Rh6AG451400

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002722
Physical Location & Seq
Reverse (-)
63719814 .. 63720497
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG451400.1

Sequence Viewer

Length: 684 bp
ATGGCTCGTAACAAAGCAGCAGCAGCAGCACACAATCAATTGCTGCTATTTCTCTTAGCAATAGTATCATCATGTGTTATCTCATCTTCTAGTGCTGCTAGTGAGGCTGAAACGCTCATCACCTTCAAGAATTCTCTATCCGATACCTCGGCACTAGATAACTGGAATGCTTCTACAAAACCCTGCACCGGGTCCCAGAGCCATTGGACGGGTGTGCAGTGTAACAACGGGAGCGTATCTGGGCTGCAGCTGGAGAAAATGAGCCTAACTGGCCTGATTGACATTGACACGCTCACACAGTTGCCGGCCCTCAAGGCCATAAGCTTCATGAACAACGGCTTTGGAGGTCCACTGCCCGATGTGAAGAGACTTTCACTCCAAGGTCTCTACTTATCCCAGAACCAAGTCTCTGGTGATATCCCGGATGACGCTTTCAGTGGCATGGGTGATACCTTGAAGAAGCTTTACTTGGCCAAAAATGGATTTACGGGGGAGATACCGAGTTCTTTGGTTGATTTGCCTAAGCTCATTGAGTTGGACCTTGGGGATAACCAATTTACAGGGGAGATTCCATATTTTCATCCAGGGGATTGGACGGTGATGAATCTGGCAAACAACAGATTGGAGGGTCAGATTCCGGCATCACTAAGCAACTTAGATGCTGCTGAGTTAGAGGGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

227

Amino Acids

24.15

Weight (kDa)

4.67

Isoelectric Point (pI)

26.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 33 - 75 7.5e-09 Leucine rich repeat N-terminal domain
LRR_8 PF13855 125 - 186 2.4e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 1 cut(s) 130
AfiI CCNNNNNNNGG 3 cut(s) 188, 189, 208
AgsI TTSAA 2 cut(s) 127, 457
AjnI CCWGG 1 cut(s) 583
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AluBI AGCT 4 cut(s) 250, 324, 463, 526
AluI AGCT 4 cut(s) 250, 324, 463, 526
Alw26I GTCTC 3 cut(s) 361, 389, 412
AoxI GGCC 4 cut(s) 271, 306, 315, 471
ApeKI GCWGC 9 cut(s) 17, 20, 23, 26, 43, 95, 244, 247, 662
ApoI RAATTY 1 cut(s) 130
AspS9I GGNCC 4 cut(s) 192, 307, 347, 538
AsuC2I CCSGG 2 cut(s) 190, 422
AsuHPI GGTGA 4 cut(s) 112, 425, 458, 610
AvaII GGWCC 3 cut(s) 192, 347, 538
BalI TGGCCA 1 cut(s) 473
BarI GAAGNNNNNNTAC 2 cut(s) 449, 481
BbvI GCAGC 9 cut(s) 29, 30, 32, 35, 38, 82, 231, 259, 649
BceAI ACGGC 1 cut(s) 352
BciT130I CCWGG 1 cut(s) 585
BcnI CCSGG 2 cut(s) 190, 422
BcoDI GTCTC 3 cut(s) 361, 389, 412
BfaI CTAG 3 cut(s) 90, 99, 155
BfmI CTRYAG 1 cut(s) 245
BglI GCCNNNNNGGC 2 cut(s) 270, 314
BisI GCNGC 9 cut(s) 18, 21, 24, 27, 44, 96, 245, 248, 663
BlsI GCNGC 9 cut(s) 19, 22, 25, 28, 45, 97, 246, 249, 664
Bme1390I CCNGG 3 cut(s) 190, 422, 585
Bme18I GGWCC 3 cut(s) 192, 347, 538
BmgT120I GGNCC 4 cut(s) 192, 307, 347, 538
BmiI GGNNCC 2 cut(s) 193, 194
BmrFI CCNGG 3 cut(s) 190, 422, 585
BmsI GCATC 2 cut(s) 649, 650
BpmI CTGGAG 1 cut(s) 272
Bpu10I CCTNAGC 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 2 cut(s) 190, 422
BsaI GGTCTC 1 cut(s) 389
BsaJI CCNNGG 4 cut(s) 147, 379, 541, 584
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 189, 208
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 2 cut(s) 167, 274
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 4 cut(s) 147, 379, 541, 584
BseGI GGATG 2 cut(s) 430, 580
BseLI CCNNNNNNNGG 3 cut(s) 188, 189, 208
BseMII CTCAG 1 cut(s) 657
BseNI ACTGG 2 cut(s) 167, 274
BseXI GCAGC 9 cut(s) 29, 30, 32, 35, 38, 82, 231, 259, 649
BsgI GTGCAG 2 cut(s) 169, 236
BshFI GGCC 4 cut(s) 273, 308, 317, 473
BsiSI CCGG 4 cut(s) 189, 305, 422, 638
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 3 cut(s) 188, 189, 208
BsmAI GTCTC 3 cut(s) 361, 389, 412
BsmFI GGGAC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 4 cut(s) 273, 308, 317, 473
Bso31I GGTCTC 1 cut(s) 389
BspANI GGCC 4 cut(s) 273, 308, 317, 473
BspCNI CTCAG 1 cut(s) 658
BspHI TCATGA 1 cut(s) 327
BspLI GGNNCC 2 cut(s) 193, 194
BspMAI CTGCAG 1 cut(s) 249
BspTNI GGTCTC 1 cut(s) 389
BsrFI RCCGGY 1 cut(s) 304
BsrI ACTGG 2 cut(s) 167, 274
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 4 cut(s) 147, 379, 541, 584
BssT1I CCWWGG 2 cut(s) 379, 541
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 2 cut(s) 300, 598
Bst6I CTCTTC 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 5 cut(s) 55, 522, 647, 655, 666
BstF5I GGATG 2 cut(s) 430, 580
BstMAI GTCTC 3 cut(s) 361, 389, 412
BstMWI GCNNNNNNNGC 5 cut(s) 23, 26, 104, 270, 314
BstNI CCWGG 1 cut(s) 585
BstSCI CCNGG 3 cut(s) 188, 420, 583
BstSFI CTRYAG 1 cut(s) 245
BstV1I GCAGC 9 cut(s) 29, 30, 32, 35, 38, 82, 231, 259, 649
BstXI CCANNNNNNTGG 2 cut(s) 410, 591
BsuRI GGCC 4 cut(s) 273, 308, 317, 473
BtsCI GGATG 2 cut(s) 430, 580
BtsI GCAGTG 2 cut(s) 224, 350
BtsIMutI CAGTG 3 cut(s) 224, 350, 442
Cac8I GCNNGC 1 cut(s) 306
CciI TCATGA 1 cut(s) 327
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 4 cut(s) 192, 307, 347, 538
CseI GACGC 1 cut(s) 437
CviAII CATG 3 cut(s) 72, 328, 442
DdeI CTNAG 5 cut(s) 55, 522, 647, 655, 666
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 359
EarI CTCTTC 1 cut(s) 359
Eco130I CCWWGG 2 cut(s) 379, 541
Eco31I GGTCTC 1 cut(s) 389
Eco32I GATATC 1 cut(s) 418
Eco47I GGWCC 3 cut(s) 192, 347, 538
EcoO109I RGGNCCY 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 583
EcoRV GATATC 1 cut(s) 418
EcoT14I CCWWGG 2 cut(s) 379, 541
ErhI CCWWGG 2 cut(s) 379, 541
FaeI CATG 3 cut(s) 75, 331, 445
FaiI YATR 5 cut(s) 73, 320, 329, 443, 574
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FaqI GGGAC 1 cut(s) 178
FatI CATG 3 cut(s) 71, 327, 441
Fnu4HI GCNGC 9 cut(s) 18, 21, 24, 27, 44, 96, 245, 248, 663
FokI GGATG 2 cut(s) 437, 567
Fsp4HI GCNGC 9 cut(s) 18, 21, 24, 27, 44, 96, 245, 248, 663
FspBI CTAG 3 cut(s) 90, 99, 155
GluI GCNGC 9 cut(s) 18, 21, 24, 27, 44, 96, 245, 248, 663
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 4 cut(s) 273, 308, 317, 473
HapII CCGG 4 cut(s) 189, 305, 422, 638
HgaI GACGC 1 cut(s) 437
Hin1II CATG 3 cut(s) 75, 331, 445
HindIII AAGCTT 2 cut(s) 322, 461
HinfI GANTC 3 cut(s) 568, 604, 634
HpaII CCGG 4 cut(s) 189, 305, 422, 638
HphI GGTGA 4 cut(s) 112, 425, 458, 610
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 2 cut(s) 142, 633
Hpy188III TCNNGA 2 cut(s) 127, 328
Hpy8I GTNNAC 1 cut(s) 350
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 2 cut(s) 300, 598
HpyCH4V TGCA 3 cut(s) 186, 217, 247
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 26, 104, 270, 314
HpyF3I CTNAG 5 cut(s) 55, 522, 647, 655, 666
Hsp92II CATG 3 cut(s) 75, 331, 445
KflI GGGWCCC 1 cut(s) 192
KroI GCCGGC 1 cut(s) 304
KroNI GCCGGC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 231
Lsp1109I GCAGC 9 cut(s) 29, 30, 32, 35, 38, 82, 231, 259, 649
LweI GCATC 2 cut(s) 649, 650
MaeI CTAG 3 cut(s) 90, 99, 155
MaeIII GTNAC 2 cut(s) 8, 221
MboII GAAGA 3 cut(s) 78, 376, 469
MfeI CAATTG 1 cut(s) 38
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 3 cut(s) 38, 130, 554
MluNI TGGCCA 1 cut(s) 473
MmeI TCCRAC 1 cut(s) 516
MnlI CCTC 6 cut(s) 97, 157, 320, 338, 619, 667
Mox20I TGGCCA 1 cut(s) 473
MroNI GCCGGC 1 cut(s) 304
MscI TGGCCA 1 cut(s) 473
Msp20I TGGCCA 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 250
MspI CCGG 4 cut(s) 189, 305, 422, 638
MspR9I CCNGG 3 cut(s) 190, 422, 585
MunI CAATTG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 172
MvaI CCWGG 1 cut(s) 585
MwoI GCNNNNNNNGC 5 cut(s) 23, 26, 104, 270, 314
NaeI GCCGGC 1 cut(s) 306
NciI CCSGG 2 cut(s) 190, 422
NgoMIV GCCGGC 1 cut(s) 304
NlaIII CATG 3 cut(s) 75, 331, 445
NlaIV GGNNCC 2 cut(s) 193, 194
NmeAIII GCCGAG 1 cut(s) 128
PagI TCATGA 1 cut(s) 327
PctI GAATGC 1 cut(s) 172
PdiI GCCGGC 1 cut(s) 306
PfeI GAWTC 3 cut(s) 568, 604, 634
PfoI TCCNGGA 1 cut(s) 420
PkrI GCNGC 9 cut(s) 19, 22, 25, 28, 45, 97, 246, 249, 664
PpuMI RGGWCCY 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 583
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 2 cut(s) 193, 194
PspPI GGNCC 4 cut(s) 192, 307, 347, 538
PspPPI RGGWCCY 1 cut(s) 192
PstI CTGCAG 1 cut(s) 249
PvuII CAGCTG 1 cut(s) 250
SatI GCNGC 9 cut(s) 18, 21, 24, 27, 44, 96, 245, 248, 663
Sau96I GGNCC 4 cut(s) 192, 307, 347, 538
ScrFI CCNGG 3 cut(s) 190, 422, 585
SfaNI GCATC 2 cut(s) 649, 650
SfcI CTRYAG 1 cut(s) 245
SfiI GGCCNNNNNGGCC 1 cut(s) 314
SinI GGWCC 3 cut(s) 192, 347, 538
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 3 cut(s) 38, 130, 554
SspMI CTAG 3 cut(s) 90, 99, 155
StyD4I CCNGG 3 cut(s) 188, 420, 583
StyI CCWWGG 2 cut(s) 379, 541
TaaI ACNGT 2 cut(s) 300, 598
TasI AATT 3 cut(s) 38, 130, 554
TfiI GAWTC 3 cut(s) 568, 604, 634
TscAI CASTG 3 cut(s) 224, 357, 442
TseI GCWGC 9 cut(s) 17, 20, 23, 26, 43, 95, 244, 247, 662
TspDTI ATGAA 4 cut(s) 316, 344, 569, 617
TspRI CASTG 3 cut(s) 224, 357, 442
VpaK11BI GGWCC 3 cut(s) 192, 347, 538
XapI RAATTY 1 cut(s) 130
XspI CTAG 3 cut(s) 90, 99, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.