Rh5AG336900

Indigoidine synthase A like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0007924
Physical Location & Seq
Forward (+)
54158671 .. 54180429
21759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG336900.1

Sequence Viewer

Length: 873 bp
ATGGCGTCGGCGTCGTCGTCGTCTTCAGCTCTCTCAAGACTGTCCAGTATCAGCAGACACTTCAATCCCTCCCACGCAAACAAGGACGGTGTGGCCTTACTCAAGATTTCTCCAGAGGTTTCCGAAGCTTTGTCAATTGGGCGTGCCGTCGTTGCTCTTGAATCCACCATTATTTCCCATGGGATGCCGTATCCCAAGAATTTGGAGACTGCAAAGGAGGTTGAGGCAATTGTCAGGGAAAATGGGGCTGTTCCTGCCACCATTGCTATCTTGGATGGCACACCTTGCATAGGTCTAACTATAGAAGAACTGGAGAGGCTTGCCAGATTGGGTCCAAGAGCTCAGAAGACAGCTCGAAGAGACATTGCACATGTTGTGGCAACCAGAGGGAACGGTGCAACTACTGTTTCTGCAACCATGATTTTTGCTCATATGGTTGGCATCCCATTGTTTGTAACGGGAGGAATTGGAGGAGTACATCAACATGGCGAGCATACAATGGACATATCTTCTGATCTTACTGAGCTTGGAAGGACACCTGTGGCTGTCATCTCTGCTGGTGTAAAATCAATTTTGGATATCCCAAGGACCCTCGAATATTTGGAAACACAGGGAGTTTGTGTAGCTGCTTACAAGACCAATGAATTTCCAGCATTTTTCACAGAAGCAAGTGGCTGCAAGGTGCCTTGCCGTGTAGATACCCCAGATGATTGCGCTCGGCTTATAGATGCAAACCTTAAACTTGAGCTTGGAACTGGAATGTTGATTGCTGTTCCAATTCCTAAAGAACACTCGGCTTCTGGAAATTTAATTGAGTCTGCAATACAGACAGCTCTTAGAGAAGCTAGGTGGACTTGTTCTGCCTGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 map00240
Pfam Domains
Protein Families
Indigoidine_A

Protein Analysis

290

Amino Acids

30.53

Weight (kDa)

6.14

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Indigoidine_A PF04227 39 - 283 2.6e-111 Indigoidine synthase A like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 682
AcsI RAATTY 3 cut(s) 199, 644, 805
AcuI CTGAAG 1 cut(s) 9
AcyI GRCGYC 2 cut(s) 5, 11
AfaI GTAC 1 cut(s) 477
AfiI CCNNNNNNNGG 1 cut(s) 290
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 2 cut(s) 64, 161
AluBI AGCT 9 cut(s) 29, 128, 341, 353, 526, 626, 748, 833, 845
AluI AGCT 9 cut(s) 29, 128, 341, 353, 526, 626, 748, 833, 845
Alw21I GWGCWC 1 cut(s) 343
Alw26I GTCTC 2 cut(s) 200, 354
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 626, 675
ApoI RAATTY 3 cut(s) 199, 644, 805
AspLEI GCGC 1 cut(s) 716
AspS9I GGNCC 2 cut(s) 332, 588
AvaII GGWCC 2 cut(s) 332, 588
BanI GGYRCC 1 cut(s) 682
BanII GRGCYC 1 cut(s) 343
BbsI GAAGAC 2 cut(s) 15, 353
Bbv12I GWGCWC 1 cut(s) 343
BbvI GCAGC 2 cut(s) 613, 662
BccI CCATC 1 cut(s) 269
BceAI ACGGC 3 cut(s) 131, 172, 675
BciVI GTATCC 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 200, 354
BfaI CTAG 1 cut(s) 846
BfmI CTRYAG 1 cut(s) 300
BfuI GTATCC 1 cut(s) 201
BisI GCNGC 2 cut(s) 627, 676
BlsI GCNGC 2 cut(s) 628, 677
Bme18I GGWCC 2 cut(s) 332, 588
BmgT120I GGNCC 2 cut(s) 332, 588
BmiI GGNNCC 3 cut(s) 333, 590, 684
BmsI GCATC 3 cut(s) 174, 450, 718
BpiI GAAGAC 2 cut(s) 15, 353
BpmI CTGGAG 2 cut(s) 96, 332
BpuEI CTTGAG 3 cut(s) 19, 86, 764
BsaHI GRCGYC 2 cut(s) 5, 11
BsaJI CCNNGG 2 cut(s) 178, 584
BsaXI ACNNNNNCTCC 2 cut(s) 606, 636
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 3 cut(s) 45, 315, 760
Bse3DI GCAATG 2 cut(s) 261, 363
BseDI CCNNGG 2 cut(s) 178, 584
BseGI GGATG 3 cut(s) 189, 280, 441
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMI GCAATG 2 cut(s) 261, 363
BseMII CTCAG 2 cut(s) 356, 513
BseNI ACTGG 3 cut(s) 45, 315, 760
BseRI GAGGAG 1 cut(s) 486
BseXI GCAGC 2 cut(s) 613, 662
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 682
BsiHKAI GWGCWC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 2 cut(s) 200, 354
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 1 cut(s) 514
Bsp19I CCATGG 1 cut(s) 178
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 2 cut(s) 355, 514
BspLI GGNNCC 3 cut(s) 333, 590, 684
BspT107I GGYRCC 1 cut(s) 682
BsrDI GCAATG 2 cut(s) 261, 363
BsrI ACTGG 3 cut(s) 45, 315, 760
BssECI CCNNGG 2 cut(s) 178, 584
BssMI GATC 1 cut(s) 514
BssNI GRCGYC 2 cut(s) 5, 11
BssT1I CCWWGG 2 cut(s) 178, 584
Bst4CI ACNGT 4 cut(s) 42, 89, 395, 406
Bst6I CTCTTC 1 cut(s) 352
BstACI GRCGYC 2 cut(s) 5, 11
BstAPI GCANNNNNTGC 1 cut(s) 285
BstC8I GCNNGC 3 cut(s) 144, 321, 491
BstDEI CTNAG 3 cut(s) 342, 522, 836
BstDSI CCRYGG 1 cut(s) 178
BstENI CCTNNNNNAGG 1 cut(s) 288
BstF5I GGATG 3 cut(s) 189, 280, 441
BstHHI GCGC 1 cut(s) 716
BstKTI GATC 1 cut(s) 517
BstMAI GTCTC 2 cut(s) 200, 354
BstMBI GATC 1 cut(s) 514
BstMWI GCNNNNNNNGC 4 cut(s) 152, 254, 263, 285
BstNSI RCATGY 1 cut(s) 374
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 2 cut(s) 613, 662
BstV2I GAAGAC 2 cut(s) 15, 353
BstXI CCANNNNNNTGG 1 cut(s) 202
BsuI GTATCC 1 cut(s) 201
BsuRI GGCC 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 178
BtsCI GGATG 3 cut(s) 189, 280, 441
Cac8I GCNNGC 3 cut(s) 144, 321, 491
CfoI GCGC 1 cut(s) 716
Cfr13I GGNCC 2 cut(s) 332, 588
Csp6I GTAC 1 cut(s) 476
CviAII CATG 4 cut(s) 179, 371, 418, 485
CviQI GTAC 1 cut(s) 476
DdeI CTNAG 3 cut(s) 342, 522, 836
DpnI GATC 1 cut(s) 516
DpnII GATC 1 cut(s) 514
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Ecl136II GAGCTC 1 cut(s) 341
Eco130I CCWWGG 2 cut(s) 178, 584
Eco24I GRGCYC 1 cut(s) 343
Eco32I GATATC 1 cut(s) 580
Eco47I GGWCC 2 cut(s) 332, 588
Eco53kI GAGCTC 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 9
EcoICRI GAGCTC 1 cut(s) 341
EcoNI CCTNNNNNAGG 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 588
EcoRV GATATC 1 cut(s) 580
EcoT14I CCWWGG 2 cut(s) 178, 584
EcoT38I GRGCYC 1 cut(s) 343
ErhI CCWWGG 2 cut(s) 178, 584
FaeI CATG 4 cut(s) 182, 374, 421, 488
FatI CATG 4 cut(s) 178, 370, 417, 484
FauNDI CATATG 1 cut(s) 432
Fnu4HI GCNGC 2 cut(s) 627, 676
FokI GGATG 3 cut(s) 196, 287, 428
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 2 cut(s) 627, 676
FspBI CTAG 1 cut(s) 846
GlaI GCGC 1 cut(s) 715
GluI GCNGC 2 cut(s) 627, 676
GsuI CTGGAG 2 cut(s) 96, 332
HaeIII GGCC 1 cut(s) 95
HhaI GCGC 1 cut(s) 716
Hin1I GRCGYC 2 cut(s) 5, 11
Hin1II CATG 4 cut(s) 182, 374, 421, 488
Hin6I GCGC 1 cut(s) 714
HinP1I GCGC 1 cut(s) 714
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 2 cut(s) 161, 815
Hpy166II GTNNAC 1 cut(s) 852
Hpy188I TCNGA 3 cut(s) 124, 345, 514
Hpy188III TCNNGA 5 cut(s) 36, 103, 113, 158, 801
Hpy8I GTNNAC 1 cut(s) 852
Hpy99I CGWCG 5 cut(s) 10, 16, 19, 22, 152
HpyAV CCTTC 1 cut(s) 525
HpyCH4III ACNGT 4 cut(s) 42, 89, 395, 406
HpyCH4V TGCA 9 cut(s) 212, 288, 368, 398, 413, 678, 731, 821, 869
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 254, 263, 285
HpyF3I CTNAG 3 cut(s) 342, 522, 836
Hsp92I GRCGYC 2 cut(s) 5, 11
Hsp92II CATG 4 cut(s) 182, 374, 421, 488
HspAI GCGC 1 cut(s) 714
Kzo9I GATC 1 cut(s) 514
Lsp1109I GCAGC 2 cut(s) 613, 662
LweI GCATC 3 cut(s) 174, 450, 718
MaeI CTAG 1 cut(s) 846
MaeIII GTNAC 1 cut(s) 454
MalI GATC 1 cut(s) 516
MboI GATC 1 cut(s) 514
MboII GAAGA 5 cut(s) 15, 317, 358, 369, 501
MfeI CAATTG 2 cut(s) 135, 228
MhlI GDGCHC 1 cut(s) 343
MluCI AATT 9 cut(s) 135, 199, 228, 465, 570, 644, 777, 805, 810
MlyI GAGTC 1 cut(s) 824
MnlI CCTC 9 cut(s) 79, 109, 211, 217, 309, 380, 455, 464, 602
MseI TTAA 2 cut(s) 738, 809
MslI CAYNNNNRTG 1 cut(s) 483
MunI CAATTG 2 cut(s) 135, 228
MwoI GCNNNNNNNGC 4 cut(s) 152, 254, 263, 285
NcoI CCATGG 1 cut(s) 178
NdeI CATATG 1 cut(s) 432
NdeII GATC 1 cut(s) 514
NlaIII CATG 4 cut(s) 182, 374, 421, 488
NlaIV GGNNCC 3 cut(s) 333, 590, 684
NmeAIII GCCGAG 2 cut(s) 697, 773
NspI RCATGY 1 cut(s) 374
PciI ACATGT 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 2 cut(s) 628, 677
PleI GAGTC 1 cut(s) 823
PpsI GAGTC 1 cut(s) 823
PpuMI RGGWCCY 1 cut(s) 588
PscI ACATGT 1 cut(s) 370
Psp124BI GAGCTC 1 cut(s) 343
Psp5II RGGWCCY 1 cut(s) 588
PspN4I GGNNCC 3 cut(s) 333, 590, 684
PspPI GGNCC 2 cut(s) 332, 588
PspPPI RGGWCCY 1 cut(s) 588
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
RseI CAYNNNNRTG 1 cut(s) 483
SacI GAGCTC 1 cut(s) 343
SaqAI TTAA 2 cut(s) 738, 809
SatI GCNGC 2 cut(s) 627, 676
Sau3AI GATC 1 cut(s) 514
Sau96I GGNCC 2 cut(s) 332, 588
SchI GAGTC 1 cut(s) 824
SduI GDGCHC 1 cut(s) 343
SfaNI GCATC 3 cut(s) 174, 450, 718
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 2 cut(s) 332, 588
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 3 cut(s) 34, 101, 743
SmoI CTYRAG 3 cut(s) 34, 101, 743
Sse9I AATT 9 cut(s) 135, 199, 228, 465, 570, 644, 777, 805, 810
SspI AATATT 1 cut(s) 599
SspMI CTAG 1 cut(s) 846
SstI GAGCTC 1 cut(s) 343
StyI CCWWGG 2 cut(s) 178, 584
TaaI ACNGT 4 cut(s) 42, 89, 395, 406
TaqI TCGA 2 cut(s) 355, 594
TasI AATT 9 cut(s) 135, 199, 228, 465, 570, 644, 777, 805, 810
TatI WGTACW 1 cut(s) 475
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 2 cut(s) 738, 809
Tru9I TTAA 2 cut(s) 738, 809
TseI GCWGC 2 cut(s) 626, 675
TspDTI ATGAA 1 cut(s) 657
VpaK11BI GGWCC 2 cut(s) 332, 588
XagI CCTNNNNNAGG 1 cut(s) 288
XapI RAATTY 3 cut(s) 199, 644, 805
XceI RCATGY 1 cut(s) 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XspI CTAG 1 cut(s) 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.