Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007924

Physical Location & Seq

Genomic Coordinates Forward (+)

17954132 .. 17960309

Gene Structure 6178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g16360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCGTCGTCCTCTTCTTCTTCATCAGCTGCTTTCTCAAGACTCTCTAATCTCCGTAAACACCTCCATCCCTCGCATTTCGACAAGGGTGGCGTCGGATCAATCAAGATTTCTCCAGAGGTTTCTGACGCTTTGTCCAATGGCCATGCTGTTGTCGCTCTTGAATCCACCATTATTTCCCATGGGATGCCTTATCCTAAGAACTTGGAAACAGCAAAGGAGGTTGAGGCAGTTGTGAGGGACAATGGAGCTGTTCCTGCCACTGTTGCCATTTTGGATGGCGTACCTTGCATAGGTCTGAGTATGGAAGAATTGGAGAAGCTTGCCAATCTGGGTCATAAAGCTCAGAAGACAGCTCGAAGGGATATTGCACATGTTGTGGCAACCAGAGGGAATGGAGCAACTACTGTTTCTGCAACCATGTTTTTTGCTTCCATGGTTGGCATCCCATTGTTTGTTACTGGAGGAATTGGAGGAGTACATAGGCATGGCGAGCATACAATGGACATATCTTCTGATCTTACTGAGCTTGGAAGGACACCAGTAGCTGTCATCTCTGCTGGTGTAAAATCGATATTGGATATCCCAAGGACCCTTGAATATTTGGAGACTCAGGGAGTTTGCGTTGCTGCTTATAGGACCAACGAATTTCCAGCATTTTTTACAGAAACGAGTGGTTGTAAGGTGCCTTGCCGTGTAGATACCCCAGAAGACTGTGCTCAGCTTATAGATGCAAATCTGAAACTTGAGCTTGGAGGTGGGATTTTGATTGCTGTTCCAATTCCTAAAGAGCACTCAGCTTCTGGAAGTTTAATTGAGTCTGCAATACAGAGAGCCCTTGACGAAGCTAGGGATAAGAACATAATAGGAAATGATGCAACTCCATTCTTGCTCAAGAGAGTGAATGAGCTAACAGGAGGAGCTTCATTGGCTTCGAACATTGCACTGGTGAAGAACAATGCACTTGTTGGAGCTAAAGTTGCTGTAGCACTTGCGAAGACTAGAGAACGCAAAAATAAAGGTAGCAAGGTGGTGCAGAGTCGGCGTTATAGGGCTCAAAATGTTTTCAACGGGATCTGGAAACCGATCATTATGACCAATGGAAGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 map00240

Pfam Domains

Protein Families

Indigoidine_A

Protein Analysis

371

Amino Acids

39.08

Weight (kDa)

8.83

Isoelectric Point (pI)

27.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50510
fragaria_vesca	FvH4_3g28170 FvH4_3g28170
malus_domestica	MD11G1196200.v1.1
prunus_persica	Prupe.4G258300_v2.0.a1 Prupe.4G258300_v2.0.a1 Prupe.4G258300_v2.0.a1
pyrus_communis	pycom11g16360
rosa_chinensis	RchiOBHm_Chr5g0050911
rosa_laevigata	RLG00000034743
rosa_multiflora	Rmu_sc0040613.1_g000001 Rmu_ssc0000397.1_g000002 Rmu_ssc0000397.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029820 Rroxscaffold_3G00229240 Rroxscaffold_4G00318990 Rroxscaffold_4G00319000
rosa_rugosa	Rorug05G0265000.1 Rorug05G0265100.1
rosa_samantha	Rh5AG336900 Rh5BG346400 Rh5CG374100 Rh5DG359400
rosa_wichuraiana	Rw5G031760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	685
AclWI	GGATC	2 cut(s)	106, 1082
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	647
AcyI	GRCGYC	2 cut(s)	5, 93
AfaI	GTAC	2 cut(s)	285, 480
AfiI	CCNNNNNNNGG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	373
AgsI	TTSAA	3 cut(s)	164, 599, 1069
AhdI	GACNNNNNGTC	1 cut(s)	133
Alw21I	GWGCWC	2 cut(s)	721, 795
Alw26I	GTCTC	1 cut(s)	602
AlwI	GGATC	2 cut(s)	106, 1082
AlwNI	CAGNNNCTG	2 cut(s)	548, 803
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	3 cut(s)	29, 629, 1107
ApoI	RAATTY	1 cut(s)	647
AspS9I	GGNCC	2 cut(s)	591, 639
AsuHPI	GGTGA	1 cut(s)	961
AsuII	TTCGAA	1 cut(s)	935
AvaII	GGWCC	2 cut(s)	591, 639
BalI	TGGCCA	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	685
BanII	GRGCYC	2 cut(s)	838, 1057
BbsI	GAAGAC	3 cut(s)	356, 717, 1004
Bbv12I	GWGCWC	2 cut(s)	721, 795
BbvI	GCAGC	3 cut(s)	16, 616, 1094
BccI	CCATC	2 cut(s)	75, 272
BceAI	ACGGC	1 cut(s)	678
BcoDI	GTCTC	1 cut(s)	602
BfaI	CTAG	2 cut(s)	849, 1002
BfmI	CTRYAG	1 cut(s)	984
BisI	GCNGC	3 cut(s)	30, 630, 1108
BlpI	GCTNAGC	1 cut(s)	720
BlsI	GCNGC	3 cut(s)	31, 631, 1109
Bme18I	GGWCC	2 cut(s)	591, 639
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	591, 639
BmiI	GGNNCC	2 cut(s)	593, 687
BmsI	GCATC	4 cut(s)	177, 453, 721, 865
BpiI	GAAGAC	3 cut(s)	356, 717, 1004
BpmI	CTGGAG	2 cut(s)	99, 483
Bpu1102I	GCTNAGC	1 cut(s)	720
Bpu14I	TTCGAA	1 cut(s)	935
BpuEI	CTTGAG	3 cut(s)	22, 767, 878
Bsa29I	ATCGAT	1 cut(s)	572
BsaBI	GATNNNNATC	1 cut(s)	735
BsaHI	GRCGYC	2 cut(s)	5, 93
BsaJI	CCNNGG	3 cut(s)	181, 435, 587
BsaXI	ACNNNNNCTCC	4 cut(s)	609, 639, 963, 993
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	3 cut(s)	466, 542, 951
Bse3DI	GCAATG	1 cut(s)	939
Bse8I	GATNNNNATC	1 cut(s)	735
BseCI	ATCGAT	1 cut(s)	572
BseDI	CCNNGG	3 cut(s)	181, 435, 587
BseGI	GGATG	4 cut(s)	67, 192, 283, 444
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMI	GCAATG	1 cut(s)	939
BseMII	CTCAG	6 cut(s)	290, 359, 516, 626, 734, 810
BseNI	ACTGG	3 cut(s)	466, 542, 951
BseRI	GAGGAG	2 cut(s)	489, 933
BseXI	GCAGC	3 cut(s)	16, 616, 1094
BsgI	GTGCAG	1 cut(s)	1055
BshFI	GGCC	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	685
BshVI	ATCGAT	1 cut(s)	572
BsiHKAI	GWGCWC	2 cut(s)	721, 795
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	602
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	144
Bsp119I	TTCGAA	1 cut(s)	935
Bsp1286I	GDGCHC	4 cut(s)	721, 795, 838, 1057
Bsp143I	GATC	4 cut(s)	98, 517, 1074, 1086
Bsp1720I	GCTNAGC	1 cut(s)	720
Bsp19I	CCATGG	2 cut(s)	181, 435
BspANI	GGCC	1 cut(s)	144
BspCNI	CTCAG	6 cut(s)	291, 358, 517, 625, 733, 809
BspDI	ATCGAT	1 cut(s)	572
BspLI	GGNNCC	2 cut(s)	593, 687
BspPI	GGATC	2 cut(s)	106, 1082
BspT104I	TTCGAA	1 cut(s)	935
BspT107I	GGYRCC	1 cut(s)	685
BsrDI	GCAATG	1 cut(s)	939
BsrI	ACTGG	3 cut(s)	466, 542, 951
BssECI	CCNNGG	3 cut(s)	181, 435, 587
BssMI	GATC	4 cut(s)	98, 517, 1074, 1086
BssNI	GRCGYC	2 cut(s)	5, 93
BssT1I	CCWWGG	3 cut(s)	181, 435, 587
Bst4CI	ACNGT	3 cut(s)	265, 409, 716
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	2 cut(s)	5, 93
BstBI	TTCGAA	1 cut(s)	935
BstC8I	GCNNGC	2 cut(s)	324, 494
BstDEI	CTNAG	7 cut(s)	198, 299, 345, 525, 612, 720, 796
BstDSI	CCRYGG	2 cut(s)	181, 435
BstENI	CCTNNNNNAGG	1 cut(s)	291
BstF5I	GGATG	4 cut(s)	67, 192, 283, 444
BstKTI	GATC	4 cut(s)	101, 520, 1077, 1089
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	4 cut(s)	98, 517, 1074, 1086
BstMWI	GCNNNNNNNGC	8 cut(s)	155, 257, 266, 288, 493, 929, 980, 1042
BstNSI	RCATGY	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	984
BstV1I	GCAGC	3 cut(s)	16, 616, 1094
BstV2I	GAAGAC	3 cut(s)	356, 717, 1004
BstX2I	RGATCY	1 cut(s)	1074
BstYI	RGATCY	1 cut(s)	1074
Bsu15I	ATCGAT	1 cut(s)	572
BsuRI	GGCC	1 cut(s)	144
BsuTUI	ATCGAT	1 cut(s)	572
BtgI	CCRYGG	2 cut(s)	181, 435
BtsCI	GGATG	4 cut(s)	67, 192, 283, 444
BtsIMutI	CAGTG	2 cut(s)	261, 944
Cac8I	GCNNGC	2 cut(s)	324, 494
CaiI	CAGNNNCTG	2 cut(s)	548, 803
Cfr13I	GGNCC	2 cut(s)	591, 639
ClaI	ATCGAT	1 cut(s)	572
CseI	GACGC	2 cut(s)	82, 137
Csp6I	GTAC	2 cut(s)	284, 479
CviAII	CATG	6 cut(s)	146, 182, 374, 421, 436, 488
CviQI	GTAC	2 cut(s)	284, 479
DdeI	CTNAG	7 cut(s)	198, 299, 345, 525, 612, 720, 796
DpnI	GATC	4 cut(s)	100, 519, 1076, 1088
DpnII	GATC	4 cut(s)	98, 517, 1074, 1086
DriI	GACNNNNNGTC	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	19
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	19
Eco130I	CCWWGG	3 cut(s)	181, 435, 587
Eco24I	GRGCYC	2 cut(s)	838, 1057
Eco32I	GATATC	1 cut(s)	583
Eco47I	GGWCC	2 cut(s)	591, 639
EcoNI	CCTNNNNNAGG	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	591
EcoRV	GATATC	1 cut(s)	583
EcoT14I	CCWWGG	3 cut(s)	181, 435, 587
EcoT38I	GRGCYC	2 cut(s)	838, 1057
ErhI	CCWWGG	3 cut(s)	181, 435, 587
FaeI	CATG	6 cut(s)	149, 185, 377, 424, 439, 491
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	6 cut(s)	145, 181, 373, 420, 435, 487
Fnu4HI	GCNGC	3 cut(s)	30, 630, 1108
FokI	GGATG	4 cut(s)	54, 199, 290, 431
FriOI	GRGCYC	2 cut(s)	838, 1057
Fsp4HI	GCNGC	3 cut(s)	30, 630, 1108
FspBI	CTAG	2 cut(s)	849, 1002
GluI	GCNGC	3 cut(s)	30, 630, 1108
GsuI	CTGGAG	2 cut(s)	99, 483
HaeIII	GGCC	1 cut(s)	144
HgaI	GACGC	2 cut(s)	82, 137
Hin1I	GRCGYC	2 cut(s)	5, 93
Hin1II	CATG	6 cut(s)	149, 185, 377, 424, 439, 491
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	5 cut(s)	42, 164, 610, 818, 1039
HphI	GGTGA	1 cut(s)	961
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	6 cut(s)	98, 127, 300, 348, 517, 741
Hpy188III	TCNNGA	7 cut(s)	39, 106, 116, 161, 804, 895, 1078
Hpy8I	GTNNAC	1 cut(s)	59
Hpy99I	CGWCG	2 cut(s)	10, 98
HpyAV	CCTTC	2 cut(s)	354, 528
HpyCH4III	ACNGT	3 cut(s)	265, 409, 716
HpyCH4V	TGCA	9 cut(s)	291, 371, 416, 734, 824, 878, 944, 962, 1036
HpyF10VI	GCNNNNNNNGC	8 cut(s)	155, 257, 266, 288, 493, 929, 980, 1042
HpyF3I	CTNAG	7 cut(s)	198, 299, 345, 525, 612, 720, 796
Hsp92I	GRCGYC	2 cut(s)	5, 93
Hsp92II	CATG	6 cut(s)	149, 185, 377, 424, 439, 491
Kzo9I	GATC	4 cut(s)	98, 517, 1074, 1086
LmnI	GCTCC	4 cut(s)	248, 398, 920, 971
Lsp1109I	GCAGC	3 cut(s)	16, 616, 1094
LweI	GCATC	4 cut(s)	177, 453, 721, 865
MaeI	CTAG	2 cut(s)	849, 1002
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	4 cut(s)	100, 519, 1076, 1088
MboI	GATC	4 cut(s)	98, 517, 1074, 1086
MboII	GAAGA	9 cut(s)	6, 9, 12, 320, 361, 504, 722, 964, 1009
MflI	RGATCY	1 cut(s)	1074
MhlI	GDGCHC	4 cut(s)	721, 795, 838, 1057
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	5 cut(s)	311, 468, 647, 780, 813
MluNI	TGGCCA	1 cut(s)	144
MlyI	GAGTC	4 cut(s)	36, 604, 827, 1048
MmeI	TCCRAC	2 cut(s)	76, 949
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	1 cut(s)	812
MslI	CAYNNNNRTG	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	29
MwoI	GCNNNNNNNGC	8 cut(s)	155, 257, 266, 288, 493, 929, 980, 1042
NcoI	CCATGG	2 cut(s)	181, 435
NdeII	GATC	4 cut(s)	98, 517, 1074, 1086
NlaIII	CATG	6 cut(s)	149, 185, 377, 424, 439, 491
NlaIV	GGNNCC	2 cut(s)	593, 687
NspI	RCATGY	1 cut(s)	377
NspV	TTCGAA	1 cut(s)	935
PciI	ACATGT	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	31, 631, 1109
PleI	GAGTC	4 cut(s)	36, 604, 826, 1047
PpsI	GAGTC	4 cut(s)	36, 604, 826, 1047
PpuMI	RGGWCCY	1 cut(s)	591
PscI	ACATGT	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	591
PspN4I	GGNNCC	2 cut(s)	593, 687
PspPI	GGNCC	2 cut(s)	591, 639
PspPPI	RGGWCCY	1 cut(s)	591
PstNI	CAGNNNCTG	2 cut(s)	548, 803
PsuI	RGATCY	1 cut(s)	1074
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	2 cut(s)	285, 480
RsaNI	GTAC	2 cut(s)	284, 479
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	812
SatI	GCNGC	3 cut(s)	30, 630, 1108
Sau3AI	GATC	4 cut(s)	98, 517, 1074, 1086
Sau96I	GGNCC	2 cut(s)	591, 639
SchI	GAGTC	4 cut(s)	36, 604, 827, 1048
SduI	GDGCHC	4 cut(s)	721, 795, 838, 1057
SfaNI	GCATC	4 cut(s)	177, 453, 721, 865
SfcI	CTRYAG	1 cut(s)	984
SfuI	TTCGAA	1 cut(s)	935
SinI	GGWCC	2 cut(s)	591, 639
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	3 cut(s)	37, 746, 893
SmoI	CTYRAG	3 cut(s)	37, 746, 893
Sse9I	AATT	5 cut(s)	311, 468, 647, 780, 813
SspI	AATATT	1 cut(s)	602
SspMI	CTAG	2 cut(s)	849, 1002
StyI	CCWWGG	3 cut(s)	181, 435, 587
TaaI	ACNGT	3 cut(s)	265, 409, 716
TaqI	TCGA	4 cut(s)	81, 358, 572, 935
TasI	AATT	5 cut(s)	311, 468, 647, 780, 813
TatI	WGTACW	1 cut(s)	478
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	812
Tru9I	TTAA	1 cut(s)	812
TscAI	CASTG	2 cut(s)	268, 951
TseI	GCWGC	3 cut(s)	29, 629, 1107
TspDTI	ATGAA	2 cut(s)	12, 915
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	2 cut(s)	268, 951
VpaK11BI	GGWCC	2 cut(s)	591, 639
XagI	CCTNNNNNAGG	1 cut(s)	291
XapI	RAATTY	1 cut(s)	647
XceI	RCATGY	1 cut(s)	377
XspI	CTAG	2 cut(s)	849, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.