Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000397.1

Orthogroup ID

OG0007924

Physical Location & Seq

Genomic Coordinates Reverse (-)

19516 .. 25490

Gene Structure 5975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000397.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgtctgagatggcagagctaaaattctcacttccagcacctctagcattccaaaaaagaattttaaacattaaaaaagtgggaaggagagggtacacaccccagcttagacatcaaccttaccctccccatcatgaggaggggggcagaccaaaaatagctgaaattcctttgtctaagacatcagaacctatgaagcacggatacgccattttggcttcgtatcccgtaccgatccgggatacggctgtcatctctgctggtgtaaaatcaattttggatatcccaaggaccctcgaatatttggaaacacagggagtttgtgtagctgcttacaagaccaatgaatttccagcatttttcacagaagcaagtggctgcaaggtgccttgccgtatagataccccagatgattgcgctcggcttatagatgcaaaccttaaacttgagcttggaactggaatgttgattgctgttccaattcctaaagaacactcggcttctggaaatttaattgagtctgcaatacagactgctctcagagaagctagggataagaacataacaggcaatgctgctactccattcttgcttgcaagagtaaatgaactaactggaggagcatctttggcttcgaacattgccctggtgaagaataatgcacttgttggttctaaaattgctgtagcactttcccggatcagagaatgttgtagaaaaggtggtttggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 map00240

Pfam Domains

Protein Families

Indigoidine_A

Protein Analysis

244

Amino Acids

26.38

Weight (kDa)

9.12

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50510
fragaria_vesca	FvH4_3g28170 FvH4_3g28170
malus_domestica	MD11G1196200.v1.1
prunus_persica	Prupe.4G258300_v2.0.a1 Prupe.4G258300_v2.0.a1 Prupe.4G258300_v2.0.a1
pyrus_communis	pycom11g16360
rosa_chinensis	RchiOBHm_Chr5g0050911
rosa_laevigata	RLG00000034743
rosa_multiflora	Rmu_sc0040613.1_g000001 Rmu_ssc0000397.1_g000002 Rmu_ssc0000397.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029820 Rroxscaffold_3G00229240 Rroxscaffold_4G00318990 Rroxscaffold_4G00319000
rosa_rugosa	Rorug05G0265000.1 Rorug05G0265100.1
rosa_samantha	Rh5AG336900 Rh5BG346400 Rh5CG374100 Rh5DG359400
rosa_wichuraiana	Rw5G031760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	385
AclWI	GGATC	2 cut(s)	229, 707
AcsI	RAATTY	5 cut(s)	23, 60, 165, 347, 508
AfaI	GTAC	2 cut(s)	95, 231
AfiI	CCNNNNNNNGG	2 cut(s)	136, 244
AjnI	CCWGG	1 cut(s)	645
AluBI	AGCT	6 cut(s)	19, 106, 161, 329, 451, 548
AluI	AGCT	6 cut(s)	19, 106, 161, 329, 451, 548
AlwI	GGATC	2 cut(s)	229, 707
ApeKI	GCWGC	3 cut(s)	329, 378, 575
ApoI	RAATTY	5 cut(s)	23, 60, 165, 347, 508
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	291
AsuC2I	CCSGG	2 cut(s)	239, 697
AsuHPI	GGTGA	1 cut(s)	661
AsuII	TTCGAA	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	291
BaeI	ACNNNNGTAYC	2 cut(s)	234, 267
BanI	GGYRCC	1 cut(s)	385
BarI	GAAGNNNNNNTAC	2 cut(s)	188, 220
BbvI	GCAGC	3 cut(s)	316, 365, 562
BccI	CCATC	2 cut(s)	4, 138
BceAI	ACGGC	2 cut(s)	261, 378
BciT130I	CCWGG	1 cut(s)	647
BciVI	GTATCC	3 cut(s)	197, 234, 235
BcnI	CCSGG	2 cut(s)	239, 697
BfaI	CTAG	2 cut(s)	44, 549
BfmI	CTRYAG	1 cut(s)	684
BfuI	GTATCC	3 cut(s)	197, 234, 235
BglI	GCCNNNNNGGC	1 cut(s)	215
BisI	GCNGC	3 cut(s)	330, 379, 576
BlsI	GCNGC	3 cut(s)	331, 380, 577
Bme1390I	CCNGG	3 cut(s)	239, 647, 697
Bme18I	GGWCC	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	2 cut(s)	293, 387
BmrFI	CCNGG	3 cut(s)	239, 647, 697
BmsI	GCATC	2 cut(s)	421, 632
BpmI	CTGGAG	1 cut(s)	636
Bpu14I	TTCGAA	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	467
BpuMI	CCSGG	2 cut(s)	239, 697
BsaJI	CCNNGG	2 cut(s)	287, 645
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 244
Bse1I	ACTGG	2 cut(s)	463, 619
Bse3DI	GCAATG	2 cut(s)	577, 639
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	2 cut(s)	287, 645
BseLI	CCNNNNNNNGG	2 cut(s)	136, 244
BseMI	GCAATG	2 cut(s)	577, 639
BseMII	CTCAG	1 cut(s)	553
BseNI	ACTGG	2 cut(s)	463, 619
BseRI	GAGGAG	2 cut(s)	152, 633
BseXI	GCAGC	3 cut(s)	316, 365, 562
BseYI	CCCAGC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	385
BsiSI	CCGG	2 cut(s)	238, 697
BslI	CCNNNNNNNGG	2 cut(s)	136, 244
BsmI	GAATGC	1 cut(s)	47
Bsp119I	TTCGAA	1 cut(s)	635
Bsp143I	GATC	2 cut(s)	234, 699
BspCNI	CTCAG	1 cut(s)	552
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	293, 387
BspPI	GGATC	2 cut(s)	229, 707
BspT104I	TTCGAA	1 cut(s)	635
BspT107I	GGYRCC	1 cut(s)	385
BsrDI	GCAATG	2 cut(s)	577, 639
BsrI	ACTGG	2 cut(s)	463, 619
BssECI	CCNNGG	2 cut(s)	287, 645
BssMI	GATC	2 cut(s)	234, 699
BssT1I	CCWWGG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	647
BstBI	TTCGAA	1 cut(s)	635
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	4 cut(s)	6, 107, 177, 539
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	2 cut(s)	237, 702
BstMBI	GATC	2 cut(s)	234, 699
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 215, 629
BstNI	CCWGG	1 cut(s)	647
BstSCI	CCNGG	3 cut(s)	237, 645, 695
BstSFI	CTRYAG	1 cut(s)	684
BstV1I	GCAGC	3 cut(s)	316, 365, 562
BsuI	GTATCC	3 cut(s)	197, 234, 235
Cac8I	GCNNGC	1 cut(s)	594
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	94, 230
CviAII	CATG	1 cut(s)	134
CviQI	GTAC	2 cut(s)	94, 230
DdeI	CTNAG	4 cut(s)	6, 107, 177, 539
DpnI	GATC	2 cut(s)	236, 701
DpnII	GATC	2 cut(s)	234, 699
DraI	TTTAAA	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	287
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	645
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	1 cut(s)	137
FaiI	YATR	5 cut(s)	135, 194, 398, 428, 563
FatI	CATG	1 cut(s)	133
Fnu4HI	GCNGC	3 cut(s)	330, 379, 576
Fsp4HI	GCNGC	3 cut(s)	330, 379, 576
FspBI	CTAG	2 cut(s)	44, 549
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	3 cut(s)	330, 379, 576
GsaI	CCCAGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	636
HapII	CCGG	2 cut(s)	238, 697
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HinfI	GANTC	1 cut(s)	518
HpaII	CCGG	2 cut(s)	238, 697
HphI	GGTGA	1 cut(s)	661
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	4 cut(s)	7, 187, 542, 704
Hpy188III	TCNNGA	2 cut(s)	134, 504
Hpy8I	GTNNAC	1 cut(s)	96
HpyAV	CCTTC	1 cut(s)	78
HpyCH4V	TGCA	5 cut(s)	381, 434, 524, 596, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 215, 629
HpyF3I	CTNAG	4 cut(s)	6, 107, 177, 539
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	234, 699
LmnI	GCTCC	1 cut(s)	620
Lsp1109I	GCAGC	3 cut(s)	316, 365, 562
LweI	GCATC	2 cut(s)	421, 632
MaeI	CTAG	2 cut(s)	44, 549
MalI	GATC	2 cut(s)	236, 701
MboI	GATC	2 cut(s)	234, 699
MboII	GAAGA	1 cut(s)	664
MluCI	AATT	9 cut(s)	23, 60, 165, 273, 347, 480, 508, 513, 678
MlyI	GAGTC	1 cut(s)	527
MnlI	CCTC	7 cut(s)	51, 83, 130, 133, 135, 305, 611
MseI	TTAA	4 cut(s)	65, 72, 441, 512
MspI	CCGG	2 cut(s)	238, 697
MspR9I	CCNGG	3 cut(s)	239, 647, 697
Mva1269I	GAATGC	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	647
MwoI	GCNNNNNNNGC	3 cut(s)	44, 215, 629
NciI	CCSGG	2 cut(s)	239, 697
NdeII	GATC	2 cut(s)	234, 699
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	2 cut(s)	293, 387
NmeAIII	GCCGAG	2 cut(s)	400, 476
NspV	TTCGAA	1 cut(s)	635
PagI	TCATGA	1 cut(s)	133
PctI	GAATGC	1 cut(s)	47
PfoI	TCCNGGA	2 cut(s)	237, 695
PkrI	GCNGC	3 cut(s)	331, 380, 577
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
PpuMI	RGGWCCY	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	645
PspFI	CCCAGC	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	2 cut(s)	293, 387
PspPI	GGNCC	1 cut(s)	291
PspPPI	RGGWCCY	1 cut(s)	291
RsaI	GTAC	2 cut(s)	95, 231
RsaNI	GTAC	2 cut(s)	94, 230
SaqAI	TTAA	4 cut(s)	65, 72, 441, 512
SatI	GCNGC	3 cut(s)	330, 379, 576
Sau3AI	GATC	2 cut(s)	234, 699
Sau96I	GGNCC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	3 cut(s)	239, 647, 697
SfaNI	GCATC	2 cut(s)	421, 632
SfcI	CTRYAG	1 cut(s)	684
SfuI	TTCGAA	1 cut(s)	635
SinI	GGWCC	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	9 cut(s)	23, 60, 165, 273, 347, 480, 508, 513, 678
SspI	AATATT	1 cut(s)	302
SspMI	CTAG	2 cut(s)	44, 549
StyD4I	CCNGG	3 cut(s)	237, 645, 695
StyI	CCWWGG	1 cut(s)	287
TaqI	TCGA	2 cut(s)	297, 635
TasI	AATT	9 cut(s)	23, 60, 165, 273, 347, 480, 508, 513, 678
Tru1I	TTAA	4 cut(s)	65, 72, 441, 512
Tru9I	TTAA	4 cut(s)	65, 72, 441, 512
TseI	GCWGC	3 cut(s)	329, 378, 575
TspDTI	ATGAA	3 cut(s)	209, 360, 621
TspGWI	ACGGA	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	291
XapI	RAATTY	5 cut(s)	23, 60, 165, 347, 508
XspI	CTAG	2 cut(s)	44, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.