Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007143

Physical Location & Seq

Genomic Coordinates Reverse (-)

7468746 .. 7470250

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCGTCTATCATTTGCATCTTCGAGCCTGCTTATCTTACCTCTTCTACTTGTCTTATTGATTGCAGAAGTAAATAGTGCGAGGAAGATCACTATTGGAAACGGGGATGAAGAACATCTACTGCTACCAACCCATGATCATGATCACTCATCATCATCTTCAAACAAGAATCATATGGACCCCTCCCTAAATGTTTTCTTCAACCCAGTAGATCTCAGGCTAGGAAAAACAATGCCCATATATTTTTCCAAAAGAGGCCCTTCTGTTTCTCCCAAGTTGCTTTCTAAACAAGAAGCTGATTCCATACCTTTCTCAACCTCAAACCTTCCATACCTTCTTGAGTTCTTCTCATTTCTCCAGGACTCCCCCCAAGCCAAAGCCATAGAATACACACTAACGCAGTGTGACCTTGAACCCATCAAAGGAGAGTCCAGGTTCTGTGGCACCTCCCTAGAATCCATGGTTGATTTTGCAACTGCCCTATTTGGATCAGGCACCCAACTAAAGGTCCTGACCACCTCCCCTCTCTCAAACACAGCCCCTCTTCTACAGAACTACACCGTTTTGGAAACACCAAATGAGATCCATGCTCCCAGAATGATTGGCTGCCACACCATGCCTTACCCTTACGCAGTTTTCTACTGCCATAGCCAAGAAAGCGAGAACAAGCTGTTCCAGGTTTGGCTGGGCGGGGAGAACGGAGAGAGGATTCATGCTGCTGCTGTATGCCACATGGATACTTCTCAGTGGGACAGCAGCCATGTGGCGTTCCAAGTGCTTGGGGCTGAGCCTGGAACCTCTCCTGTCTGCCATTTCTTTCCTTCAGATAATCTAGTCTGGGTGCCATCATTGCCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000325 GO:0000326 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009791 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

287

Amino Acids

31.57

Weight (kDa)

5.47

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BURP	PF03181	65 - 282	8.7e-77	BURP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49320
fragaria_vesca	FvH4_2g08510 FvH4_2g08530
malus_domestica	MD05G1068000.v1.1 MD10G1077900.v1.1 MD10G1078000.v1.1
prunus_persica	Prupe.8G098700_v2.0.a1 Prupe.8G098900_v2.0.a1 Prupe.8G099700_v2.0.a1 Prupe.8G099900_v2.0.a1
pyrus_communis	pycom05g05900 pycom10g06110 pycom10g06130 pycom289g00010
rosa_chinensis	RchiOBHm_Chr6g0263891
rosa_laevigata	RLG00000014306
rosa_multiflora	Rmu_sc0002112.1_g000012
rosa_roxburghii	Rroxscaffold_176G00431280 Rroxscaffold_7G00203800
rosa_rugosa	Rorug06G0006700
rosa_samantha	Rh6AG126700 Rh6BG123000 Rh6CG121400 Rh6DG108900
rosa_wichuraiana	Rw6G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	443, 494, 841
AciI	CCGC	1 cut(s)	690
AclWI	GGATC	2 cut(s)	496, 577
AcuI	CTGAAG	1 cut(s)	807
AfiI	CCNNNNNNNGG	2 cut(s)	422, 505
AgsI	TTSAA	3 cut(s)	162, 202, 413
AjnI	CCWGG	4 cut(s)	357, 431, 675, 790
AluBI	AGCT	3 cut(s)	296, 670, 857
AluI	AGCT	3 cut(s)	296, 670, 857
AlwI	GGATC	2 cut(s)	496, 577
AlwNI	CAGNNNCTG	1 cut(s)	438
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	4 cut(s)	606, 716, 719, 756
AspS9I	GGNCC	3 cut(s)	178, 257, 508
AvaII	GGWCC	2 cut(s)	178, 508
BanI	GGYRCC	3 cut(s)	443, 494, 841
BarI	GAAGNNNNNNTAC	2 cut(s)	102, 134
BbvI	GCAGC	4 cut(s)	593, 703, 706, 768
BccI	CCATC	2 cut(s)	425, 853
BciT130I	CCWGG	4 cut(s)	359, 433, 677, 792
BciVI	GTATCC	1 cut(s)	730
BclI	TGATCA	2 cut(s)	136, 142
BfaI	CTAG	3 cut(s)	221, 452, 833
BfmI	CTRYAG	1 cut(s)	548
BfuI	GTATCC	1 cut(s)	730
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	4 cut(s)	607, 717, 720, 757
BlpI	GCTNAGC	1 cut(s)	786
BlsI	GCNGC	4 cut(s)	608, 718, 721, 758
Bme1390I	CCNGG	4 cut(s)	359, 433, 677, 792
Bme18I	GGWCC	2 cut(s)	178, 508
BmgT120I	GGNCC	3 cut(s)	178, 257, 508
BmiI	GGNNCC	5 cut(s)	180, 445, 496, 796, 843
BmrFI	CCNGG	4 cut(s)	359, 433, 677, 792
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	26
BmuI	ACTGGG	1 cut(s)	200
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BpmI	CTGGAG	1 cut(s)	341
Bpu1102I	GCTNAGC	1 cut(s)	786
BpuEI	CTTGAG	1 cut(s)	359
BsaBI	GATNNNNATC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 505
Bse1I	ACTGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	848
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	4 cut(s)	359, 433, 677, 792
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	422, 505
BseMI	GCAATG	1 cut(s)	848
BseMII	CTCAG	3 cut(s)	229, 758, 777
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	4 cut(s)	593, 703, 706, 768
BseYI	CCCAGC	1 cut(s)	685
BshFI	GGCC	1 cut(s)	258
BshNI	GGYRCC	3 cut(s)	443, 494, 841
BslFI	GGGAC	1 cut(s)	764
BslI	CCNNNNNNNGG	2 cut(s)	422, 505
BsmFI	GGGAC	1 cut(s)	764
BsnI	GGCC	1 cut(s)	258
Bsp143I	GATC	6 cut(s)	87, 136, 142, 211, 488, 582
Bsp1720I	GCTNAGC	1 cut(s)	786
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	1 cut(s)	690
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	3 cut(s)	228, 757, 778
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	5 cut(s)	180, 445, 496, 796, 843
BspPI	GGATC	2 cut(s)	496, 577
BspT107I	GGYRCC	3 cut(s)	443, 494, 841
BsrDI	GCAATG	1 cut(s)	848
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	6 cut(s)	87, 136, 142, 211, 488, 582
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	4 cut(s)	359, 433, 677, 792
Bst4CI	ACNGT	1 cut(s)	562
Bst6I	CTCTTC	2 cut(s)	48, 549
BstC8I	GCNNGC	2 cut(s)	29, 855
BstDEI	CTNAG	3 cut(s)	215, 744, 786
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	6 cut(s)	90, 139, 145, 214, 491, 585
BstMBI	GATC	6 cut(s)	87, 136, 142, 211, 488, 582
BstMWI	GCNNNNNNNGC	2 cut(s)	657, 850
BstNI	CCWGG	4 cut(s)	359, 433, 677, 792
BstSCI	CCNGG	4 cut(s)	357, 431, 675, 790
BstSFI	CTRYAG	1 cut(s)	548
BstV1I	GCAGC	4 cut(s)	593, 703, 706, 768
BstX2I	RGATCY	2 cut(s)	211, 582
BstXI	CCANNNNNNTGG	1 cut(s)	779
BstYI	RGATCY	2 cut(s)	211, 582
BsuI	GTATCC	1 cut(s)	730
BsuRI	GGCC	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	407
BtsIMutI	CAGTG	2 cut(s)	407, 752
Cac8I	GCNNGC	2 cut(s)	29, 855
CaiI	CAGNNNCTG	1 cut(s)	438
CciI	TCATGA	1 cut(s)	139
Cfr13I	GGNCC	3 cut(s)	178, 257, 508
CviAII	CATG	8 cut(s)	134, 140, 460, 587, 616, 713, 733, 761
DdeI	CTNAG	3 cut(s)	215, 744, 786
DpnI	GATC	6 cut(s)	89, 138, 144, 213, 490, 584
DpnII	GATC	6 cut(s)	87, 136, 142, 211, 488, 582
Eam1104I	CTCTTC	2 cut(s)	48, 549
EarI	CTCTTC	2 cut(s)	48, 549
Eco130I	CCWWGG	1 cut(s)	459
Eco47I	GGWCC	2 cut(s)	178, 508
Eco57I	CTGAAG	1 cut(s)	807
EcoO109I	RGGNCCY	2 cut(s)	257, 508
EcoRII	CCWGG	4 cut(s)	357, 431, 675, 790
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	8 cut(s)	137, 143, 463, 590, 619, 716, 736, 764
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FaqI	GGGAC	1 cut(s)	764
FatI	CATG	8 cut(s)	133, 139, 459, 586, 615, 712, 732, 760
FauI	CCCGC	1 cut(s)	683
FauNDI	CATATG	1 cut(s)	174
FbaI	TGATCA	2 cut(s)	136, 142
Fnu4HI	GCNGC	4 cut(s)	607, 717, 720, 757
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	4 cut(s)	607, 717, 720, 757
FspBI	CTAG	3 cut(s)	221, 452, 833
GluI	GCNGC	4 cut(s)	607, 717, 720, 757
GsaI	CCCAGC	1 cut(s)	689
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	258
Hin1II	CATG	8 cut(s)	137, 143, 463, 590, 619, 716, 736, 764
HinfI	GANTC	6 cut(s)	169, 299, 362, 428, 455, 709
Hpy188I	TCNGA	1 cut(s)	826
Hpy188III	TCNNGA	3 cut(s)	140, 338, 511
HpyAV	CCTTC	4 cut(s)	270, 335, 344, 831
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4V	TGCA	3 cut(s)	17, 65, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	657, 850
HpyF3I	CTNAG	3 cut(s)	215, 744, 786
Hsp92II	CATG	8 cut(s)	137, 143, 463, 590, 619, 716, 736, 764
Ksp22I	TGATCA	2 cut(s)	136, 142
Kzo9I	GATC	6 cut(s)	87, 136, 142, 211, 488, 582
LmnI	GCTCC	1 cut(s)	595
Lsp1109I	GCAGC	4 cut(s)	593, 703, 706, 768
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	3 cut(s)	221, 452, 833
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	6 cut(s)	89, 138, 144, 213, 490, 584
MboI	GATC	6 cut(s)	87, 136, 142, 211, 488, 582
MboII	GAAGA	8 cut(s)	12, 35, 97, 122, 150, 190, 337, 536
MflI	RGATCY	2 cut(s)	211, 582
MlyI	GAGTC	2 cut(s)	356, 437
MseI	TTAA	1 cut(s)	859
MslI	CAYNNNNRTG	1 cut(s)	138
MspR9I	CCNGG	4 cut(s)	359, 433, 677, 792
MvaI	CCWGG	4 cut(s)	359, 433, 677, 792
MwoI	GCNNNNNNNGC	2 cut(s)	657, 850
NcoI	CCATGG	1 cut(s)	459
NdeI	CATATG	1 cut(s)	174
NdeII	GATC	6 cut(s)	87, 136, 142, 211, 488, 582
NlaIII	CATG	8 cut(s)	137, 143, 463, 590, 619, 716, 736, 764
NlaIV	GGNNCC	5 cut(s)	180, 445, 496, 796, 843
NmuCI	GTSAC	1 cut(s)	404
PagI	TCATGA	1 cut(s)	139
PfeI	GAWTC	4 cut(s)	169, 299, 455, 709
PfoI	TCCNGGA	1 cut(s)	357
PkrI	GCNGC	4 cut(s)	608, 718, 721, 758
PleI	GAGTC	2 cut(s)	356, 436
PpsI	GAGTC	2 cut(s)	356, 436
PpuMI	RGGWCCY	1 cut(s)	508
Psp5II	RGGWCCY	1 cut(s)	508
Psp6I	CCWGG	4 cut(s)	357, 431, 675, 790
PspFI	CCCAGC	1 cut(s)	685
PspGI	CCWGG	4 cut(s)	357, 431, 675, 790
PspN4I	GGNNCC	5 cut(s)	180, 445, 496, 796, 843
PspPI	GGNCC	3 cut(s)	178, 257, 508
PspPPI	RGGWCCY	1 cut(s)	508
PstNI	CAGNNNCTG	1 cut(s)	438
PsuI	RGATCY	2 cut(s)	211, 582
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	859
SatI	GCNGC	4 cut(s)	607, 717, 720, 757
Sau3AI	GATC	6 cut(s)	87, 136, 142, 211, 488, 582
Sau96I	GGNCC	3 cut(s)	178, 257, 508
SchI	GAGTC	2 cut(s)	356, 437
ScrFI	CCNGG	4 cut(s)	359, 433, 677, 792
SfaNI	GCATC	1 cut(s)	26
SfcI	CTRYAG	1 cut(s)	548
SinI	GGWCC	2 cut(s)	178, 508
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SsiI	CCGC	1 cut(s)	690
SspMI	CTAG	3 cut(s)	221, 452, 833
StyD4I	CCNGG	4 cut(s)	357, 431, 675, 790
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	1 cut(s)	562
TaqI	TCGA	1 cut(s)	23
TfiI	GAWTC	4 cut(s)	169, 299, 455, 709
Tru1I	TTAA	1 cut(s)	859
Tru9I	TTAA	1 cut(s)	859
TscAI	CASTG	2 cut(s)	407, 752
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	4 cut(s)	606, 716, 719, 756
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	123, 701
TspGWI	ACGGA	1 cut(s)	714
TspRI	CASTG	2 cut(s)	407, 752
VpaK11BI	GGWCC	2 cut(s)	178, 508
XspI	CTAG	3 cut(s)	221, 452, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.