AT1G50510

Indigoidine synthase A like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007924
Physical Location & Seq
Forward (+)
18716112 .. 18719336
3225 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50510.1

Sequence Viewer

Length: 993 bp
ATGGCTTCTTCTTTAGCTCAATCTAGAATCTCGAATCTCCAGAATCATCTTTCACCTCTTGAAGCAAACAACAAGCTCAGGAGTCTGGTCAAGATTTCTCCCCAAGTATCTGAAGCCTTGTCTAATGGACGTGCTGTTGTCGCTCTTGAGTCAACCATTATCTCCCATGGGATGCCTTACCCTCAAAATCTGCAAACAGCAAAAGAGGTGGAGTCAATTGTGAGAGAAAATGGAGCAATCCCTGCAACAATTGCTATCCTTAATGGAGTACCTTGCATAGGTCTGAGCGAGGAAGAACTAGAACGTCTTGCATCTCTCGGAAAAAGTGTCCAAAAGACAGCGGGAAGGGACATAGCAAATGTTGTGGCTACAAGAGGAAACGGTGCAACTACAGTCTCTGCAACGTTGTTTTTCGCTTCAATGGTTGGCATCCAAGTTTTTGTGACGGGCGGGATAGGTGGTGTCCATAGACATGCCAACCATTCGATGGACATATCATCTGATCTTACTGCACTTGGGAGGACTCCAATAGCAGTGATATCAGCAGGCGTTAAATCAATACTTGATATTCCAAAGACTCTTGAATATTTGGAAACTCAAGAAGTGTATGTTGCTGCATACAAGAGCGATGAGTTTCCAGCATTTTTCACAGAAAAAAGTGGCTGTAAGGCACCTTCCCGTGTAAATAGCCCTGAAGACTGTGCTAGAGTAATAGATGCAAACATGAAGCTAAACCGTCAGGCGGGGATTCTATTTGCCATTCCAATTCCGAAACACCATTCAGCCGCTGGAAATCTTATCGAATCAGCAACACAGCGTGCTCTTACAGAAGCAAGGGAACAAAACGTTACTGGAAATGCAGAAACTCCATTCTTACTTGCACGGGTAAATGAGTTAACCGGAGGCACATCACTTGCAGCAAACATTGCGCTTGTGAAAAACAATGCCCTTATCGGTTCTCAGATTGCAGTAGCCCTTTCTCAGCTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 map00240
Pfam Domains
Protein Families
Indigoidine_A

Protein Analysis

330

Amino Acids

34.8

Weight (kDa)

7.06

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Indigoidine_A PF04227 35 - 325 7.6e-128 Indigoidine synthase A like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 670
AccB7I CCANNNNNTGG 1 cut(s) 487
AciI CCGC 4 cut(s) 341, 450, 743, 786
AclI AACGTT 2 cut(s) 404, 846
AcuI CTGAAG 2 cut(s) 132, 714
AdeI CACNNNGTG 1 cut(s) 818
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 3 cut(s) 278, 487, 742
AgsI TTSAA 3 cut(s) 62, 420, 584
AjiI CACGTC 1 cut(s) 131
AluBI AGCT 4 cut(s) 17, 76, 730, 985
AluI AGCT 4 cut(s) 17, 76, 730, 985
Alw21I GWGCWC 1 cut(s) 823
Alw26I GTCTC 1 cut(s) 400
AlwNI CAGNNNCTG 2 cut(s) 398, 788
ApeKI GCWGC 2 cut(s) 614, 917
AspLEI GCGC 1 cut(s) 931
AsuHPI GGTGA 1 cut(s) 45
BanI GGYRCC 1 cut(s) 670
BarI GAAGNNNNNNTAC 2 cut(s) 658, 690
BbsI GAAGAC 1 cut(s) 702
Bbv12I GWGCWC 1 cut(s) 823
BbvI GCAGC 2 cut(s) 601, 929
BccI CCATC 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 400
BfaI CTAG 3 cut(s) 24, 299, 705
BfmI CTRYAG 1 cut(s) 390
BisI GCNGC 3 cut(s) 615, 786, 918
BlsI GCNGC 3 cut(s) 616, 787, 919
BmgBI CACGTC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 672
BmsI GCATC 4 cut(s) 162, 320, 438, 706
BpiI GAAGAC 1 cut(s) 702
BpmI CTGGAG 1 cut(s) 23
Bpu10I CCTNAGC 1 cut(s) 77
BpuEI CTTGAG 2 cut(s) 167, 582
BsaJI CCNNGG 1 cut(s) 166
BsaWI WCCGGW 1 cut(s) 899
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 487, 742
Bse1I ACTGG 1 cut(s) 856
Bse3DI GCAATG 1 cut(s) 924
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 2 cut(s) 177, 429
BseLI CCNNNNNNNGG 3 cut(s) 278, 487, 742
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 3 cut(s) 91, 275, 974
BseNI ACTGG 1 cut(s) 856
BseXI GCAGC 2 cut(s) 601, 929
BsgI GTGCAG 1 cut(s) 495
BshNI GGYRCC 1 cut(s) 670
BsiHKAI GWGCWC 1 cut(s) 823
BsiSI CCGG 1 cut(s) 900
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 3 cut(s) 278, 487, 742
BsmAI GTCTC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 823
Bsp143I GATC 1 cut(s) 502
Bsp19I CCATGG 1 cut(s) 166
BspACI CCGC 4 cut(s) 341, 450, 743, 786
BspCNI CTCAG 3 cut(s) 90, 276, 973
BspLI GGNNCC 1 cut(s) 672
BspT107I GGYRCC 1 cut(s) 670
BsrDI GCAATG 1 cut(s) 924
BsrI ACTGG 1 cut(s) 856
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 1 cut(s) 502
BssT1I CCWWGG 1 cut(s) 166
Bst4CI ACNGT 4 cut(s) 383, 394, 701, 737
BstAPI GCANNNNNTGC 3 cut(s) 242, 251, 926
BstC8I GCNNGC 2 cut(s) 547, 819
BstDEI CTNAG 4 cut(s) 77, 284, 960, 981
BstDSI CCRYGG 1 cut(s) 166
BstENI CCTNNNNNAGG 1 cut(s) 276
BstF5I GGATG 2 cut(s) 177, 429
BstHHI GCGC 1 cut(s) 931
BstKTI GATC 1 cut(s) 505
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 1 cut(s) 502
BstMWI GCNNNNNNNGC 4 cut(s) 140, 242, 251, 926
BstNSI RCATGY 1 cut(s) 476
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 2 cut(s) 601, 929
BstV2I GAAGAC 1 cut(s) 702
BtgI CCRYGG 1 cut(s) 166
BtgZI GCGATG 1 cut(s) 642
BtrI CACGTC 1 cut(s) 131
BtsCI GGATG 2 cut(s) 177, 429
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 1 cut(s) 540
Cac8I GCNNGC 2 cut(s) 547, 819
CaiI CAGNNNCTG 2 cut(s) 398, 788
CfoI GCGC 1 cut(s) 931
Csp6I GTAC 1 cut(s) 269
CspCI CAANNNNNGTGG 4 cut(s) 189, 224, 345, 380
CviAII CATG 3 cut(s) 167, 473, 724
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 4 cut(s) 77, 284, 960, 981
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
DraIII CACNNNGTG 1 cut(s) 818
Eco130I CCWWGG 1 cut(s) 166
Eco32I GATATC 1 cut(s) 540
Eco57I CTGAAG 2 cut(s) 132, 714
EcoNI CCTNNNNNAGG 1 cut(s) 276
EcoRV GATATC 1 cut(s) 540
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 3 cut(s) 170, 476, 727
FaiI YATR 9 cut(s) 168, 278, 353, 468, 474, 494, 609, 619, 725
FaqI GGGAC 1 cut(s) 362
FatI CATG 3 cut(s) 166, 472, 723
FauI CCCGC 3 cut(s) 334, 443, 736
Fnu4HI GCNGC 3 cut(s) 615, 786, 918
FokI GGATG 2 cut(s) 184, 416
Fsp4HI GCNGC 3 cut(s) 615, 786, 918
FspBI CTAG 3 cut(s) 24, 299, 705
GlaI GCGC 1 cut(s) 930
GluI GCNGC 3 cut(s) 615, 786, 918
GsuI CTGGAG 1 cut(s) 23
HapII CCGG 1 cut(s) 900
HhaI GCGC 1 cut(s) 931
Hin1II CATG 3 cut(s) 170, 476, 727
Hin6I GCGC 1 cut(s) 929
HinP1I GCGC 1 cut(s) 929
HincII GTYRAC 2 cut(s) 153, 897
HindII GTYRAC 2 cut(s) 153, 897
HpaI GTTAAC 1 cut(s) 897
HpaII CCGG 1 cut(s) 900
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 2 cut(s) 153, 897
Hpy188I TCNGA 6 cut(s) 112, 285, 320, 502, 771, 963
Hpy188III TCNNGA 9 cut(s) 24, 31, 40, 59, 79, 91, 146, 581, 599
Hpy8I GTNNAC 2 cut(s) 153, 897
HpyAV CCTTC 2 cut(s) 339, 684
HpyCH4III ACNGT 4 cut(s) 383, 394, 701, 737
HpyCH4IV ACGT 4 cut(s) 130, 304, 404, 846
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 242, 251, 926
HpyF3I CTNAG 4 cut(s) 77, 284, 960, 981
HpySE526I ACGT 4 cut(s) 130, 304, 404, 846
Hsp92II CATG 3 cut(s) 170, 476, 727
HspAI GCGC 1 cut(s) 929
KspAI GTTAAC 1 cut(s) 897
Kzo9I GATC 1 cut(s) 502
LmnI GCTCC 1 cut(s) 233
Lsp1109I GCAGC 2 cut(s) 601, 929
LweI GCATC 4 cut(s) 162, 320, 438, 706
MaeI CTAG 3 cut(s) 24, 299, 705
MaeII ACGT 4 cut(s) 130, 304, 404, 846
MaeIII GTNAC 2 cut(s) 442, 847
MalI GATC 1 cut(s) 504
MboI GATC 1 cut(s) 502
MboII GAAGA 2 cut(s) 305, 707
MfeI CAATTG 2 cut(s) 216, 249
MhlI GDGCHC 1 cut(s) 823
MluCI AATT 3 cut(s) 216, 249, 765
MlyI GAGTC 5 cut(s) 91, 158, 221, 517, 571
MnlI CCTC 7 cut(s) 66, 192, 199, 283, 368, 513, 896
MseI TTAA 3 cut(s) 261, 552, 896
MslI CAYNNNNRTG 1 cut(s) 471
MspA1I CMGCKG 3 cut(s) 341, 788, 985
MspI CCGG 1 cut(s) 900
MunI CAATTG 2 cut(s) 216, 249
MwoI GCNNNNNNNGC 4 cut(s) 140, 242, 251, 926
NcoI CCATGG 1 cut(s) 166
NdeII GATC 1 cut(s) 502
NlaIII CATG 3 cut(s) 170, 476, 727
NlaIV GGNNCC 1 cut(s) 672
NmuCI GTSAC 1 cut(s) 442
NspI RCATGY 1 cut(s) 476
PfeI GAWTC 5 cut(s) 27, 34, 43, 748, 803
PflMI CCANNNNNTGG 1 cut(s) 487
PkrI GCNGC 3 cut(s) 616, 787, 919
PleI GAGTC 5 cut(s) 90, 157, 220, 517, 571
PpsI GAGTC 5 cut(s) 90, 157, 220, 517, 571
Psp1406I AACGTT 2 cut(s) 404, 846
PspN4I GGNNCC 1 cut(s) 672
PstNI CAGNNNCTG 2 cut(s) 398, 788
PvuII CAGCTG 1 cut(s) 985
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 471
SaqAI TTAA 3 cut(s) 261, 552, 896
SatI GCNGC 3 cut(s) 615, 786, 918
Sau3AI GATC 1 cut(s) 502
SchI GAGTC 5 cut(s) 91, 158, 221, 517, 571
SduI GDGCHC 1 cut(s) 823
SfaNI GCATC 4 cut(s) 162, 320, 438, 706
SfcI CTRYAG 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 2 cut(s) 146, 597
SmoI CTYRAG 2 cut(s) 146, 597
Sse9I AATT 3 cut(s) 216, 249, 765
SsiI CCGC 4 cut(s) 341, 450, 743, 786
SspI AATATT 1 cut(s) 587
SspMI CTAG 3 cut(s) 24, 299, 705
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 4 cut(s) 383, 394, 701, 737
TaiI ACGT 4 cut(s) 133, 307, 407, 849
TaqI TCGA 3 cut(s) 32, 485, 801
TasI AATT 3 cut(s) 216, 249, 765
TauI GCSGC 1 cut(s) 788
TfiI GAWTC 5 cut(s) 27, 34, 43, 748, 803
Tru1I TTAA 3 cut(s) 261, 552, 896
Tru9I TTAA 3 cut(s) 261, 552, 896
TscAI CASTG 1 cut(s) 540
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 2 cut(s) 614, 917
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 1 cut(s) 740
TspRI CASTG 1 cut(s) 540
Van91I CCANNNNNTGG 1 cut(s) 487
XagI CCTNNNNNAGG 1 cut(s) 276
XbaI TCTAGA 1 cut(s) 23
XceI RCATGY 1 cut(s) 476
XcmI CCANNNNNNNNNTGG 2 cut(s) 484, 785
XspI CTAG 3 cut(s) 24, 299, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.