477
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	1 cut(s)	680
BspANI	GGCC	2 cut(s)	162, 284
BspCNI	CTCAG	2 cut(s)	109, 805
BspHI	TCATGA	2 cut(s)	178, 237
BspLI	GGNNCC	1 cut(s)	800
BspPI	GGATC	2 cut(s)	52, 132
BspQI	GCTCTTC	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	429, 839
BssMI	GATC	3 cut(s)	57, 124, 477
BssT1I	CCWWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	692
Bst6I	CTCTTC	2 cut(s)	106, 612
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	5 cut(s)	96, 141, 443, 792, 827
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	5 cut(s)	199, 206, 584, 751, 766
BstKTI	GATC	3 cut(s)	60, 127, 480
BstMAI	GTCTC	3 cut(s)	32, 108, 449
BstMBI	GATC	3 cut(s)	57, 124, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 705
BstNSI	RCATGY	2 cut(s)	217, 657
BstSCI	CCNGG	2 cut(s)	838, 839
BstV1I	GCAGC	1 cut(s)	537
BstV2I	GAAGAC	1 cut(s)	837
BstXI	CCANNNNNNTGG	2 cut(s)	430, 649
Bsu36I	CCTNAGG	2 cut(s)	96, 827
BsuRI	GGCC	2 cut(s)	162, 284
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	5 cut(s)	199, 206, 584, 751, 766
BtsIMutI	CAGTG	2 cut(s)	559, 800
Cac8I	GCNNGC	1 cut(s)	523
CciI	TCATGA	2 cut(s)	178, 237
Cfr13I	GGNCC	2 cut(s)	226, 259
Cfr9I	CCCGGG	1 cut(s)	839
DdeI	CTNAG	5 cut(s)	96, 141, 443, 792, 827
DpnI	GATC	3 cut(s)	59, 126, 479
DpnII	GATC	3 cut(s)	57, 124, 477
EaeI	YGGCCR	2 cut(s)	160, 282
Eam1104I	CTCTTC	2 cut(s)	106, 612
EarI	CTCTTC	2 cut(s)	106, 612
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	803
Eco47I	GGWCC	2 cut(s)	226, 259
Eco81I	CCTNAGG	2 cut(s)	96, 827
Eco88I	CYCGRG	1 cut(s)	839
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	429
EcoT22I	ATGCAT	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	803
ErhI	CCWWGG	1 cut(s)	429
FalI	AAGNNNNNCTT	4 cut(s)	292, 324, 426, 458
Fnu4HI	GCNGC	1 cut(s)	526
FokI	GGATG	5 cut(s)	186, 193, 571, 758, 773
FriOI	GRGCYC	1 cut(s)	803
Fsp4HI	GCNGC	1 cut(s)	526
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	1 cut(s)	526
GsaI	CCCAGC	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	162, 284
HapII	CCGG	1 cut(s)	840
HinfI	GANTC	4 cut(s)	102, 410, 503, 889
HpaII	CCGG	1 cut(s)	840
HphI	GGTGA	3 cut(s)	164, 241, 752
Hpy166II	GTNNAC	2 cut(s)	564, 721
Hpy188I	TCNGA	1 cut(s)	536
Hpy188III	TCNNGA	5 cut(s)	55, 179, 238, 407, 598
Hpy8I	GTNNAC	2 cut(s)	564, 721
HpyAV	CCTTC	7 cut(s)	21, 101, 250, 318, 367, 392, 409
HpyCH4III	ACNGT	1 cut(s)	692
HpyCH4V	TGCA	2 cut(s)	217, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 705
HpyF3I	CTNAG	5 cut(s)	96, 141, 443, 792, 827
Kzo9I	GATC	3 cut(s)	57, 124, 477
LguI	GCTCTTC	1 cut(s)	612
LmnI	GCTCC	2 cut(s)	643, 798
LpnPI	CCDG	7 cut(s)	27, 83, 254, 611, 853, 864, 882
Lsp1109I	GCAGC	1 cut(s)	537
LweI	GCATC	3 cut(s)	226, 537, 751
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	656, 692
MalI	GATC	3 cut(s)	59, 126, 479
MboI	GATC	3 cut(s)	57, 124, 477
MboII	GAAGA	8 cut(s)	123, 141, 238, 377, 446, 523, 629, 837
MhlI	GDGCHC	2 cut(s)	54, 803
MlsI	TGGCCA	2 cut(s)	162, 284
MluCI	AATT	2 cut(s)	132, 347
MluNI	TGGCCA	2 cut(s)	162, 284
MlyI	GAGTC	1 cut(s)	404
MnlI	CCTC	7 cut(s)	105, 245, 373, 622, 736, 799, 907
Mox20I	TGGCCA	2 cut(s)	162, 284
Mph1103I	ATGCAT	1 cut(s)	219
MroXI	GAANNNNTTC	2 cut(s)	307, 351
MscI	TGGCCA	2 cut(s)	162, 284
MseI	TTAA	1 cut(s)	834
MslI	CAYNNNNRTG	2 cut(s)	183, 905
Msp20I	TGGCCA	2 cut(s)	162, 284
MspI	CCGG	1 cut(s)	840
MspR9I	CCNGG	2 cut(s)	840, 841
MwoI	GCNNNNNNNGC	2 cut(s)	194, 705
NciI	CCSGG	2 cut(s)	840, 841
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	3 cut(s)	57, 124, 477
NlaIV	GGNNCC	1 cut(s)	800
NmuCI	GTSAC	2 cut(s)	656, 692
NsiI	ATGCAT	1 cut(s)	219
NspI	RCATGY	2 cut(s)	217, 657
OliI	CACNNNNGTG	1 cut(s)	905
PagI	TCATGA	2 cut(s)	178, 237
PciSI	GCTCTTC	1 cut(s)	612
PcsI	WCGNNNNNNNCGW	1 cut(s)	133
PdmI	GAANNNNTTC	2 cut(s)	307, 351
PfeI	GAWTC	3 cut(s)	102, 503, 889
PkrI	GCNGC	1 cut(s)	527
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
PpuMI	RGGWCCY	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	800
PspPI	GGNCC	2 cut(s)	226, 259
PspPPI	RGGWCCY	1 cut(s)	259
PsrI	GAACNNNNNNTAC	2 cut(s)	704, 736
RseI	CAYNNNNRTG	2 cut(s)	183, 905
SapI	GCTCTTC	1 cut(s)	612
SaqAI	TTAA	1 cut(s)	834
SatI	GCNGC	1 cut(s)	526
Sau3AI	GATC	3 cut(s)	57, 124, 477
Sau96I	GGNCC	2 cut(s)	226, 259
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	2 cut(s)	840, 841
SduI	GDGCHC	2 cut(s)	54, 803
SfaNI	GCATC	3 cut(s)	226, 537, 751
SinI	GGWCC	2 cut(s)	226, 259
SmaI	CCCGGG	1 cut(s)	841
SmiMI	CAYNNNNRTG	2 cut(s)	183, 905
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	2 cut(s)	132, 347
SsiI	CCGC	1 cut(s)	680
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	838, 839
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	692
TaqI	TCGA	2 cut(s)	105, 127
TasI	AATT	2 cut(s)	132, 347
TfiI	GAWTC	3 cut(s)	102, 503, 889
Tru1I	TTAA	1 cut(s)	834
Tru9I	TTAA	1 cut(s)	834
TscAI	CASTG	2 cut(s)	559, 800
TseFI	GTSAC	2 cut(s)	656, 692
TseI	GCWGC	1 cut(s)	525
Tsp45I	GTSAC	2 cut(s)	656, 692
TspDTI	ATGAA	5 cut(s)	59, 180, 720, 725, 804
TspMI	CCCGGG	1 cut(s)	839
TspRI	CASTG	2 cut(s)	559, 800
VpaK11BI	GGWCC	2 cut(s)	226, 259
XapI	RAATTY	1 cut(s)	132
XceI	RCATGY	2 cut(s)	217, 657
XmaI	CCCGGG	1 cut(s)	839
XmnI	GAANNNNTTC	2 cut(s)	307, 351
XspI	CTAG	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.