Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007143

Physical Location & Seq

Genomic Coordinates Forward (+)

12966082 .. 12967655

Gene Structure 1574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1068000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCGTCTTTCATTTGTTTCTTGGAGCCTCGTCTCATACGCACTACTTGTTTTATTGAATGCACAAGGAAGCAGTGGCAGGAAGATTATTACTCTTGGAAATGGGAAAGACATCAAAAAAGAAGACTCCATTGATTTACATCAAGGCGGTGATGATGGTCGTTCATCATCTCACATGGATCACATGGACCCTGCCCTAAATGTTTTCTTCACCCCAAAAGATCTCAAACGAGGCAAAAAAATGCCCATATACTTCTCAAAAAATAGCTCTTCCACGTCTCCAAGACTTTTGGCCAGAGAAGAAGCTGATTCCATTCCTTTCTCAATCTCAAACCTCCCATACCTTCTTCAACTCTTCTCTTTCCCCCAAGACTCTACCCAAGCCAAAGCCATCGAATACACACTAACCCAATGTGACCTTCAACCCATCAAAGGAGAGGCCAAATTTTGTGCTACCTCGTTAGAATCCATGCTTGATTTTGTCGCTGCCCTCTTTGGACAAAATACCCAATTCAAAGTCTTAACCACCACTCAGCTCAAGGACTCAACCACCCTTTTGCAAAATTACACCTTTTCGGAAGCTCCCAAAGAGATCTGGGCTCCTAAAATGATTGCTTGCCACACCATGCCTTACCCTTATGCAGTTTTCTACTGCCATAGCCAGGAGAGTGAGAACAGGTTGTATCAAGTTTTGCTTGCCGGGGAGAATGGAGAGAAAGTTGAAGCTGCTGCCGTTTGTCACTTTGATACTTCTCAGTGGGATCCTGATCATGTGGCGTTCAGTGTGCTTGGTACTCAACCTGGAAGCTCCCCGGTCTGCCATTTCTTTCCTTCTGATAATCTAGTTTGGGTGCCATTGCCAGCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000325 GO:0000326 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009791 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

290

Amino Acids

32.16

Weight (kDa)

5.74

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BURP	PF03181	68 - 285	1.1e-82	BURP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49320
fragaria_vesca	FvH4_2g08510 FvH4_2g08530
malus_domestica	MD05G1068000.v1.1 MD10G1077900.v1.1 MD10G1078000.v1.1
prunus_persica	Prupe.8G098700_v2.0.a1 Prupe.8G098900_v2.0.a1 Prupe.8G099700_v2.0.a1 Prupe.8G099900_v2.0.a1
pyrus_communis	pycom05g05900 pycom10g06110 pycom10g06130 pycom289g00010
rosa_chinensis	RchiOBHm_Chr6g0263891
rosa_laevigata	RLG00000014306
rosa_multiflora	Rmu_sc0002112.1_g000012
rosa_roxburghii	Rroxscaffold_176G00431280 Rroxscaffold_7G00203800
rosa_rugosa	Rorug06G0006700
rosa_samantha	Rh6AG126700 Rh6BG123000 Rh6CG121400 Rh6DG108900
rosa_wichuraiana	Rw6G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	850
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	3 cut(s)	186, 755, 768
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	443
AfaI	GTAC	1 cut(s)	793
AfiI	CCNNNNNNNGG	2 cut(s)	431, 661
AgsI	TTSAA	5 cut(s)	58, 350, 422, 514, 722
AjiI	CACGTC	1 cut(s)	276
AjnI	CCWGG	2 cut(s)	660, 799
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AluBI	AGCT	7 cut(s)	267, 305, 535, 581, 725, 807, 863
AluI	AGCT	7 cut(s)	267, 305, 535, 581, 725, 807, 863
Alw26I	GTCTC	2 cut(s)	37, 282
AlwI	GGATC	3 cut(s)	186, 755, 768
AoxI	GGCC	2 cut(s)	291, 438
ApeKI	GCWGC	3 cut(s)	485, 725, 728
ApoI	RAATTY	1 cut(s)	443
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	2 cut(s)	700, 812
AsuHPI	GGTGA	2 cut(s)	161, 202
AvaII	GGWCC	1 cut(s)	187
BalI	TGGCCA	1 cut(s)	293
BamHI	GGATCC	1 cut(s)	760
BanI	GGYRCC	1 cut(s)	850
BanII	GRGCYC	1 cut(s)	601
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	3 cut(s)	472, 712, 715
BccI	CCATC	3 cut(s)	149, 398, 434
BceAI	ACGGC	1 cut(s)	716
BciT130I	CCWGG	2 cut(s)	662, 801
BclI	TGATCA	1 cut(s)	766
BcnI	CCSGG	2 cut(s)	700, 812
BcoDI	GTCTC	2 cut(s)	37, 282
BfaI	CTAG	1 cut(s)	842
BglII	AGATCT	2 cut(s)	220, 591
BisI	GCNGC	3 cut(s)	486, 726, 729
BlsI	GCNGC	3 cut(s)	487, 727, 730
Bme1390I	CCNGG	4 cut(s)	662, 700, 801, 812
Bme18I	GGWCC	1 cut(s)	187
BmgBI	CACGTC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	5 cut(s)	26, 189, 600, 762, 852
BmrFI	CCNGG	4 cut(s)	662, 700, 801, 812
BpiI	GAAGAC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	2 cut(s)	700, 812
BsaBI	GATNNNNATC	2 cut(s)	138, 765
BsaJI	CCNNGG	2 cut(s)	699, 810
BsaXI	ACNNNNNCTCC	2 cut(s)	702, 732
Bsc4I	CCNNNNNNNGG	2 cut(s)	431, 661
Bse3DI	GCAATG	1 cut(s)	854
Bse8I	GATNNNNATC	2 cut(s)	138, 765
BseBI	CCWGG	2 cut(s)	662, 801
BseDI	CCNNGG	2 cut(s)	699, 810
BseJI	GATNNNNATC	2 cut(s)	138, 765
BseLI	CCNNNNNNNGG	2 cut(s)	431, 661
BseMI	GCAATG	1 cut(s)	854
BseMII	CTCAG	2 cut(s)	545, 767
BseXI	GCAGC	3 cut(s)	472, 712, 715
BshFI	GGCC	2 cut(s)	293, 440
BshNI	GGYRCC	1 cut(s)	850
BsiSI	CCGG	2 cut(s)	699, 812
BslI	CCNNNNNNNGG	2 cut(s)	431, 661
BsmAI	GTCTC	2 cut(s)	37, 282
BsmBI	CGTCTC	2 cut(s)	37, 282
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	293, 440
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp143I	GATC	5 cut(s)	178, 220, 591, 760, 766
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	2 cut(s)	293, 440
BspCNI	CTCAG	2 cut(s)	544, 766
BspLI	GGNNCC	5 cut(s)	26, 189, 600, 762, 852
BspPI	GGATC	3 cut(s)	186, 755, 768
BspQI	GCTCTTC	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	850
BsrDI	GCAATG	1 cut(s)	854
BssECI	CCNNGG	2 cut(s)	699, 810
BssMI	GATC	5 cut(s)	178, 220, 591, 760, 766
Bst2UI	CCWGG	2 cut(s)	662, 801
Bst6I	CTCTTC	2 cut(s)	274, 359
BstC8I	GCNNGC	3 cut(s)	616, 696, 861
BstDEI	CTNAG	2 cut(s)	531, 753
BstKTI	GATC	5 cut(s)	181, 223, 594, 763, 769
BstMAI	GTCTC	2 cut(s)	37, 282
BstMBI	GATC	5 cut(s)	178, 220, 591, 760, 766
BstNI	CCWGG	2 cut(s)	662, 801
BstSCI	CCNGG	4 cut(s)	660, 698, 799, 810
BstV1I	GCAGC	3 cut(s)	472, 712, 715
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	3 cut(s)	220, 591, 760
BstYI	RGATCY	3 cut(s)	220, 591, 760
BsuRI	GGCC	2 cut(s)	293, 440
BtrI	CACGTC	1 cut(s)	276
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	3 cut(s)	79, 761, 787
Cac8I	GCNNGC	3 cut(s)	616, 696, 861
Cfr13I	GGNCC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	792
CviAII	CATG	5 cut(s)	175, 184, 469, 625, 770
CviQI	GTAC	1 cut(s)	792
DdeI	CTNAG	2 cut(s)	531, 753
DpnI	GATC	5 cut(s)	180, 222, 593, 762, 768
DpnII	GATC	5 cut(s)	178, 220, 591, 760, 766
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	2 cut(s)	274, 359
EarI	CTCTTC	2 cut(s)	274, 359
Eco24I	GRGCYC	1 cut(s)	601
Eco47I	GGWCC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	660, 799
EcoT38I	GRGCYC	1 cut(s)	601
Esp3I	CGTCTC	2 cut(s)	37, 282
FaeI	CATG	5 cut(s)	178, 187, 472, 628, 773
FalI	AAGNNNNNCTT	2 cut(s)	678, 710
FatI	CATG	5 cut(s)	174, 183, 468, 624, 769
FbaI	TGATCA	1 cut(s)	766
Fnu4HI	GCNGC	3 cut(s)	486, 726, 729
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	3 cut(s)	486, 726, 729
FspBI	CTAG	1 cut(s)	842
GluI	GCNGC	3 cut(s)	486, 726, 729
HaeIII	GGCC	2 cut(s)	293, 440
HapII	CCGG	2 cut(s)	699, 812
Hin1II	CATG	5 cut(s)	178, 187, 472, 628, 773
HinfI	GANTC	5 cut(s)	125, 308, 371, 464, 542
HpaII	CCGG	2 cut(s)	699, 812
HphI	GGTGA	2 cut(s)	161, 202
Hpy188I	TCNGA	2 cut(s)	577, 835
Hpy188III	TCNNGA	1 cut(s)	764
HpyAV	CCTTC	3 cut(s)	353, 428, 840
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	3 cut(s)	62, 559, 641
HpyF3I	CTNAG	2 cut(s)	531, 753
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	5 cut(s)	178, 187, 472, 628, 773
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	5 cut(s)	178, 220, 591, 760, 766
LguI	GCTCTTC	1 cut(s)	274
LmnI	GCTCC	4 cut(s)	24, 586, 604, 812
Lsp1109I	GCAGC	3 cut(s)	472, 712, 715
MaeI	CTAG	1 cut(s)	842
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	2 cut(s)	413, 737
MalI	GATC	5 cut(s)	180, 222, 593, 762, 768
MboI	GATC	5 cut(s)	178, 220, 591, 760, 766
MboII	GAAGA	7 cut(s)	94, 134, 199, 261, 311, 338, 346
MflI	RGATCY	3 cut(s)	220, 591, 760
MhlI	GDGCHC	1 cut(s)	601
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	3 cut(s)	443, 509, 562
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	3 cut(s)	119, 365, 536
MnlI	CCTC	6 cut(s)	38, 224, 344, 430, 466, 500
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	1 cut(s)	521
Msp20I	TGGCCA	1 cut(s)	293
MspI	CCGG	2 cut(s)	699, 812
MspR9I	CCNGG	4 cut(s)	662, 700, 801, 812
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	2 cut(s)	662, 801
NciI	CCSGG	2 cut(s)	700, 812
NdeII	GATC	5 cut(s)	178, 220, 591, 760, 766
NlaIII	CATG	5 cut(s)	178, 187, 472, 628, 773
NlaIV	GGNNCC	5 cut(s)	26, 189, 600, 762, 852
NmuCI	GTSAC	2 cut(s)	413, 737
PciSI	GCTCTTC	1 cut(s)	274
PctI	GAATGC	1 cut(s)	64
PfeI	GAWTC	2 cut(s)	308, 464
PkrI	GCNGC	3 cut(s)	487, 727, 730
PleI	GAGTC	3 cut(s)	119, 365, 536
PpsI	GAGTC	3 cut(s)	119, 365, 536
Psp6I	CCWGG	2 cut(s)	660, 799
PspGI	CCWGG	2 cut(s)	660, 799
PspN4I	GGNNCC	5 cut(s)	26, 189, 600, 762, 852
PspPI	GGNCC	1 cut(s)	187
PsuI	RGATCY	3 cut(s)	220, 591, 760
RsaI	GTAC	1 cut(s)	793
RsaNI	GTAC	1 cut(s)	792
SapI	GCTCTTC	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	3 cut(s)	486, 726, 729
Sau3AI	GATC	5 cut(s)	178, 220, 591, 760, 766
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	3 cut(s)	119, 365, 536
ScrFI	CCNGG	4 cut(s)	662, 700, 801, 812
SduI	GDGCHC	1 cut(s)	601
SinI	GGWCC	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	3 cut(s)	443, 509, 562
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	1 cut(s)	842
StyD4I	CCNGG	4 cut(s)	660, 698, 799, 810
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	393
TasI	AATT	3 cut(s)	443, 509, 562
TfiI	GAWTC	2 cut(s)	308, 464
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	3 cut(s)	79, 761, 787
TseFI	GTSAC	2 cut(s)	413, 737
TseI	GCWGC	3 cut(s)	485, 725, 728
Tsp45I	GTSAC	2 cut(s)	413, 737
TspDTI	ATGAA	1 cut(s)	153
TspRI	CASTG	3 cut(s)	79, 761, 787
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	1 cut(s)	443
XspI	CTAG	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.