Rroxscaffold_176G00431280

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000176
OG0007143
Physical Location & Seq
Reverse (-)
840481 .. 841797
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_176G00431280.1

Sequence Viewer

Length: 903 bp
ATGGAATTGAGTTCTTTTAAGGGAAGAATCATGGGTTCAAGTCTTGCTTTCTGGTGCCCCTTACTTCATCTTCTTCTACTAGTGCTGGTTATGTGTGCTCAAGGAATTGCAGGCAGGAAGCTGACTGAGGAACAGCTGGAAACAACACACAAATTGATGAAGCCTATGGATCAAAGAATTCAAGCTCATCATTCATCATCCCACATGGATCACATGGACCCTTCACATATGATTTTCTTCACCATCAAGGACTTGAAAGTTGGGAAAACAATGCCAATCTATTTCCCAAAAAGAGACCCTTCAAAATCTCCTCGTTTTTTACCAAGATCTCAAGCTGATTCAATTCCTTTCTCATCAAAACAACTCCCCCACCTCCTTGAGTTCTTCTCTTTCTCCAAAGATTCTCACCAAGCCAAAGCCATGGAAGACACTATTAGGCAATGTGAGATTGAACCCATCAAAGGAGAAACCAAGTTCTGTCCCACTTCCTTAGAATCCATGCTGGATTTCACTCATAGTATGTTGGGACCAAACACCCGTTTCACTGCTGCAGCCACTGCCCATCTCACAAATTCAACAACCCTGTTCCAGAATTATACCATTTTGAAAGAGCCTAAAGAGATCTTTGCTCCAAAGATGGTGGCATGTCACAATATGCCTTACCCTTATGCAGTTTTCTATTGCCATAGCCAACAAAGTGTGAACAAGGTTTTCAAAGTTGAATTAGGGGGTGAAAATGGAGATAGAGTTGACGCTGTTGCTGTCTGCCACTTAGATACTTCTGATTGGAGCCCTAATCATGCATCATTCAGTGTGCTCAGGATCAAGCCTGGGACTTCTCCTGTGTGCCATTTCTTTCCTGCTGATAATCTTGTATGGGTTCCAACATCAACCTCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

300

Amino Acids

33.85

Weight (kDa)

8.1

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 78 - 295 4.8e-85 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 54
AclWI GGATC 3 cut(s) 177, 216, 830
AcsI RAATTY 2 cut(s) 177, 571
AfiI CCNNNNNNNGG 1 cut(s) 461
AhlI ACTAGT 1 cut(s) 79
AjnI CCWGG 1 cut(s) 829
AluBI AGCT 4 cut(s) 121, 136, 185, 335
AluI AGCT 4 cut(s) 121, 136, 185, 335
Alw21I GWGCWC 2 cut(s) 100, 819
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 3 cut(s) 177, 216, 830
AlwNI CAGNNNCTG 1 cut(s) 557
ApeKI GCWGC 2 cut(s) 548, 551
ApoI RAATTY 2 cut(s) 177, 571
AspS9I GGNCC 2 cut(s) 217, 527
AsuHPI GGTGA 3 cut(s) 232, 398, 743
AvaII GGWCC 2 cut(s) 217, 527
BaeGI GKGCMC 1 cut(s) 59
BanI GGYRCC 1 cut(s) 54
BanII GRGCYC 1 cut(s) 794
BbsI GAAGAC 1 cut(s) 432
Bbv12I GWGCWC 2 cut(s) 100, 819
BbvI GCAGC 2 cut(s) 535, 563
BccI CCATC 4 cut(s) 251, 464, 570, 631
BciT130I CCWGG 1 cut(s) 831
BcoDI GTCTC 1 cut(s) 288
BcuI ACTAGT 1 cut(s) 79
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 549
BglII AGATCT 2 cut(s) 326, 621
BisI GCNGC 2 cut(s) 549, 552
BlsI GCNGC 2 cut(s) 550, 553
Bme1390I CCNGG 1 cut(s) 831
Bme18I GGWCC 2 cut(s) 217, 527
BmgT120I GGNCC 2 cut(s) 217, 527
BmiI GGNNCC 5 cut(s) 56, 219, 528, 791, 882
BmrFI CCNGG 1 cut(s) 831
BmsI GCATC 1 cut(s) 812
BpiI GAAGAC 1 cut(s) 432
BplI GAGNNNNNCTC 2 cut(s) 371, 403
Bpu10I CCTNAGC 1 cut(s) 818
BpuEI CTTGAG 3 cut(s) 84, 315, 398
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 420, 830
BsaXI ACNNNNNCTCC 2 cut(s) 732, 762
Bsc4I CCNNNNNNNGG 1 cut(s) 461
Bse3DI GCAATG 1 cut(s) 446
BseBI CCWGG 1 cut(s) 831
BseDI CCNNGG 2 cut(s) 420, 830
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 461
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 2 cut(s) 117, 832
BseRI GAGGAG 1 cut(s) 300
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 2 cut(s) 535, 563
BshNI GGYRCC 1 cut(s) 54
BsiHKAI GWGCWC 2 cut(s) 100, 819
BslFI GGGAC 3 cut(s) 465, 540, 847
BslI CCNNNNNNNGG 1 cut(s) 461
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 3 cut(s) 465, 540, 847
Bso31I GGTCTC 1 cut(s) 288
Bsp1286I GDGCHC 4 cut(s) 59, 100, 794, 819
Bsp143I GATC 5 cut(s) 169, 208, 326, 621, 822
Bsp19I CCATGG 1 cut(s) 420
BspCNI CTCAG 2 cut(s) 118, 831
BspLI GGNNCC 5 cut(s) 56, 219, 528, 791, 882
BspMAI CTGCAG 1 cut(s) 553
BspPI GGATC 3 cut(s) 177, 216, 830
BspT107I GGYRCC 1 cut(s) 54
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 446
BssECI CCNNGG 2 cut(s) 420, 830
BssMI GATC 5 cut(s) 169, 208, 326, 621, 822
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 831
BstAPI GCANNNNNTGC 1 cut(s) 557
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 5 cut(s) 126, 490, 772, 818, 895
BstDSI CCRYGG 1 cut(s) 420
BstF5I GGATG 1 cut(s) 197
BstKTI GATC 5 cut(s) 172, 211, 329, 624, 825
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 5 cut(s) 169, 208, 326, 621, 822
BstMWI GCNNNNNNNGC 1 cut(s) 557
BstNI CCWGG 1 cut(s) 831
BstNSI RCATGY 1 cut(s) 648
BstSCI CCNGG 1 cut(s) 829
BstSFI CTRYAG 1 cut(s) 549
BstSLI GKGCMC 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 535, 563
BstV2I GAAGAC 1 cut(s) 432
BstX2I RGATCY 2 cut(s) 326, 621
BstXI CCANNNNNNTGG 1 cut(s) 421
BstYI RGATCY 2 cut(s) 326, 621
BtgI CCRYGG 1 cut(s) 420
BtsCI GGATG 1 cut(s) 197
BtsI GCAGTG 2 cut(s) 543, 555
BtsIMutI CAGTG 4 cut(s) 543, 555, 817, 903
Cac8I GCNNGC 1 cut(s) 112
CaiI CAGNNNCTG 1 cut(s) 557
Cfr13I GGNCC 2 cut(s) 217, 527
CseI GACGC 1 cut(s) 761
CspCI CAANNNNNGTGG 2 cut(s) 621, 656
CviAII CATG 7 cut(s) 31, 205, 214, 421, 499, 645, 800
DdeI CTNAG 5 cut(s) 126, 490, 772, 818, 895
DpnI GATC 5 cut(s) 171, 210, 328, 623, 824
DpnII GATC 5 cut(s) 169, 208, 326, 621, 822
Eco130I CCWWGG 1 cut(s) 420
Eco24I GRGCYC 1 cut(s) 794
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 2 cut(s) 217, 527
EcoRI GAATTC 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 829
EcoT14I CCWWGG 1 cut(s) 420
EcoT22I ATGCAT 1 cut(s) 805
EcoT38I GRGCYC 1 cut(s) 794
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 7 cut(s) 34, 208, 217, 424, 502, 648, 803
FalI AAGNNNNNCTT 4 cut(s) 31, 63, 283, 315
FaqI GGGAC 3 cut(s) 465, 540, 847
FatI CATG 7 cut(s) 30, 204, 213, 420, 498, 644, 799
FauNDI CATATG 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 549, 552
FokI GGATG 1 cut(s) 184
FriOI GRGCYC 1 cut(s) 794
Fsp4HI GCNGC 2 cut(s) 549, 552
FspBI CTAG 1 cut(s) 80
GluI GCNGC 2 cut(s) 549, 552
HgaI GACGC 1 cut(s) 761
Hin1II CATG 7 cut(s) 34, 208, 217, 424, 502, 648, 803
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HinfI GANTC 4 cut(s) 27, 338, 401, 494
HphI GGTGA 3 cut(s) 232, 398, 743
Hpy166II GTNNAC 2 cut(s) 703, 751
Hpy188I TCNGA 1 cut(s) 784
Hpy188III TCNNGA 2 cut(s) 589, 820
Hpy8I GTNNAC 2 cut(s) 703, 751
HpyAV CCTTC 2 cut(s) 231, 309
HpyCH4V TGCA 4 cut(s) 110, 551, 671, 803
HpyF10VI GCNNNNNNNGC 1 cut(s) 557
HpyF3I CTNAG 5 cut(s) 126, 490, 772, 818, 895
Hsp92II CATG 7 cut(s) 34, 208, 217, 424, 502, 648, 803
Kzo9I GATC 5 cut(s) 169, 208, 326, 621, 822
LmnI GCTCC 2 cut(s) 634, 789
Lsp1109I GCAGC 2 cut(s) 535, 563
LweI GCATC 1 cut(s) 812
MaeI CTAG 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 647
MalI GATC 5 cut(s) 171, 210, 328, 623, 824
MboI GATC 5 cut(s) 169, 208, 326, 621, 822
MboII GAAGA 6 cut(s) 36, 62, 65, 229, 376, 437
MflI RGATCY 2 cut(s) 326, 621
MhlI GDGCHC 4 cut(s) 59, 100, 794, 819
MluCI AATT 8 cut(s) 5, 105, 152, 177, 342, 571, 592, 722
MnlI CCTC 3 cut(s) 121, 321, 383
Mph1103I ATGCAT 1 cut(s) 805
MseI TTAA 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 136
MspR9I CCNGG 1 cut(s) 831
MvaI CCWGG 1 cut(s) 831
MwoI GCNNNNNNNGC 1 cut(s) 557
NcoI CCATGG 1 cut(s) 420
NdeI CATATG 1 cut(s) 228
NdeII GATC 5 cut(s) 169, 208, 326, 621, 822
NlaIII CATG 7 cut(s) 34, 208, 217, 424, 502, 648, 803
NlaIV GGNNCC 5 cut(s) 56, 219, 528, 791, 882
NmuCI GTSAC 1 cut(s) 647
NsiI ATGCAT 1 cut(s) 805
NspI RCATGY 1 cut(s) 648
PfeI GAWTC 4 cut(s) 27, 338, 401, 494
PkrI GCNGC 2 cut(s) 550, 553
Psp6I CCWGG 1 cut(s) 829
PspGI CCWGG 1 cut(s) 829
PspN4I GGNNCC 5 cut(s) 56, 219, 528, 791, 882
PspPI GGNCC 2 cut(s) 217, 527
PstI CTGCAG 1 cut(s) 553
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 2 cut(s) 326, 621
PvuII CAGCTG 1 cut(s) 136
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 2 cut(s) 549, 552
Sau3AI GATC 5 cut(s) 169, 208, 326, 621, 822
Sau96I GGNCC 2 cut(s) 217, 527
ScrFI CCNGG 1 cut(s) 831
SduI GDGCHC 4 cut(s) 59, 100, 794, 819
SetI ASST 7 cut(s) 123, 138, 187, 337, 375, 711, 896
SfaNI GCATC 1 cut(s) 812
SfcI CTRYAG 1 cut(s) 549
SinI GGWCC 2 cut(s) 217, 527
SmlI CTYRAG 3 cut(s) 99, 330, 377
SmoI CTYRAG 3 cut(s) 99, 330, 377
SpeI ACTAGT 1 cut(s) 79
Sse9I AATT 8 cut(s) 5, 105, 152, 177, 342, 571, 592, 722
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 829
StyI CCWWGG 1 cut(s) 420
TasI AATT 8 cut(s) 5, 105, 152, 177, 342, 571, 592, 722
TfiI GAWTC 4 cut(s) 27, 338, 401, 494
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 4 cut(s) 550, 562, 817, 903
TseFI GTSAC 1 cut(s) 647
TseI GCWGC 2 cut(s) 548, 551
Tsp45I GTSAC 1 cut(s) 647
TspDTI ATGAA 3 cut(s) 56, 173, 183
TspRI CASTG 4 cut(s) 550, 562, 817, 903
VpaK11BI GGWCC 2 cut(s) 217, 527
XapI RAATTY 2 cut(s) 177, 571
XceI RCATGY 1 cut(s) 648
XspI CTAG 1 cut(s) 80
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.