Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007924

Physical Location & Seq

Genomic Coordinates Reverse (-)

18369144 .. 18376596

Gene Structure 7453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G258300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCGTCGTCTTCTTCGGCTCTCTCAAGACTCTCTAATCTCCGCGGACACTTACATCCTTCGCACTCAAATAAGGGTGGTGTGGGGTTTATCAAGATTTCTCCAGAGGTTTCTGAAGCTTTGTCAAATGGCCATGCTGTTGTTGCTCTTGAATCCACCATTATTTCCCATGGGATGCCCTATCCTAAGAACTTGGAAACCGCAAGGGAAGTTGAGGCAGTTGTGAGGGAAAATGGAGCTGTTCCTGCCACGATTGCTATTTTGGATGGCATACCTTGCGTAGGTCTGAGTATGGAAGAACTGGAGAAGCTTGCCAATCTCGGACCCAAAGCTCAGAAGACAGCTCGAAGAGACATTGCACATGTTGTGGCAACCGGAGGGAATGGAGCAACTACTGTTTCTGCAACCATGTTTTTTGCTTCTATGGTTGGCATACCATTGTTTGTTACTGGAGGGATTGGAGGAGTACATAGACATGGAGAGCATACAATGGACATATCTTCTGATCTTACTGAGCTTGGAAGGACACCAGTAGCTGTCATCTCTGCTGGTGTAAAATCAATATTGGATGTCCCAAGGACCCTTGAATATTTGGAAACTCAGGGAGTTTGTGTTGCTGCTTATAGGACCAATGAATTTCCAGCATTTTTCTCTGAAACAAGTGGTTGCAAGGTGCCTTGCCGTATAGATACCCCAGAAGACTGTGCTCAGCTTATAGATGCGAACCTGAAACTTGAGCTTGGAACTGGAATTTTGATTGCTGTTCCAATTCCCAAAGAGCACGCAGCGTCTGGAAGGTTAATTGAGTCTGCAATAAAGAGAGCTCTTGAAGAAGCTAGGGATAAGAATATAATTGGAAATGCTGCAACTCCATTTTTGCTTGCGAGAGTGAATGAATTAACTGGAGGAGCTTCTCTGGCTTCGAACATTGCACTGGTGAAGAACAATGCACTTGTTGGTGCTAAAATTTCCGTAGCACTTGCACAGATTAAAGAACGTGAAAATAAAGGTGGTGTGAAGACGACGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 map00240

Pfam Domains

Protein Families

Indigoidine_A

Protein Analysis

344

Amino Acids

35.85

Weight (kDa)

6.8

Isoelectric Point (pI)

26.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50510
fragaria_vesca	FvH4_3g28170 FvH4_3g28170
malus_domestica	MD11G1196200.v1.1
prunus_persica	Prupe.4G258300_v2.0.a1 Prupe.4G258300_v2.0.a1 Prupe.4G258300_v2.0.a1
pyrus_communis	pycom11g16360
rosa_chinensis	RchiOBHm_Chr5g0050911
rosa_laevigata	RLG00000034743
rosa_multiflora	Rmu_sc0040613.1_g000001 Rmu_ssc0000397.1_g000002 Rmu_ssc0000397.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029820 Rroxscaffold_3G00229240 Rroxscaffold_4G00318990 Rroxscaffold_4G00319000
rosa_rugosa	Rorug05G0265000.1 Rorug05G0265100.1
rosa_samantha	Rh5AG336900 Rh5BG346400 Rh5CG374100 Rh5DG359400
rosa_wichuraiana	Rw5G031760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	673
AccII	CGCG	1 cut(s)	45
AciI	CCGC	3 cut(s)	43, 45, 201
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	3 cut(s)	635, 750, 966
AcuI	CTGAAG	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	468
AfiI	CCNNNNNNNGG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	3 cut(s)	152, 587, 830
Alw21I	GWGCWC	3 cut(s)	709, 783, 826
Alw26I	GTCTC	1 cut(s)	345
AlwNI	CAGNNNCTG	2 cut(s)	536, 791
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	3 cut(s)	617, 785, 863
ApoI	RAATTY	3 cut(s)	635, 750, 966
AspS9I	GGNCC	3 cut(s)	323, 579, 627
AsuHPI	GGTGA	1 cut(s)	949
AsuII	TTCGAA	1 cut(s)	923
AvaII	GGWCC	3 cut(s)	323, 579, 627
BalI	TGGCCA	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	673
BanII	GRGCYC	1 cut(s)	826
BbsI	GAAGAC	4 cut(s)	3, 344, 705, 1025
Bbv12I	GWGCWC	3 cut(s)	709, 783, 826
BbvI	GCAGC	3 cut(s)	604, 797, 850
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	666
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	1 cut(s)	837
BfmI	CTRYAG	1 cut(s)	1028
BisI	GCNGC	3 cut(s)	618, 786, 864
BlpI	GCTNAGC	1 cut(s)	708
BlsI	GCNGC	3 cut(s)	619, 787, 865
Bme18I	GGWCC	3 cut(s)	323, 579, 627
BmgT120I	GGNCC	3 cut(s)	323, 579, 627
BmiI	GGNNCC	3 cut(s)	325, 581, 675
BmsI	GCATC	2 cut(s)	165, 709
BpiI	GAAGAC	4 cut(s)	3, 344, 705, 1025
BpmI	CTGGAG	4 cut(s)	87, 323, 471, 924
Bpu1102I	GCTNAGC	1 cut(s)	708
Bpu14I	TTCGAA	1 cut(s)	923
BpuEI	CTTGAG	2 cut(s)	10, 755
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	43, 169, 575
BsaWI	WCCGGW	1 cut(s)	374
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	6 cut(s)	306, 454, 530, 751, 907, 939
Bse3DI	GCAATG	2 cut(s)	354, 927
BseDI	CCNNGG	3 cut(s)	43, 169, 575
BseGI	GGATG	4 cut(s)	55, 180, 271, 574
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	2 cut(s)	354, 927
BseMII	CTCAG	5 cut(s)	278, 347, 504, 614, 722
BseNI	ACTGG	6 cut(s)	306, 454, 530, 751, 907, 939
BseRI	GAGGAG	2 cut(s)	477, 921
BseXI	GCAGC	3 cut(s)	604, 797, 850
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	673
BsiHKAI	GWGCWC	3 cut(s)	709, 783, 826
BsiSI	CCGG	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	557
BsnI	GGCC	1 cut(s)	132
Bsp119I	TTCGAA	1 cut(s)	923
Bsp1286I	GDGCHC	3 cut(s)	709, 783, 826
Bsp143I	GATC	1 cut(s)	505
Bsp1720I	GCTNAGC	1 cut(s)	708
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	3 cut(s)	43, 45, 201
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	5 cut(s)	279, 346, 505, 613, 721
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	3 cut(s)	325, 581, 675
BspT104I	TTCGAA	1 cut(s)	923
BspT107I	GGYRCC	1 cut(s)	673
BsrDI	GCAATG	2 cut(s)	354, 927
BsrI	ACTGG	6 cut(s)	306, 454, 530, 751, 907, 939
BssECI	CCNNGG	3 cut(s)	43, 169, 575
BssMI	GATC	1 cut(s)	505
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	169, 575
Bst4CI	ACNGT	2 cut(s)	397, 704
Bst6I	CTCTTC	1 cut(s)	343
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstBI	TTCGAA	1 cut(s)	923
BstC8I	GCNNGC	3 cut(s)	312, 783, 882
BstDEI	CTNAG	6 cut(s)	186, 287, 333, 513, 600, 708
BstDSI	CCRYGG	2 cut(s)	43, 169
BstENI	CCTNNNNNAGG	1 cut(s)	279
BstF5I	GGATG	4 cut(s)	55, 180, 271, 574
BstFNI	CGCG	1 cut(s)	45
BstKTI	GATC	1 cut(s)	508
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 245, 254, 276, 917
BstNSI	RCATGY	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	1028
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	604, 797, 850
BstV2I	GAAGAC	4 cut(s)	3, 344, 705, 1025
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	2 cut(s)	43, 169
BtsCI	GGATG	4 cut(s)	55, 180, 271, 574
BtsIMutI	CAGTG	1 cut(s)	932
Cac8I	GCNNGC	3 cut(s)	312, 783, 882
CaiI	CAGNNNCTG	2 cut(s)	536, 791
Cfr13I	GGNCC	3 cut(s)	323, 579, 627
Cfr42I	CCGCGG	1 cut(s)	46
CseI	GACGC	1 cut(s)	777
Csp6I	GTAC	1 cut(s)	467
CviAII	CATG	5 cut(s)	134, 170, 362, 409, 476
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	6 cut(s)	186, 287, 333, 513, 600, 708
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
Ecl136II	GAGCTC	1 cut(s)	824
Eco130I	CCWWGG	2 cut(s)	169, 575
Eco24I	GRGCYC	1 cut(s)	826
Eco47I	GGWCC	3 cut(s)	323, 579, 627
Eco53kI	GAGCTC	1 cut(s)	824
Eco57I	CTGAAG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	824
EcoNI	CCTNNNNNAGG	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	579
EcoT14I	CCWWGG	2 cut(s)	169, 575
EcoT38I	GRGCYC	1 cut(s)	826
ErhI	CCWWGG	2 cut(s)	169, 575
FaeI	CATG	5 cut(s)	137, 173, 365, 412, 479
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	5 cut(s)	133, 169, 361, 408, 475
Fnu4HI	GCNGC	3 cut(s)	618, 786, 864
FokI	GGATG	4 cut(s)	42, 187, 278, 581
FriOI	GRGCYC	1 cut(s)	826
Fsp4HI	GCNGC	3 cut(s)	618, 786, 864
FspBI	CTAG	1 cut(s)	837
GluI	GCNGC	3 cut(s)	618, 786, 864
GsuI	CTGGAG	4 cut(s)	87, 323, 471, 924
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	375
HgaI	GACGC	1 cut(s)	777
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	137, 173, 365, 412, 479
HindIII	AAGCTT	2 cut(s)	117, 308
HinfI	GANTC	3 cut(s)	30, 152, 806
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	1 cut(s)	949
Hpy188I	TCNGA	6 cut(s)	115, 288, 323, 336, 505, 655
Hpy188III	TCNNGA	6 cut(s)	27, 94, 104, 149, 792, 827
Hpy99I	CGWCG	2 cut(s)	10, 1027
HpyAV	CCTTC	3 cut(s)	69, 516, 789
HpyCH4III	ACNGT	2 cut(s)	397, 704
HpyCH4IV	ACGT	1 cut(s)	997
HpyCH4V	TGCA	8 cut(s)	359, 404, 669, 812, 866, 932, 950, 983
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 245, 254, 276, 917
HpyF3I	CTNAG	6 cut(s)	186, 287, 333, 513, 600, 708
HpySE526I	ACGT	1 cut(s)	997
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	137, 173, 365, 412, 479
KspI	CCGCGG	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	505
LmnI	GCTCC	3 cut(s)	236, 386, 908
Lsp1109I	GCAGC	3 cut(s)	604, 797, 850
LweI	GCATC	2 cut(s)	165, 709
MaeI	CTAG	1 cut(s)	837
MaeII	ACGT	1 cut(s)	997
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	1 cut(s)	507
MboI	GATC	1 cut(s)	505
MhlI	GDGCHC	3 cut(s)	709, 783, 826
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	7 cut(s)	635, 750, 768, 801, 852, 896, 966
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	2 cut(s)	24, 815
MnlI	CCTC	7 cut(s)	100, 208, 219, 371, 446, 455, 899
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	3 cut(s)	800, 899, 990
MslI	CAYNNNNRTG	1 cut(s)	474
Msp20I	TGGCCA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	1 cut(s)	375
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	5 cut(s)	143, 245, 254, 276, 917
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	1 cut(s)	505
NlaIII	CATG	5 cut(s)	137, 173, 365, 412, 479
NlaIV	GGNNCC	3 cut(s)	325, 581, 675
NspI	RCATGY	1 cut(s)	365
NspV	TTCGAA	1 cut(s)	923
PciI	ACATGT	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	152
PkrI	GCNGC	3 cut(s)	619, 787, 865
PleI	GAGTC	2 cut(s)	24, 814
PpsI	GAGTC	2 cut(s)	24, 814
PpuMI	RGGWCCY	1 cut(s)	579
PscI	ACATGT	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	826
Psp5II	RGGWCCY	1 cut(s)	579
PspN4I	GGNNCC	3 cut(s)	325, 581, 675
PspPI	GGNCC	3 cut(s)	323, 579, 627
PspPPI	RGGWCCY	1 cut(s)	579
PstNI	CAGNNNCTG	2 cut(s)	536, 791
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
RseI	CAYNNNNRTG	1 cut(s)	474
SacI	GAGCTC	1 cut(s)	826
SacII	CCGCGG	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	800, 899, 990
SatI	GCNGC	3 cut(s)	618, 786, 864
Sau3AI	GATC	1 cut(s)	505
Sau96I	GGNCC	3 cut(s)	323, 579, 627
SchI	GAGTC	2 cut(s)	24, 815
SduI	GDGCHC	3 cut(s)	709, 783, 826
SfaNI	GCATC	2 cut(s)	165, 709
SfcI	CTRYAG	1 cut(s)	1028
Sfr303I	CCGCGG	1 cut(s)	46
SfuI	TTCGAA	1 cut(s)	923
SgrBI	CCGCGG	1 cut(s)	46
SinI	GGWCC	3 cut(s)	323, 579, 627
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	2 cut(s)	25, 734
SmoI	CTYRAG	2 cut(s)	25, 734
Sse9I	AATT	7 cut(s)	635, 750, 768, 801, 852, 896, 966
SsiI	CCGC	3 cut(s)	43, 45, 201
SspI	AATATT	2 cut(s)	564, 590
SspMI	CTAG	1 cut(s)	837
SstI	GAGCTC	1 cut(s)	826
StyI	CCWWGG	2 cut(s)	169, 575
TaaI	ACNGT	2 cut(s)	397, 704
TaiI	ACGT	1 cut(s)	1000
TaqI	TCGA	2 cut(s)	346, 923
TasI	AATT	7 cut(s)	635, 750, 768, 801, 852, 896, 966
TatI	WGTACW	1 cut(s)	466
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	3 cut(s)	800, 899, 990
Tru9I	TTAA	3 cut(s)	800, 899, 990
TscAI	CASTG	1 cut(s)	939
TseI	GCWGC	3 cut(s)	617, 785, 863
TspDTI	ATGAA	2 cut(s)	648, 909
TspGWI	ACGGA	1 cut(s)	961
TspRI	CASTG	1 cut(s)	939
VpaK11BI	GGWCC	3 cut(s)	323, 579, 627
XagI	CCTNNNNNAGG	1 cut(s)	279
XapI	RAATTY	3 cut(s)	635, 750, 966
XceI	RCATGY	1 cut(s)	365
XspI	CTAG	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.