Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002722

Physical Location & Seq

Genomic Coordinates Reverse (-)

64356321 .. 64358656

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27440

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCTCGTAACAAAGCAGCAGCAGCAGCACACAATCAATTGCTGCTATTTCTCTTAGCAATAGTATCATCATGTGTTATCTCATCTTCTAGTGCTGCTAGTGAGGCTGAAACGCTCATCACCTTCAAGAATTCTCTATCCGATACCTCGGCACTAGATAACTGGAATGCTTCTACAAAACCCTGCACCGGGTCCCAGAGCCATTGGACGGGTGTGCAGTGTAACAACGGGAGCGTATCTGGGCTGCAGCTGGAGAAAATGAGCCTAACTGGCCTGATTGACATTGACACGCTCACACAGTTGCCGGCCCTCAAGGCCATAAGCTTCATGAACAACGGCTTTGGAGGTCCACTGCCCGATGTGAAGAGACTTTCACTCCAAGGTCTCTACTTATCCCAGAACCAAGTCTCTGGTGATATCCCGGATGACGCTTTCAGTGGCATGGGTGATACCTTGAAGAAGCTTTACTTGGCCAAAAATGGATTTACGGGGGAGATACCGAGTTCTTTGGTTGATTTGCCTAAGCTCATTGAGTTGGACCTTGGGGATAACCAATTTACAGGGGAGATTCCATATTTTCATCCAGGGGATTGGACGGTGATGAATCTGGCAAACAACAGATTGGAGGGTCAGATTCCGGCATCACTAAGCAACTTAGATGCTGCTGAGTTAGAGGGTAGGCATTTGCTTCAAGATATGTCGTTGACAGTGTCAAGAAAGATATCATTGTATGATCAGGAAATTGTTGACCGGCCAAGCAATTCGAACTTTCGAAGTTCTCAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

262

Amino Acids

28.17

Weight (kDa)

4.84

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	33 - 75	9.4e-09	Leucine rich repeat N-terminal domain
LRR_8	PF13855	125 - 186	3.1e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50610 AT3G20190 AT3G20190
fragaria_vesca	FvH4_2g36521 FvH4_2g36530 FvH4_6g36540
malus_domestica	MD08G1125100.v1.1 MD08G1125200.v1.1 MD09G1167500.v1.1 MD15G1104700.v1.1 MD17G1160800.v1.1
prunus_persica	Prupe.1G456700_v2.0.a1 Prupe.1G456800_v2.0.a1 Prupe.3G025500_v2.0.a1
pyrus_communis	pycom08g10400 pycom09g08500 pycom15g09530 pycom17g15310
rosa_chinensis	RchiOBHm_Chr2g0149011 RchiOBHm_Chr6g0305321 RchiOBHm_Chr6g0305341
rosa_laevigata	RLG00000010898 RLG00000010899 RLG00000020362
rosa_multiflora	Rmu_sc0007360.1_g000007 Rmu_ssc0000148.1_g000003
rosa_roxburghii	Rroxscaffold_7G00162890 Rroxscaffold_7G00162900
rosa_rugosa	Rorug02G0408600 Rorug06G0339600 Rorug06G0339700.1
rosa_samantha	Rh2AG467900 Rh2BG480700 Rh2CG454300 Rh2DG489600 Rh6AG451200 Rh6AG451400
rosa_wichuraiana	Rw2G038120 Rw6G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	471, 752
AcsI	RAATTY	1 cut(s)	130
AfiI	CCNNNNNNNGG	3 cut(s)	188, 189, 208
AgsI	TTSAA	3 cut(s)	127, 457, 692
AjnI	CCWGG	1 cut(s)	583
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	4 cut(s)	250, 324, 463, 526
AluI	AGCT	4 cut(s)	250, 324, 463, 526
Alw26I	GTCTC	3 cut(s)	361, 389, 412
AoxI	GGCC	5 cut(s)	271, 306, 315, 471, 752
ApeKI	GCWGC	9 cut(s)	17, 20, 23, 26, 43, 95, 244, 247, 662
ApoI	RAATTY	1 cut(s)	130
AspS9I	GGNCC	4 cut(s)	192, 307, 347, 538
AsuC2I	CCSGG	2 cut(s)	190, 422
AsuHPI	GGTGA	4 cut(s)	112, 425, 458, 610
AsuII	TTCGAA	2 cut(s)	764, 772
AvaII	GGWCC	3 cut(s)	192, 347, 538
BalI	TGGCCA	1 cut(s)	473
BarI	GAAGNNNNNNTAC	2 cut(s)	449, 481
BbvI	GCAGC	9 cut(s)	29, 30, 32, 35, 38, 82, 231, 259, 649
BceAI	ACGGC	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	585
BclI	TGATCA	1 cut(s)	733
BcnI	CCSGG	2 cut(s)	190, 422
BcoDI	GTCTC	3 cut(s)	361, 389, 412
BfaI	CTAG	3 cut(s)	90, 99, 155
BfmI	CTRYAG	1 cut(s)	245
BglI	GCCNNNNNGGC	2 cut(s)	270, 314
BisI	GCNGC	9 cut(s)	18, 21, 24, 27, 44, 96, 245, 248, 663
BlsI	GCNGC	9 cut(s)	19, 22, 25, 28, 45, 97, 246, 249, 664
Bme1390I	CCNGG	3 cut(s)	190, 422, 585
Bme18I	GGWCC	3 cut(s)	192, 347, 538
BmgT120I	GGNCC	4 cut(s)	192, 307, 347, 538
BmiI	GGNNCC	2 cut(s)	193, 194
BmrFI	CCNGG	3 cut(s)	190, 422, 585
BmsI	GCATC	2 cut(s)	649, 650
BpmI	CTGGAG	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	522
Bpu14I	TTCGAA	2 cut(s)	764, 772
BpuEI	CTTGAG	2 cut(s)	296, 765
BpuMI	CCSGG	2 cut(s)	190, 422
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	4 cut(s)	147, 379, 541, 584
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 189, 208
Bse118I	RCCGGY	2 cut(s)	304, 750
Bse1I	ACTGG	2 cut(s)	167, 274
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	4 cut(s)	147, 379, 541, 584
BseGI	GGATG	2 cut(s)	430, 580
BseLI	CCNNNNNNNGG	3 cut(s)	188, 189, 208
BseMII	CTCAG	1 cut(s)	657
BseNI	ACTGG	2 cut(s)	167, 274
BseXI	GCAGC	9 cut(s)	29, 30, 32, 35, 38, 82, 231, 259, 649
BsgI	GTGCAG	2 cut(s)	169, 236
BshFI	GGCC	5 cut(s)	273, 308, 317, 473, 754
BsiSI	CCGG	5 cut(s)	189, 305, 422, 638, 751
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	3 cut(s)	188, 189, 208
BsmAI	GTCTC	3 cut(s)	361, 389, 412
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	5 cut(s)	273, 308, 317, 473, 754
Bso31I	GGTCTC	1 cut(s)	389
Bsp119I	TTCGAA	2 cut(s)	764, 772
Bsp143I	GATC	1 cut(s)	733
BspANI	GGCC	5 cut(s)	273, 308, 317, 473, 754
BspCNI	CTCAG	1 cut(s)	658
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	193, 194
BspMAI	CTGCAG	1 cut(s)	249
BspT104I	TTCGAA	2 cut(s)	764, 772
BspTNI	GGTCTC	1 cut(s)	389
BsrFI	RCCGGY	2 cut(s)	304, 750
BsrI	ACTGG	2 cut(s)	167, 274
BssAI	RCCGGY	2 cut(s)	304, 750
BssECI	CCNNGG	4 cut(s)	147, 379, 541, 584
BssMI	GATC	1 cut(s)	733
BssT1I	CCWWGG	2 cut(s)	379, 541
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	3 cut(s)	300, 598, 709
Bst6I	CTCTTC	1 cut(s)	359
BstBI	TTCGAA	2 cut(s)	764, 772
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	5 cut(s)	55, 522, 647, 655, 666
BstF5I	GGATG	2 cut(s)	430, 580
BstKTI	GATC	1 cut(s)	736
BstMAI	GTCTC	3 cut(s)	361, 389, 412
BstMBI	GATC	1 cut(s)	733
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 26, 104, 270, 314
BstNI	CCWGG	1 cut(s)	585
BstSCI	CCNGG	3 cut(s)	188, 420, 583
BstSFI	CTRYAG	1 cut(s)	245
BstV1I	GCAGC	9 cut(s)	29, 30, 32, 35, 38, 82, 231, 259, 649
BstXI	CCANNNNNNTGG	2 cut(s)	410, 591
BsuRI	GGCC	5 cut(s)	273, 308, 317, 473, 754
BtsCI	GGATG	2 cut(s)	430, 580
BtsI	GCAGTG	2 cut(s)	224, 350
BtsIMutI	CAGTG	4 cut(s)	224, 350, 442, 714
Cac8I	GCNNGC	1 cut(s)	306
CciI	TCATGA	1 cut(s)	327
Cfr10I	RCCGGY	2 cut(s)	304, 750
Cfr13I	GGNCC	4 cut(s)	192, 307, 347, 538
CseI	GACGC	1 cut(s)	437
CviAII	CATG	3 cut(s)	72, 328, 442
DdeI	CTNAG	5 cut(s)	55, 522, 647, 655, 666
DpnI	GATC	1 cut(s)	735
DpnII	GATC	1 cut(s)	733
EaeI	YGGCCR	2 cut(s)	471, 752
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco130I	CCWWGG	2 cut(s)	379, 541
Eco31I	GGTCTC	1 cut(s)	389
Eco32I	GATATC	2 cut(s)	418, 723
Eco47I	GGWCC	3 cut(s)	192, 347, 538
EcoO109I	RGGNCCY	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	583
EcoRV	GATATC	2 cut(s)	418, 723
EcoT14I	CCWWGG	2 cut(s)	379, 541
ErhI	CCWWGG	2 cut(s)	379, 541
FaeI	CATG	3 cut(s)	75, 331, 445
FaiI	YATR	8 cut(s)	73, 320, 329, 443, 574, 698, 732, 787
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	3 cut(s)	71, 327, 441
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	9 cut(s)	18, 21, 24, 27, 44, 96, 245, 248, 663
FokI	GGATG	2 cut(s)	437, 567
Fsp4HI	GCNGC	9 cut(s)	18, 21, 24, 27, 44, 96, 245, 248, 663
FspBI	CTAG	3 cut(s)	90, 99, 155
GluI	GCNGC	9 cut(s)	18, 21, 24, 27, 44, 96, 245, 248, 663
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	5 cut(s)	273, 308, 317, 473, 754
HapII	CCGG	5 cut(s)	189, 305, 422, 638, 751
HgaI	GACGC	1 cut(s)	437
Hin1II	CATG	3 cut(s)	75, 331, 445
HincII	GTYRAC	2 cut(s)	705, 748
HindII	GTYRAC	2 cut(s)	705, 748
HindIII	AAGCTT	2 cut(s)	322, 461
HinfI	GANTC	3 cut(s)	568, 604, 634
HpaII	CCGG	5 cut(s)	189, 305, 422, 638, 751
HphI	GGTGA	4 cut(s)	112, 425, 458, 610
Hpy166II	GTNNAC	3 cut(s)	350, 705, 748
Hpy188I	TCNGA	2 cut(s)	142, 633
Hpy188III	TCNNGA	5 cut(s)	127, 328, 692, 714, 737
Hpy8I	GTNNAC	3 cut(s)	350, 705, 748
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	3 cut(s)	300, 598, 709
HpyCH4V	TGCA	3 cut(s)	186, 217, 247
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 26, 104, 270, 314
HpyF3I	CTNAG	5 cut(s)	55, 522, 647, 655, 666
Hsp92II	CATG	3 cut(s)	75, 331, 445
KflI	GGGWCCC	1 cut(s)	192
KroI	GCCGGC	1 cut(s)	304
KroNI	GCCGGC	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	1 cut(s)	733
LmnI	GCTCC	1 cut(s)	231
Lsp1109I	GCAGC	9 cut(s)	29, 30, 32, 35, 38, 82, 231, 259, 649
LweI	GCATC	2 cut(s)	649, 650
MaeI	CTAG	3 cut(s)	90, 99, 155
MaeIII	GTNAC	2 cut(s)	8, 221
MalI	GATC	1 cut(s)	735
MboI	GATC	1 cut(s)	733
MboII	GAAGA	3 cut(s)	78, 376, 469
MfeI	CAATTG	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	5 cut(s)	38, 130, 554, 741, 760
MluNI	TGGCCA	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	516
MnlI	CCTC	6 cut(s)	97, 157, 320, 338, 619, 667
Mox20I	TGGCCA	1 cut(s)	473
MroNI	GCCGGC	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	473
Msp20I	TGGCCA	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	5 cut(s)	189, 305, 422, 638, 751
MspR9I	CCNGG	3 cut(s)	190, 422, 585
MunI	CAATTG	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	5 cut(s)	23, 26, 104, 270, 314
NaeI	GCCGGC	1 cut(s)	306
NciI	CCSGG	2 cut(s)	190, 422
NdeII	GATC	1 cut(s)	733
NgoMIV	GCCGGC	1 cut(s)	304
NlaIII	CATG	3 cut(s)	75, 331, 445
NlaIV	GGNNCC	2 cut(s)	193, 194
NmeAIII	GCCGAG	1 cut(s)	128
NspV	TTCGAA	2 cut(s)	764, 772
PagI	TCATGA	1 cut(s)	327
PctI	GAATGC	1 cut(s)	172
PdiI	GCCGGC	1 cut(s)	306
PfeI	GAWTC	3 cut(s)	568, 604, 634
PflFI	GACNNNGTC	1 cut(s)	709
PfoI	TCCNGGA	1 cut(s)	420
PkrI	GCNGC	9 cut(s)	19, 22, 25, 28, 45, 97, 246, 249, 664
PpuMI	RGGWCCY	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	2 cut(s)	193, 194
PspPI	GGNCC	4 cut(s)	192, 307, 347, 538
PspPPI	RGGWCCY	1 cut(s)	192
PstI	CTGCAG	1 cut(s)	249
PsyI	GACNNNGTC	1 cut(s)	709
PvuII	CAGCTG	1 cut(s)	250
SatI	GCNGC	9 cut(s)	18, 21, 24, 27, 44, 96, 245, 248, 663
Sau3AI	GATC	1 cut(s)	733
Sau96I	GGNCC	4 cut(s)	192, 307, 347, 538
ScrFI	CCNGG	3 cut(s)	190, 422, 585
SfaNI	GCATC	2 cut(s)	649, 650
SfcI	CTRYAG	1 cut(s)	245
SfiI	GGCCNNNNNGGCC	1 cut(s)	314
SfuI	TTCGAA	2 cut(s)	764, 772
SinI	GGWCC	3 cut(s)	192, 347, 538
SmlI	CTYRAG	2 cut(s)	311, 780
SmoI	CTYRAG	2 cut(s)	311, 780
Sse9I	AATT	5 cut(s)	38, 130, 554, 741, 760
SspMI	CTAG	3 cut(s)	90, 99, 155
StyD4I	CCNGG	3 cut(s)	188, 420, 583
StyI	CCWWGG	2 cut(s)	379, 541
TaaI	ACNGT	3 cut(s)	300, 598, 709
TaqI	TCGA	2 cut(s)	764, 772
TasI	AATT	5 cut(s)	38, 130, 554, 741, 760
TfiI	GAWTC	3 cut(s)	568, 604, 634
TscAI	CASTG	4 cut(s)	224, 357, 442, 714
TseI	GCWGC	9 cut(s)	17, 20, 23, 26, 43, 95, 244, 247, 662
TspDTI	ATGAA	4 cut(s)	316, 344, 569, 617
TspRI	CASTG	4 cut(s)	224, 357, 442, 714
Tth111I	GACNNNGTC	1 cut(s)	709
VpaK11BI	GGWCC	3 cut(s)	192, 347, 538
XapI	RAATTY	1 cut(s)	130
XspI	CTAG	3 cut(s)	90, 99, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.