RLG00000034743

Indigoidine synthase A like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0007924
Physical Location & Seq
Forward (+)
53413456 .. 53420481
7026 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034743

Sequence Viewer

Length: 1017 bp
ATGGCGTCTTCAGCTCTCTCAAGACTGTCCAGTATCAGCAGACACTTCAATCCCTCCCACGCAAACAAGGACGGTGTGGCCTTAATCAAGATTTCTCCGGAGGTTTCTGAAGCTTTGTCAAATGGGCGTGCCGTCGTTGCTCTTGAATCCACCATTATTTCCCATGGGATGCCGTATCCCAAGAATTTGGAGACTGCAAAGGAGGTTGAGGCAATTGTGAGGGAAAATGGGGCTGTTCCTGCCACCATTGCTATCTTGGATGGCACACCTTGCATAGGTCTAACTATAGAAGAACTGGAGAGGCTTGCCAGATTGGGTCCAAGAGCTCAGAAGACAGCTCGAAGAGACATTGCACATGTTGTGGCAACCAGAGGGAATGGTGCAACTACTGTTTCTGCAACCATGATTTTTGCTCATATGGTTGGCATCCCATTGTTTGTAACAGGAGGAATTGGAGGAGTACATCAACATGGCGAGCATACAATGGACATATCTTCTGATCTCACTGAGCTTGGAAGGACACCTGTAGCTGTCATCTCTGCTGGCGTAAAATCAATTTTGGATATCCCAAGGACCCTCGAATATTTGGAAACACAGGGAGTTTGTGTAGCTGCTTACAAGACCAATGAATTTCCAGCATTTTTCACGGAAGCAAGTGGCTGCAAGGTGCCTTGCCGTGTAGATACTCCAGATGATTGCGCTCGGCTTATAGATGCAAACCTTAAACTTGAGCTTGGAACTGGAATGTTGATTGCTGTTCCAATTCCTAAAGAACACTCGGCTTCTGGAAATTTAATTGAGTCTGCAATACAGACAGCTCTTAGAGAAGCTAGGGATAAGAACATAACAGGCAATGCTGCTACTCCATTCTTGCTTGCAAGAGTAAATGAACTAACTGGAGGAGCATCTTTGGCTTCGAACATTGCCCTGGTGAAGAATAATGCACTTGTTGGTTCTAAAATTGCTGTAGCACTTTCCCAGATCAGAGAATGTTGTAGAAAAGGTGGTTTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 map00240
Pfam Domains
Protein Families
Indigoidine_A

Protein Analysis

339

Amino Acids

35.53

Weight (kDa)

6.76

Isoelectric Point (pI)

24.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Indigoidine_A PF04227 34 - 324 3.8e-132 Indigoidine synthase A like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 667
AccIII TCCGGA 1 cut(s) 97
AcsI RAATTY 3 cut(s) 184, 629, 790
AcuI CTGAAG 1 cut(s) 129
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 462
AfiI CCNNNNNNNGG 1 cut(s) 275
AflIII ACRYGT 1 cut(s) 355
AgsI TTSAA 2 cut(s) 49, 146
AjnI CCWGG 1 cut(s) 927
Alw21I GWGCWC 1 cut(s) 328
Alw26I GTCTC 2 cut(s) 185, 339
Aor13HI TCCGGA 1 cut(s) 97
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 3 cut(s) 611, 660, 857
ApoI RAATTY 3 cut(s) 184, 629, 790
AspLEI GCGC 1 cut(s) 701
AspS9I GGNCC 2 cut(s) 317, 573
AsuHPI GGTGA 1 cut(s) 943
AsuII TTCGAA 1 cut(s) 917
AvaII GGWCC 2 cut(s) 317, 573
BanI GGYRCC 1 cut(s) 667
BanII GRGCYC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 3 cut(s) 598, 647, 844
BccI CCATC 1 cut(s) 254
BceAI ACGGC 3 cut(s) 116, 157, 660
BciT130I CCWGG 1 cut(s) 929
BciVI GTATCC 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 185, 339
BfaI CTAG 1 cut(s) 831
BfmI CTRYAG 3 cut(s) 285, 525, 966
BfuI GTATCC 1 cut(s) 186
BisI GCNGC 3 cut(s) 612, 661, 858
BlsI GCNGC 3 cut(s) 613, 662, 859
Bme1390I CCNGG 1 cut(s) 929
Bme18I GGWCC 2 cut(s) 317, 573
BmgT120I GGNCC 2 cut(s) 317, 573
BmiI GGNNCC 3 cut(s) 318, 575, 669
BmrFI CCNGG 1 cut(s) 929
BmsI GCATC 4 cut(s) 159, 435, 703, 914
BpiI GAAGAC 1 cut(s) 338
BpmI CTGGAG 3 cut(s) 317, 672, 918
Bpu14I TTCGAA 1 cut(s) 917
BpuEI CTTGAG 2 cut(s) 4, 749
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 163, 569, 927
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 4 cut(s) 30, 300, 745, 901
Bse3DI GCAATG 4 cut(s) 246, 348, 859, 921
BseAI TCCGGA 1 cut(s) 97
BseBI CCWGG 1 cut(s) 929
BseDI CCNNGG 3 cut(s) 163, 569, 927
BseGI GGATG 3 cut(s) 174, 265, 426
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMI GCAATG 4 cut(s) 246, 348, 859, 921
BseMII CTCAG 2 cut(s) 341, 498
BseNI ACTGG 4 cut(s) 30, 300, 745, 901
BseRI GAGGAG 2 cut(s) 471, 915
BseXI GCAGC 3 cut(s) 598, 647, 844
BshFI GGCC 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 667
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 2 cut(s) 185, 339
BsnI GGCC 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 917
Bsp1286I GDGCHC 1 cut(s) 328
Bsp13I TCCGGA 1 cut(s) 97
Bsp143I GATC 2 cut(s) 499, 981
Bsp19I CCATGG 1 cut(s) 163
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 2 cut(s) 340, 499
BspEI TCCGGA 1 cut(s) 97
BspLI GGNNCC 3 cut(s) 318, 575, 669
BspT104I TTCGAA 1 cut(s) 917
BspT107I GGYRCC 1 cut(s) 667
BsrDI GCAATG 4 cut(s) 246, 348, 859, 921
BsrI ACTGG 4 cut(s) 30, 300, 745, 901
BssECI CCNNGG 3 cut(s) 163, 569, 927
BssMI GATC 2 cut(s) 499, 981
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 163, 569
Bst2UI CCWGG 1 cut(s) 929
Bst4CI ACNGT 3 cut(s) 27, 74, 391
Bst6I CTCTTC 1 cut(s) 337
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 270
BstBI TTCGAA 1 cut(s) 917
BstC8I GCNNGC 5 cut(s) 129, 306, 476, 544, 876
BstDEI CTNAG 3 cut(s) 327, 507, 821
BstDSI CCRYGG 1 cut(s) 163
BstENI CCTNNNNNAGG 1 cut(s) 273
BstF5I GGATG 3 cut(s) 174, 265, 426
BstHHI GCGC 1 cut(s) 701
BstKTI GATC 2 cut(s) 502, 984
BstMAI GTCTC 2 cut(s) 185, 339
BstMBI GATC 2 cut(s) 499, 981
BstMWI GCNNNNNNNGC 6 cut(s) 11, 137, 239, 248, 270, 911
BstNI CCWGG 1 cut(s) 929
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 1 cut(s) 927
BstSFI CTRYAG 3 cut(s) 285, 525, 966
BstV1I GCAGC 3 cut(s) 598, 647, 844
BstV2I GAAGAC 1 cut(s) 338
BstXI CCANNNNNNTGG 1 cut(s) 187
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 3 cut(s) 174, 265, 426
BtsIMutI CAGTG 1 cut(s) 504
Cac8I GCNNGC 5 cut(s) 129, 306, 476, 544, 876
CfoI GCGC 1 cut(s) 701
Cfr13I GGNCC 2 cut(s) 317, 573
Csp6I GTAC 1 cut(s) 461
CviAII CATG 4 cut(s) 164, 356, 403, 470
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 3 cut(s) 327, 507, 821
DpnI GATC 2 cut(s) 501, 983
DpnII GATC 2 cut(s) 499, 981
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
Ecl136II GAGCTC 1 cut(s) 326
Eco130I CCWWGG 2 cut(s) 163, 569
Eco24I GRGCYC 1 cut(s) 328
Eco32I GATATC 1 cut(s) 565
Eco47I GGWCC 2 cut(s) 317, 573
Eco53kI GAGCTC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 326
EcoNI CCTNNNNNAGG 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 573
EcoRII CCWGG 1 cut(s) 927
EcoRV GATATC 1 cut(s) 565
EcoT14I CCWWGG 2 cut(s) 163, 569
EcoT38I GRGCYC 1 cut(s) 328
ErhI CCWWGG 2 cut(s) 163, 569
FaeI CATG 4 cut(s) 167, 359, 406, 473
FatI CATG 4 cut(s) 163, 355, 402, 469
FauNDI CATATG 1 cut(s) 417
Fnu4HI GCNGC 3 cut(s) 612, 661, 858
FokI GGATG 3 cut(s) 181, 272, 413
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 3 cut(s) 612, 661, 858
FspBI CTAG 1 cut(s) 831
GlaI GCGC 1 cut(s) 700
GluI GCNGC 3 cut(s) 612, 661, 858
GsuI CTGGAG 3 cut(s) 317, 672, 918
HaeIII GGCC 1 cut(s) 80
HapII CCGG 1 cut(s) 98
HhaI GCGC 1 cut(s) 701
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 167, 359, 406, 473
Hin6I GCGC 1 cut(s) 699
HinP1I GCGC 1 cut(s) 699
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 2 cut(s) 146, 800
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 943
Hpy188I TCNGA 4 cut(s) 109, 330, 499, 986
Hpy188III TCNNGA 6 cut(s) 21, 88, 98, 143, 689, 786
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 510
HpyCH4III ACNGT 3 cut(s) 27, 74, 391
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 137, 239, 248, 270, 911
HpyF3I CTNAG 3 cut(s) 327, 507, 821
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 167, 359, 406, 473
HspAI GCGC 1 cut(s) 699
Kpn2I TCCGGA 1 cut(s) 97
Kzo9I GATC 2 cut(s) 499, 981
LmnI GCTCC 1 cut(s) 902
Lsp1109I GCAGC 3 cut(s) 598, 647, 844
LweI GCATC 4 cut(s) 159, 435, 703, 914
MaeI CTAG 1 cut(s) 831
MaeIII GTNAC 1 cut(s) 439
MalI GATC 2 cut(s) 501, 983
MboI GATC 2 cut(s) 499, 981
MboII GAAGA 5 cut(s) 302, 343, 354, 486, 946
MfeI CAATTG 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 9 cut(s) 184, 213, 450, 555, 629, 762, 790, 795, 960
MlyI GAGTC 1 cut(s) 809
MroI TCCGGA 1 cut(s) 97
MseI TTAA 3 cut(s) 83, 723, 794
MslI CAYNNNNRTG 1 cut(s) 468
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 929
MunI CAATTG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 929
MwoI GCNNNNNNNGC 6 cut(s) 11, 137, 239, 248, 270, 911
NcoI CCATGG 1 cut(s) 163
NdeI CATATG 1 cut(s) 417
NdeII GATC 2 cut(s) 499, 981
NlaIII CATG 4 cut(s) 167, 359, 406, 473
NlaIV GGNNCC 3 cut(s) 318, 575, 669
NmeAIII GCCGAG 2 cut(s) 682, 758
NspI RCATGY 1 cut(s) 359
NspV TTCGAA 1 cut(s) 917
PciI ACATGT 1 cut(s) 355
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 3 cut(s) 613, 662, 859
PleI GAGTC 1 cut(s) 808
PpsI GAGTC 1 cut(s) 808
PpuMI RGGWCCY 1 cut(s) 573
PscI ACATGT 1 cut(s) 355
Psp124BI GAGCTC 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 927
PspGI CCWGG 1 cut(s) 927
PspN4I GGNNCC 3 cut(s) 318, 575, 669
PspPI GGNCC 2 cut(s) 317, 573
PspPPI RGGWCCY 1 cut(s) 573
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
RseI CAYNNNNRTG 1 cut(s) 468
SacI GAGCTC 1 cut(s) 328
SaqAI TTAA 3 cut(s) 83, 723, 794
SatI GCNGC 3 cut(s) 612, 661, 858
Sau3AI GATC 2 cut(s) 499, 981
Sau96I GGNCC 2 cut(s) 317, 573
SchI GAGTC 1 cut(s) 809
ScrFI CCNGG 1 cut(s) 929
SduI GDGCHC 1 cut(s) 328
SfaNI GCATC 4 cut(s) 159, 435, 703, 914
SfcI CTRYAG 3 cut(s) 285, 525, 966
SfuI TTCGAA 1 cut(s) 917
SinI GGWCC 2 cut(s) 317, 573
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 2 cut(s) 19, 728
SmoI CTYRAG 2 cut(s) 19, 728
Sse9I AATT 9 cut(s) 184, 213, 450, 555, 629, 762, 790, 795, 960
SspI AATATT 1 cut(s) 584
SspMI CTAG 1 cut(s) 831
SstI GAGCTC 1 cut(s) 328
StyD4I CCNGG 1 cut(s) 927
StyI CCWWGG 2 cut(s) 163, 569
TaaI ACNGT 3 cut(s) 27, 74, 391
TaqI TCGA 3 cut(s) 340, 579, 917
TasI AATT 9 cut(s) 184, 213, 450, 555, 629, 762, 790, 795, 960
TatI WGTACW 1 cut(s) 460
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 3 cut(s) 83, 723, 794
Tru9I TTAA 3 cut(s) 83, 723, 794
TscAI CASTG 1 cut(s) 511
TseI GCWGC 3 cut(s) 611, 660, 857
TspDTI ATGAA 2 cut(s) 642, 903
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 1 cut(s) 511
VpaK11BI GGWCC 2 cut(s) 317, 573
XagI CCTNNNNNAGG 1 cut(s) 273
XapI RAATTY 3 cut(s) 184, 629, 790
XceI RCATGY 1 cut(s) 359
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XspI CTAG 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.