AT1G50610
NAC Family

Probably inactive leucine-rich repeat receptor-like protein kinase At1g50610

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
18742027 .. 18744805
2779 bp
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UTR
Exon/CDS
Intron
AT1G50610.1

Sequence Viewer

Length: 2061 bp
ATGCGCAATTGGGAGGACCCGTTTACGCTTGCGTGTAACACGGCCTTGAAGAAGAATCTACCTTCTTGCATTTTCATCATCATCTTTATCAGCGTGTTATGTCCGGTGGCAATGTCTCAGGTGGTTGTGCCGGATTCAGATGCAGATTGTCTCTTGCGATTCAAAGATACATTAGCAAATGGTTCAGAATTTCGTAGTTGGGATCCATTATCATCACCATGTCAAGGAAATACAGCAAATTGGTTTGGTGTTCTTTGTAGCAATTACGTTTGGGGATTACAACTTGAGGGAATGGGTTTGACCGGGAAACTAAACCTCGACCCATTGGTTCCAATGAAGAATCTGCGAACCATAAGCTTCATGAACAATAACTTCAATGGCCCAATGCCTCAAGTTAAGAGGTTTACTTCGCTGAAATCTTTGTATTTGTCTAATAACCGGTTTTCGGGGGAGATACCCGCAGATGCATTTCTAGGTATGCCACTTTTGAAGAAAATTTTGCTGGCTAATAACGCATTCCGAGGAACAATTCCTTCTTCTCTAGCCTCTTTGCCAATGCTTTTAGAGTTGAGGCTAAATGGTAATCAATTTCAAGGGCAAATACCATCTTTTCAACAGAAGGATCTTAAATTAGCTAGCTTTGAAAACAATGATCTCGATGGACCGATACCTGAAAGTCTTCGAAACATGGATCCAGGCTCTTTTGCAGGTAACAAAGGTTTGTGTGATGCTCCCTTAAGTCCATGTTCCTCTTCCTCTCCGGGGGTTCCTGTTGTTCCGGTATCTCCCGTTGATCCAAAATCTACTTCTCCTCCCACGGGGAAAAAGGCCGGATCTTTTTACACTCTAGCAATCATTTTGATTGTTATTGGCATAATACTAGTGATCATCGCGCTTGTGTTCTGTTTCGTTCAATCAAGAAGACGTAATTTCTTGTCAGCTTATCCTTCTTCTGCGGGAAAAGAAAGGATAGAGAGCTATAATTATCATCAATCCACAAACAAGAACAATAAACCCGCAGAATCCGTAAATCACACAAGGAGAGGATCGATGCCTGATCCAGGAGGAAGGCTTCTATTCGTGAGGGACGATATTCAAAGATTCGATCTTCAAGATCTTTTGAGAGCTTCAGCTGAAGTTCTTGGTAGCGGAACATTTGGTGCTTCATACAAAGCAGCGATATCTAGTGGACAAACATTGGTTGTGAAGAGGTATAAACATATGAACAATGTCGGAAGAGATGAGTTTCATGAGCATATGAGACGGTTAGGGAGATTAAACCATCCAAATATATTGCCTCTCGTTGCTTACTATTACCGTAGAGAGGAGAAGCTTCTAGTCACTGAATTTATGCCCAACAGTAGCTTGGCAAGCCATCTTCATGCGAATAATTCCGCTGGATTGGATTGGATAACACGTTTAAAGATCATAAAAGGAGTAGCAAAGGGTTTATCTTACTTGTTTGACGAGCTTCCAACACTAACAATCCCTCATGGTCATATGAAGTCATCGAATATTGTTTTAGACGATTCATTCGAGCCATTGTTAACAGATTACGCTCTAAGACCTATGATGAGCTCAGAGCACGCACATAACTTCATGACAGCTTACAAATCGCCAGAGTATAGACCTTCGAAAGGACAAATCATAACGAAGAAGACAGATGTTTGGTGTTTTGGTGTGTTGATCTTGGAAGTTTTGACAGGAAGATTCCCTGAAAATTACTTAACGCAAGGTTATGATTCTAACATGAGTCTTGTGACTTGGGTTAACGATATGGTTAAGGAGAAGAAAACAGGTGACGTGTTCGACAAGGAAATGAAAGGGAAGAAGAATTGTAAAGCGGAAATGATTAATTTGTTGAAAATTGGTTTGAGATGTTGCGAAGAAGAAGAAGAGAGGAGGATGGATATGAGAGAAGTTGTGGAGATGGTTGAGATGTTGAGAGAAGGAGAATCTGAAGATGATTTTGGTTCTATGGATCATCGAGGGACTCATAATAATGTGTATTCTTCCATGTTGTTAGACGATGATGACTTTGGTTTCTCGATGAATCGATGA

Protein Analysis

686

Amino Acids

76.86

Weight (kDa)

7.87

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 45 - 87 2.7e-07 Leucine rich repeat N-terminal domain
LRR_8 PF13855 137 - 197 2.4e-09 Leucine rich repeat
PK_Tyr_Ser-Thr PF07714 379 - 643 2e-28 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 379 - 643 3.7e-26 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 698
AccII CGCG 1 cut(s) 893
AciI CCGC 6 cut(s) 459, 956, 1017, 1149, 1395, 1844
AcsI RAATTY 3 cut(s) 188, 495, 1346
AcuI CTGAAG 3 cut(s) 1113, 1155, 1980
AfiI CCNNNNNNNGG 7 cut(s) 224, 445, 762, 818, 1061, 1324, 1637
AflII CTTAAG 1 cut(s) 736
AflIII ACRYGT 2 cut(s) 1415, 1803
AgeI ACCGGT 1 cut(s) 438
AhlI ACTAGT 1 cut(s) 880
AjiI CACGTC 1 cut(s) 1804
AjnI CCWGG 2 cut(s) 694, 1060
AjuI GAANNNNNNNTTGG 4 cut(s) 790, 822, 1953, 1985
Alw21I GWGCWC 2 cut(s) 1580, 1587
Alw26I GTCTC 3 cut(s) 120, 155, 1255
AoxI GGCC 3 cut(s) 42, 379, 828
ApeKI GCWGC 1 cut(s) 1175
ApoI RAATTY 3 cut(s) 188, 495, 1346
ArsI GACNNNNNNTTYG 2 cut(s) 1517, 1549
AseI ATTAAT 1 cut(s) 1854
AsiGI ACCGGT 1 cut(s) 438
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 2 cut(s) 6, 895
AspS9I GGNCC 3 cut(s) 16, 380, 662
AsuC2I CCSGG 2 cut(s) 304, 762
AsuHPI GGTGA 2 cut(s) 207, 1811
AsuII TTCGAA 2 cut(s) 682, 1634
AsuNHI GCTAGC 1 cut(s) 635
AvaII GGWCC 2 cut(s) 16, 662
BamHI GGATCC 2 cut(s) 202, 691
BanII GRGCYC 1 cut(s) 1580
BbsI GAAGAC 3 cut(s) 671, 928, 1664
Bbv12I GWGCWC 2 cut(s) 1580, 1587
BbvI GCAGC 1 cut(s) 1187
BccI CCATC 6 cut(s) 613, 653, 1290, 1383, 1900, 1924
BceAI ACGGC 1 cut(s) 57
BciT130I CCWGG 2 cut(s) 696, 1062
BclI TGATCA 1 cut(s) 885
BcnI CCSGG 2 cut(s) 304, 762
BcoDI GTCTC 3 cut(s) 120, 155, 1255
BcuI ACTAGT 1 cut(s) 880
BfaI CTAG 7 cut(s) 473, 542, 636, 848, 881, 1185, 1337
BfrI CTTAAG 1 cut(s) 736
BfuAI ACCTGC 1 cut(s) 698
BglII AGATCT 1 cut(s) 1114
BisI GCNGC 1 cut(s) 1176
BlsI GCNGC 1 cut(s) 1177
Bme1390I CCNGG 4 cut(s) 304, 696, 762, 1062
Bme18I GGWCC 2 cut(s) 16, 662
BmgBI CACGTC 1 cut(s) 1804
BmgT120I GGNCC 3 cut(s) 16, 380, 662
BmiI GGNNCC 5 cut(s) 18, 204, 330, 693, 768
BmrFI CCNGG 4 cut(s) 304, 696, 762, 1062
BmsI GCATC 4 cut(s) 130, 454, 718, 1041
BmtI GCTAGC 1 cut(s) 639
BpiI GAAGAC 3 cut(s) 671, 928, 1664
Bpu14I TTCGAA 2 cut(s) 682, 1634
BpuEI CTTGAG 2 cut(s) 305, 375
BpuMI CCSGG 2 cut(s) 304, 762
Bsa29I ATCGAT 2 cut(s) 1049, 2056
BsaJI CCNNGG 3 cut(s) 520, 761, 816
BsaWI WCCGGW 3 cut(s) 103, 438, 778
BsaXI ACNNNNNCTCC 4 cut(s) 5, 35, 796, 826
Bsc4I CCNNNNNNNGG 7 cut(s) 224, 445, 762, 818, 1061, 1324, 1637
Bse118I RCCGGY 1 cut(s) 438
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 2 cut(s) 696, 1062
BseCI ATCGAT 2 cut(s) 1049, 2056
BseDI CCNNGG 3 cut(s) 520, 761, 816
BseGI GGATG 2 cut(s) 1282, 1911
BseLI CCNNNNNNNGG 7 cut(s) 224, 445, 762, 818, 1061, 1324, 1637
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 2 cut(s) 131, 1593
BseRI GAGGAG 3 cut(s) 801, 1340, 1915
BseXI GCAGC 1 cut(s) 1187
Bsh1236I CGCG 1 cut(s) 893
BshFI GGCC 3 cut(s) 44, 381, 830
BshTI ACCGGT 1 cut(s) 438
BshVI ATCGAT 2 cut(s) 1049, 2056
BsiHKAI GWGCWC 2 cut(s) 1580, 1587
BsiSI CCGG 7 cut(s) 104, 131, 303, 439, 761, 779, 831
BslFI GGGAC 2 cut(s) 1100, 2005
BslI CCNNNNNNNGG 7 cut(s) 224, 445, 762, 818, 1061, 1324, 1637
BsmAI GTCTC 3 cut(s) 120, 155, 1255
BsmBI CGTCTC 1 cut(s) 1255
BsmFI GGGAC 2 cut(s) 1100, 2005
BsmI GAATGC 1 cut(s) 515
BsnI GGCC 3 cut(s) 44, 381, 830
Bsp119I TTCGAA 2 cut(s) 682, 1634
Bsp1286I GDGCHC 2 cut(s) 1580, 1587
BspACI CCGC 6 cut(s) 459, 956, 1017, 1149, 1395, 1844
BspANI GGCC 3 cut(s) 44, 381, 830
BspCNI CTCAG 2 cut(s) 130, 1592
BspDI ATCGAT 2 cut(s) 1049, 2056
BspFNI CGCG 1 cut(s) 893
BspHI TCATGA 3 cut(s) 360, 1249, 1599
BspLI GGNNCC 5 cut(s) 18, 204, 330, 693, 768
BspMI ACCTGC 1 cut(s) 698
BspOI GCTAGC 1 cut(s) 639
BspT104I TTCGAA 2 cut(s) 682, 1634
BspTI CTTAAG 1 cut(s) 736
BsrDI GCAATG 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 438
BssAI RCCGGY 1 cut(s) 438
BssECI CCNNGG 3 cut(s) 520, 761, 816
Bst2UI CCWGG 2 cut(s) 696, 1062
Bst4CI ACNGT 3 cut(s) 1266, 1319, 1361
Bst6I CTCTTC 4 cut(s) 757, 1202, 1231, 1890
BstAFI CTTAAG 1 cut(s) 736
BstBI TTCGAA 2 cut(s) 682, 1634
BstC8I GCNNGC 5 cut(s) 30, 504, 637, 1372, 1587
BstDEI CTNAG 3 cut(s) 117, 1562, 1579
BstDSI CCRYGG 1 cut(s) 816
BstENI CCTNNNNNAGG 2 cut(s) 1059, 1635
BstF5I GGATG 2 cut(s) 1282, 1911
BstFNI CGCG 1 cut(s) 893
BstHHI GCGC 2 cut(s) 6, 895
BstMAI GTCTC 3 cut(s) 120, 155, 1255
BstMWI GCNNNNNNNGC 2 cut(s) 512, 1371
BstNI CCWGG 2 cut(s) 696, 1062
BstSCI CCNGG 4 cut(s) 302, 694, 760, 1060
BstUI CGCG 1 cut(s) 893
BstV1I GCAGC 1 cut(s) 1187
BstV2I GAAGAC 3 cut(s) 671, 928, 1664
BstX2I RGATCY 5 cut(s) 202, 622, 691, 833, 1114
BstYI RGATCY 5 cut(s) 202, 622, 691, 833, 1114
Bsu15I ATCGAT 2 cut(s) 1049, 2056
BsuRI GGCC 3 cut(s) 44, 381, 830
BsuTUI ATCGAT 2 cut(s) 1049, 2056
BtgI CCRYGG 1 cut(s) 816
BtgZI GCGATG 1 cut(s) 874
BtrI CACGTC 1 cut(s) 1804
BtsCI GGATG 2 cut(s) 1282, 1911
BtsIMutI CAGTG 1 cut(s) 1341
BveI ACCTGC 1 cut(s) 698
Cac8I GCNNGC 5 cut(s) 30, 504, 637, 1372, 1587
CciI TCATGA 3 cut(s) 360, 1249, 1599
CfoI GCGC 2 cut(s) 6, 895
Cfr10I RCCGGY 1 cut(s) 438
Cfr13I GGNCC 3 cut(s) 16, 380, 662
ClaI ATCGAT 2 cut(s) 1049, 2056
CspAI ACCGGT 1 cut(s) 438
DdeI CTNAG 3 cut(s) 117, 1562, 1579
DraI TTTAAA 1 cut(s) 1422
Eam1104I CTCTTC 4 cut(s) 757, 1202, 1231, 1890
EarI CTCTTC 4 cut(s) 757, 1202, 1231, 1890
Ecl136II GAGCTC 1 cut(s) 1578
Eco24I GRGCYC 1 cut(s) 1580
Eco32I GATATC 1 cut(s) 1182
Eco47I GGWCC 2 cut(s) 16, 662
Eco53kI GAGCTC 1 cut(s) 1578
Eco57I CTGAAG 3 cut(s) 1113, 1155, 1980
EcoICRI GAGCTC 1 cut(s) 1578
EcoNI CCTNNNNNAGG 2 cut(s) 1059, 1635
EcoO109I RGGNCCY 1 cut(s) 16
EcoRII CCWGG 2 cut(s) 694, 1060
EcoRV GATATC 1 cut(s) 1182
EcoT22I ATGCAT 1 cut(s) 469
EcoT38I GRGCYC 1 cut(s) 1580
Esp3I CGTCTC 1 cut(s) 1255
FaqI GGGAC 2 cut(s) 1100, 2005
FauI CCCGC 3 cut(s) 466, 949, 1024
FauNDI CATATG 3 cut(s) 1221, 1257, 1500
FbaI TGATCA 1 cut(s) 885
Fnu4HI GCNGC 1 cut(s) 1176
FokI GGATG 2 cut(s) 1269, 1918
FriOI GRGCYC 1 cut(s) 1580
Fsp4HI GCNGC 1 cut(s) 1176
FspBI CTAG 7 cut(s) 473, 542, 636, 848, 881, 1185, 1337
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 894
GluI GCNGC 1 cut(s) 1176
HaeIII GGCC 3 cut(s) 44, 381, 830
HapII CCGG 7 cut(s) 104, 131, 303, 439, 761, 779, 831
HhaI GCGC 2 cut(s) 6, 895
Hin6I GCGC 2 cut(s) 4, 893
HinP1I GCGC 2 cut(s) 4, 893
HincII GTYRAC 2 cut(s) 1548, 1771
HindII GTYRAC 2 cut(s) 1548, 1771
HindIII AAGCTT 2 cut(s) 355, 1331
HpaI GTTAAC 2 cut(s) 1548, 1771
HpaII CCGG 7 cut(s) 104, 131, 303, 439, 761, 779, 831
HphI GGTGA 2 cut(s) 207, 1811
Hpy166II GTNNAC 5 cut(s) 24, 405, 1190, 1548, 1771
Hpy188I TCNGA 6 cut(s) 139, 187, 521, 1235, 1582, 1960
Hpy188III TCNNGA 8 cut(s) 361, 656, 918, 1081, 1112, 1250, 1600, 2047
Hpy8I GTNNAC 5 cut(s) 24, 405, 1190, 1548, 1771
HpyAV CCTTC 7 cut(s) 72, 543, 613, 957, 1062, 1641, 1943
HpyCH4III ACNGT 3 cut(s) 1266, 1319, 1361
HpyCH4IV ACGT 4 cut(s) 267, 925, 1417, 1803
HpyCH4V TGCA 4 cut(s) 69, 143, 467, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 512, 1371
HpyF3I CTNAG 3 cut(s) 117, 1562, 1579
HpySE526I ACGT 4 cut(s) 267, 925, 1417, 1803
HspAI GCGC 2 cut(s) 4, 893
Ksp22I TGATCA 1 cut(s) 885
KspAI GTTAAC 2 cut(s) 1548, 1771
LmnI GCTCC 1 cut(s) 736
Lsp1109I GCAGC 1 cut(s) 1187
LweI GCATC 4 cut(s) 130, 454, 718, 1041
MaeI CTAG 7 cut(s) 473, 542, 636, 848, 881, 1185, 1337
MaeII ACGT 4 cut(s) 267, 925, 1417, 1803
MaeIII GTNAC 5 cut(s) 35, 710, 1339, 1759, 1799
MfeI CAATTG 1 cut(s) 7
MflI RGATCY 5 cut(s) 202, 622, 691, 833, 1114
MhlI GDGCHC 2 cut(s) 1580, 1587
MlyI GAGTC 2 cut(s) 1762, 1987
MmeI TCCRAC 2 cut(s) 1213, 1499
Mph1103I ATGCAT 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 678
MslI CAYNNNNRTG 3 cut(s) 217, 1380, 2001
MspA1I CMGCKG 2 cut(s) 1133, 1397
MspCI CTTAAG 1 cut(s) 736
MspI CCGG 7 cut(s) 104, 131, 303, 439, 761, 779, 831
MspR9I CCNGG 4 cut(s) 304, 696, 762, 1062
MunI CAATTG 1 cut(s) 7
Mva1269I GAATGC 1 cut(s) 515
MvaI CCWGG 2 cut(s) 696, 1062
MvnI CGCG 1 cut(s) 893
MwoI GCNNNNNNNGC 2 cut(s) 512, 1371
NciI CCSGG 2 cut(s) 304, 762
NdeI CATATG 3 cut(s) 1221, 1257, 1500
NheI GCTAGC 1 cut(s) 635
NlaIV GGNNCC 5 cut(s) 18, 204, 330, 693, 768
NmuCI GTSAC 3 cut(s) 1339, 1759, 1799
NsbI TGCGCA 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 469
NspV TTCGAA 2 cut(s) 682, 1634
PagI TCATGA 3 cut(s) 360, 1249, 1599
PcsI WCGNNNNNNNCGW 2 cut(s) 1086, 1533
PctI GAATGC 1 cut(s) 515
PdmI GAANNNNTTC 1 cut(s) 678
PfoI TCCNGGA 1 cut(s) 1060
PinAI ACCGGT 1 cut(s) 438
PkrI GCNGC 1 cut(s) 1177
PleI GAGTC 2 cut(s) 1761, 1987
PpsI GAGTC 2 cut(s) 1761, 1987
PpuMI RGGWCCY 1 cut(s) 16
PshBI ATTAAT 1 cut(s) 1854
Psp124BI GAGCTC 1 cut(s) 1580
Psp5II RGGWCCY 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 694, 1060
PspGI CCWGG 2 cut(s) 694, 1060
PspN4I GGNNCC 5 cut(s) 18, 204, 330, 693, 768
PspPI GGNCC 3 cut(s) 16, 380, 662
PspPPI RGGWCCY 1 cut(s) 16
PsuI RGATCY 5 cut(s) 202, 622, 691, 833, 1114
PvuII CAGCTG 1 cut(s) 1133
RseI CAYNNNNRTG 3 cut(s) 217, 1380, 2001
SacI GAGCTC 1 cut(s) 1580
SatI GCNGC 1 cut(s) 1176
Sau96I GGNCC 3 cut(s) 16, 380, 662
SchI GAGTC 2 cut(s) 1762, 1987
ScrFI CCNGG 4 cut(s) 304, 696, 762, 1062
SduI GDGCHC 2 cut(s) 1580, 1587
SfaNI GCATC 4 cut(s) 130, 454, 718, 1041
SfuI TTCGAA 2 cut(s) 682, 1634
SinI GGWCC 2 cut(s) 16, 662
SmiMI CAYNNNNRTG 3 cut(s) 217, 1380, 2001
SmlI CTYRAG 3 cut(s) 284, 390, 736
SmoI CTYRAG 3 cut(s) 284, 390, 736
SpeI ACTAGT 1 cut(s) 880
SsiI CCGC 6 cut(s) 459, 956, 1017, 1149, 1395, 1844
SspI AATATT 1 cut(s) 1516
SspMI CTAG 7 cut(s) 473, 542, 636, 848, 881, 1185, 1337
SstI GAGCTC 1 cut(s) 1580
StyD4I CCNGG 4 cut(s) 302, 694, 760, 1060
TaaI ACNGT 3 cut(s) 1266, 1319, 1361
TaiI ACGT 4 cut(s) 270, 928, 1420, 1806
TaqII GACCGA 1 cut(s) 679
TscAI CASTG 1 cut(s) 1348
TseFI GTSAC 3 cut(s) 1339, 1759, 1799
TseI GCWGC 1 cut(s) 1175
Tsp45I GTSAC 3 cut(s) 1339, 1759, 1799
TspGWI ACGGA 1 cut(s) 1015
TspRI CASTG 1 cut(s) 1348
Vha464I CTTAAG 1 cut(s) 736
VpaK11BI GGWCC 2 cut(s) 16, 662
VspI ATTAAT 1 cut(s) 1854
XagI CCTNNNNNAGG 2 cut(s) 1059, 1635
XapI RAATTY 3 cut(s) 188, 495, 1346
XcmI CCANNNNNNNNNTGG 1 cut(s) 1363
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 7 cut(s) 473, 542, 636, 848, 881, 1185, 1337
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.