Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007143

Physical Location & Seq

Genomic Coordinates Forward (+)

7456633 .. 7457779

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g05900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCGTCTTTCATTTGTTTCTTGGAGCCTCGTCTCATACGCACTACTTGTTTTATTGTTTGAATATAACCTCCATAATGCACAAGGAAGCAGTGGCAGGAAGATTATTACTCTTGGAAATGGGAAAGACATAAAAAAAGAAGACTCCATTGATTTAGATCAAGGCGGTAATAATGGTCGTTCATCATCTCACATGGATCACATGGACCCTGCCCTAAATGTTTTCTTCACCCCAAAAGATCTCAAACGAGGAAAAAAAATGCCCATATACTTCTCAAAAAATAACTCTTCCACATCTCCAAGACTTTTGGCCAGAGAAGAAGCTGATTCCATTCCTTCCTCAATCTCAAACCTCCCATACCTTCTTCAACTCTTCTCTTTCCCCCAAGACTCTACCCAAGCCAAAGCCGTGGAATACACACTAACCCAACGTGACCTTCAACCCATCAAAGGAGAGGCCAAATTTTGTGCTACCTCATTAGAATCCATGCTTGATTTTGTAGCTGCCCTCTTTGGACAAAATACCCGATTCAAAGTCTTAACCACTATTCAGCTCAAGAACTCAACTACCCTTTTGCAAAATTACACGTTTTCGGAAGCTCCCAAAGAGATCTGGGCTCCTAAAATGATTGCTTGCCACACCATGCCTTACCCTTATGCAGTTTTCTACTGCCATAGCCAGGAGAGTGAGAACAGGTTGTATCAGGGTTTGCTTGCTGGGGAGAATGGAGAGAAAGTTGAAGCTGCTGCCGTTTGTCACTTTGATACTTCTCAGTGGGATCCTGATCATGTGGCGTTCAGTGTGCTTGGTACTCAACCTGGAAGCTCCCCGGTCTGCCATTTCTTTCCTTCTGATAATCTAGTTTGGGTGCCATTGCCAGCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000325 GO:0000326 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009791 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

296

Amino Acids

32.95

Weight (kDa)

6.24

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49320
fragaria_vesca	FvH4_2g08510 FvH4_2g08530
malus_domestica	MD05G1068000.v1.1 MD10G1077900.v1.1 MD10G1078000.v1.1
prunus_persica	Prupe.8G098700_v2.0.a1 Prupe.8G098900_v2.0.a1 Prupe.8G099700_v2.0.a1 Prupe.8G099900_v2.0.a1
pyrus_communis	pycom05g05900 pycom10g06110 pycom10g06130 pycom289g00010
rosa_chinensis	RchiOBHm_Chr6g0263891
rosa_laevigata	RLG00000014306
rosa_multiflora	Rmu_sc0002112.1_g000012
rosa_roxburghii	Rroxscaffold_176G00431280 Rroxscaffold_7G00203800
rosa_rugosa	Rorug06G0006700
rosa_samantha	Rh6AG126700 Rh6BG123000 Rh6CG121400 Rh6DG108900
rosa_wichuraiana	Rw6G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	868
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	3 cut(s)	204, 773, 786
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	461
AfaI	GTAC	1 cut(s)	811
AfiI	CCNNNNNNNGG	2 cut(s)	449, 679
AflIII	ACRYGT	1 cut(s)	585
AgsI	TTSAA	5 cut(s)	62, 368, 440, 532, 740
AjnI	CCWGG	2 cut(s)	678, 817
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	7 cut(s)	323, 503, 553, 599, 743, 825, 881
AluI	AGCT	7 cut(s)	323, 503, 553, 599, 743, 825, 881
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	3 cut(s)	204, 773, 786
AoxI	GGCC	2 cut(s)	309, 456
ApeKI	GCWGC	3 cut(s)	503, 743, 746
ApoI	RAATTY	1 cut(s)	461
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	830
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	311
BamHI	GGATCC	1 cut(s)	778
BanI	GGYRCC	1 cut(s)	868
BanII	GRGCYC	1 cut(s)	619
BbsI	GAAGAC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	490, 730, 733
BccI	CCATC	1 cut(s)	452
BceAI	ACGGC	2 cut(s)	392, 734
BciT130I	CCWGG	2 cut(s)	680, 819
BclI	TGATCA	1 cut(s)	784
BcnI	CCSGG	1 cut(s)	830
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	860
BglII	AGATCT	2 cut(s)	238, 609
BisI	GCNGC	3 cut(s)	504, 744, 747
BlsI	GCNGC	3 cut(s)	505, 745, 748
Bme1390I	CCNGG	3 cut(s)	680, 819, 830
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	5 cut(s)	26, 207, 618, 780, 870
BmrFI	CCNGG	3 cut(s)	680, 819, 830
BpiI	GAAGAC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	539
BpuMI	CCSGG	1 cut(s)	830
BsaBI	GATNNNNATC	2 cut(s)	156, 783
BsaJI	CCNNGG	2 cut(s)	408, 828
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 679
Bse3DI	GCAATG	1 cut(s)	872
Bse8I	GATNNNNATC	2 cut(s)	156, 783
BseBI	CCWGG	2 cut(s)	680, 819
BseDI	CCNNGG	2 cut(s)	408, 828
BseJI	GATNNNNATC	2 cut(s)	156, 783
BseLI	CCNNNNNNNGG	2 cut(s)	449, 679
BseMI	GCAATG	1 cut(s)	872
BseMII	CTCAG	1 cut(s)	785
BseXI	GCAGC	3 cut(s)	490, 730, 733
BseYI	CCCAGC	1 cut(s)	716
BshFI	GGCC	2 cut(s)	311, 458
BshNI	GGYRCC	1 cut(s)	868
BsiSI	CCGG	1 cut(s)	830
BslI	CCNNNNNNNGG	2 cut(s)	449, 679
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	311, 458
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	6 cut(s)	157, 196, 238, 609, 778, 784
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	2 cut(s)	311, 458
BspCNI	CTCAG	1 cut(s)	784
BspLI	GGNNCC	5 cut(s)	26, 207, 618, 780, 870
BspPI	GGATC	3 cut(s)	204, 773, 786
BspT107I	GGYRCC	1 cut(s)	868
BsrDI	GCAATG	1 cut(s)	872
BssECI	CCNNGG	2 cut(s)	408, 828
BssMI	GATC	6 cut(s)	157, 196, 238, 609, 778, 784
Bst2UI	CCWGG	2 cut(s)	680, 819
Bst6I	CTCTTC	2 cut(s)	292, 377
BstC8I	GCNNGC	3 cut(s)	634, 714, 879
BstDEI	CTNAG	1 cut(s)	771
BstDSI	CCRYGG	1 cut(s)	408
BstKTI	GATC	6 cut(s)	160, 199, 241, 612, 781, 787
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	6 cut(s)	157, 196, 238, 609, 778, 784
BstNI	CCWGG	2 cut(s)	680, 819
BstSCI	CCNGG	3 cut(s)	678, 817, 828
BstV1I	GCAGC	3 cut(s)	490, 730, 733
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	3 cut(s)	238, 609, 778
BstXI	CCANNNNNNTGG	1 cut(s)	409
BstYI	RGATCY	3 cut(s)	238, 609, 778
BsuRI	GGCC	2 cut(s)	311, 458
BtgI	CCRYGG	1 cut(s)	408
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	3 cut(s)	97, 779, 805
Cac8I	GCNNGC	3 cut(s)	634, 714, 879
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	810
CviAII	CATG	5 cut(s)	193, 202, 487, 643, 788
CviQI	GTAC	1 cut(s)	810
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	6 cut(s)	159, 198, 240, 611, 780, 786
DpnII	GATC	6 cut(s)	157, 196, 238, 609, 778, 784
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	2 cut(s)	292, 377
EarI	CTCTTC	2 cut(s)	292, 377
Eco24I	GRGCYC	1 cut(s)	619
Eco47I	GGWCC	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	678, 817
EcoT38I	GRGCYC	1 cut(s)	619
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	5 cut(s)	196, 205, 490, 646, 791
FatI	CATG	5 cut(s)	192, 201, 486, 642, 787
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	3 cut(s)	504, 744, 747
FriOI	GRGCYC	1 cut(s)	619
Fsp4HI	GCNGC	3 cut(s)	504, 744, 747
FspBI	CTAG	1 cut(s)	860
GluI	GCNGC	3 cut(s)	504, 744, 747
GsaI	CCCAGC	1 cut(s)	720
HaeIII	GGCC	2 cut(s)	311, 458
HapII	CCGG	1 cut(s)	830
Hin1II	CATG	5 cut(s)	196, 205, 490, 646, 791
HinfI	GANTC	5 cut(s)	143, 326, 389, 482, 528
HpaII	CCGG	1 cut(s)	830
HphI	GGTGA	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	595, 853
Hpy188III	TCNNGA	2 cut(s)	556, 782
HpyAV	CCTTC	4 cut(s)	345, 371, 446, 858
HpyCH4IV	ACGT	2 cut(s)	430, 587
HpyCH4V	TGCA	3 cut(s)	80, 577, 659
HpyF3I	CTNAG	1 cut(s)	771
HpySE526I	ACGT	2 cut(s)	430, 587
Hsp92II	CATG	5 cut(s)	196, 205, 490, 646, 791
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	6 cut(s)	157, 196, 238, 609, 778, 784
LmnI	GCTCC	4 cut(s)	24, 604, 622, 830
Lsp1109I	GCAGC	3 cut(s)	490, 730, 733
MaeI	CTAG	1 cut(s)	860
MaeII	ACGT	2 cut(s)	430, 587
MaeIII	GTNAC	2 cut(s)	431, 755
MalI	GATC	6 cut(s)	159, 198, 240, 611, 780, 786
MboI	GATC	6 cut(s)	157, 196, 238, 609, 778, 784
MboII	GAAGA	7 cut(s)	112, 152, 217, 279, 329, 356, 364
MflI	RGATCY	3 cut(s)	238, 609, 778
MhlI	GDGCHC	1 cut(s)	619
MlsI	TGGCCA	1 cut(s)	311
MluCI	AATT	2 cut(s)	461, 580
MluNI	TGGCCA	1 cut(s)	311
MlyI	GAGTC	2 cut(s)	137, 383
MnlI	CCTC	8 cut(s)	38, 80, 242, 349, 362, 448, 484, 518
Mox20I	TGGCCA	1 cut(s)	311
MscI	TGGCCA	1 cut(s)	311
MseI	TTAA	1 cut(s)	539
Msp20I	TGGCCA	1 cut(s)	311
MspI	CCGG	1 cut(s)	830
MspR9I	CCNGG	3 cut(s)	680, 819, 830
MvaI	CCWGG	2 cut(s)	680, 819
NciI	CCSGG	1 cut(s)	830
NdeII	GATC	6 cut(s)	157, 196, 238, 609, 778, 784
NlaIII	CATG	5 cut(s)	196, 205, 490, 646, 791
NlaIV	GGNNCC	5 cut(s)	26, 207, 618, 780, 870
NmuCI	GTSAC	2 cut(s)	431, 755
PfeI	GAWTC	3 cut(s)	326, 482, 528
PkrI	GCNGC	3 cut(s)	505, 745, 748
PleI	GAGTC	2 cut(s)	137, 383
PpsI	GAGTC	2 cut(s)	137, 383
Psp6I	CCWGG	2 cut(s)	678, 817
PspFI	CCCAGC	1 cut(s)	716
PspGI	CCWGG	2 cut(s)	678, 817
PspN4I	GGNNCC	5 cut(s)	26, 207, 618, 780, 870
PspPI	GGNCC	1 cut(s)	205
PsuI	RGATCY	3 cut(s)	238, 609, 778
RsaI	GTAC	1 cut(s)	811
RsaNI	GTAC	1 cut(s)	810
SaqAI	TTAA	1 cut(s)	539
SatI	GCNGC	3 cut(s)	504, 744, 747
Sau3AI	GATC	6 cut(s)	157, 196, 238, 609, 778, 784
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	2 cut(s)	137, 383
ScrFI	CCNGG	3 cut(s)	680, 819, 830
SduI	GDGCHC	1 cut(s)	619
SinI	GGWCC	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	2 cut(s)	461, 580
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	860
StyD4I	CCNGG	3 cut(s)	678, 817, 828
TaiI	ACGT	2 cut(s)	433, 590
TasI	AATT	2 cut(s)	461, 580
TfiI	GAWTC	3 cut(s)	326, 482, 528
Tru1I	TTAA	1 cut(s)	539
Tru9I	TTAA	1 cut(s)	539
TscAI	CASTG	3 cut(s)	97, 779, 805
TseFI	GTSAC	2 cut(s)	431, 755
TseI	GCWGC	3 cut(s)	503, 743, 746
Tsp45I	GTSAC	2 cut(s)	431, 755
TspDTI	ATGAA	1 cut(s)	171
TspRI	CASTG	3 cut(s)	97, 779, 805
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	461
XspI	CTAG	1 cut(s)	860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.