Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002722

Physical Location & Seq

Genomic Coordinates Forward (+)

38286640 .. 38288582

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G456700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGTTCGCATTAACAAAGCCTATGATCTTAATCACTGGCTTTTGGTGCTATTTTTCTTAGCACAACTATGTATTTTTGTGTCATCTTCTGACCCCTCAGAAATCCAAACCCTATTGAAATTCAAGTCCTTTTTGTCCAATGACACAGCTCTAGACAACTGGAACAACTCTACCAACCCCTGCAATGGCACCACAAACATTTGGGCAGGCTTGTACTGTGACAAAAATGGCAATGTGTACGGGTTGAAGTTGCAGAACATGGGTCTCATGGGCATAATTGATATCGACACCCTTTCGGGTTTGTCTGCCCTTCGAAGCATAAGCATCATGAACAACAACTTTGAAGGCCCACTGCCTAGTGCGAACAAGATTGGTGCACTCATAGGAGTTTACTTGTCCAACAATCAATTCACTGGTGAAATTCCAGAAATTGCTTTTGAGGGCATGAATCAATTGAAGAATATTTATTTGGATGGAAATGAATTCTCCGGGGAAATACCAAGTTCTTTGGCTGCATTGCCTAAACTTACAGTATTGGATCTCCAGGGAAACCAATTCAGTGGGGAGATACCAAATTTCCCACAAGACCCAAATGGATGGAAGCATTTCAATGTATCAAACAACCAGCTCGAGGGTCCTATTCCGGCAAGCCTGAGCAATTTAGATGCAAGCGCCTTCGTGGGAAACAAAGGGTTGTGCGGAAAGCCACTTACCCCTTGCAAATCCTCAATGAAAACCACAAAACTTAAAAATTCCCTCGATCAGTTTGAGCATTATGCCATGACAACATTATACCTATCAGAAAAACAACTACTACATATAATTATGAAAACACCAAACCAGGACCCCAGGTCAACGATTCAGTTTAGACTTCTATCAGCCTGTGTAGGTTTTGGACCAACTTCAGTCCTTTTTTTTCTTCTTCTGGACATCAAAACTTCAGTCCTTATTTTCAACCCGCAATTCTGTGCAAATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

327

Amino Acids

35.92

Weight (kDa)

5.6

Isoelectric Point (pI)

24.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50610 AT3G20190 AT3G20190
fragaria_vesca	FvH4_2g36521 FvH4_2g36530 FvH4_6g36540
malus_domestica	MD08G1125100.v1.1 MD08G1125200.v1.1 MD09G1167500.v1.1 MD15G1104700.v1.1 MD17G1160800.v1.1
prunus_persica	Prupe.1G456700_v2.0.a1 Prupe.1G456800_v2.0.a1 Prupe.3G025500_v2.0.a1
pyrus_communis	pycom08g10400 pycom09g08500 pycom15g09530 pycom17g15310
rosa_chinensis	RchiOBHm_Chr2g0149011 RchiOBHm_Chr6g0305321 RchiOBHm_Chr6g0305341
rosa_laevigata	RLG00000010898 RLG00000010899 RLG00000020362
rosa_multiflora	Rmu_sc0007360.1_g000007 Rmu_ssc0000148.1_g000003
rosa_roxburghii	Rroxscaffold_7G00162890 Rroxscaffold_7G00162900
rosa_rugosa	Rorug02G0408600 Rorug06G0339600 Rorug06G0339700.1
rosa_samantha	Rh2AG467900 Rh2BG480700 Rh2CG454300 Rh2DG489600 Rh6AG451200 Rh6AG451400
rosa_wichuraiana	Rw2G038120 Rw6G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AciI	CCGC	2 cut(s)	699, 959
AclWI	GGATC	1 cut(s)	546
AcsI	RAATTY	5 cut(s)	119, 420, 482, 574, 751
AcuI	CTGAAG	2 cut(s)	888, 924
AfaI	GTAC	2 cut(s)	215, 239
AfiI	CCNNNNNNNGG	2 cut(s)	185, 631
AgsI	TTSAA	7 cut(s)	118, 124, 247, 344, 457, 610, 955
AhdI	GACNNNNNGTC	1 cut(s)	850
AjnI	CCWGG	3 cut(s)	543, 840, 848
AjuI	GAANNNNNNNTTGG	4 cut(s)	392, 424, 452, 484
AluBI	AGCT	2 cut(s)	149, 628
AluI	AGCT	2 cut(s)	149, 628
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	269
Alw44I	GTGCAC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	546
Ama87I	CYCGRG	1 cut(s)	629
AoxI	GGCC	1 cut(s)	346
ApaLI	GTGCAC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	5 cut(s)	119, 420, 482, 574, 751
ArsI	GACNNNNNNTTYG	2 cut(s)	927, 959
Asp700I	GAANNNNTTC	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	674
AspS9I	GGNCC	4 cut(s)	347, 635, 844, 896
AsuC2I	CCSGG	1 cut(s)	490
AsuHPI	GGTGA	1 cut(s)	428
AsuII	TTCGAA	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	629
AvaII	GGWCC	3 cut(s)	635, 844, 896
BaeGI	GKGCMC	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	2 cut(s)	467, 591
BciT130I	CCWGG	3 cut(s)	545, 842, 850
BcnI	CCSGG	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	152, 357
BfoI	RGCGCY	1 cut(s)	675
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
Bme1390I	CCNGG	4 cut(s)	490, 545, 842, 850
Bme18I	GGWCC	3 cut(s)	635, 844, 896
BmeRI	GACNNNNNGTC	1 cut(s)	850
BmeT110I	CYCGRG	1 cut(s)	629
BmgT120I	GGNCC	4 cut(s)	347, 635, 844, 896
BmiI	GGNNCC	3 cut(s)	190, 636, 846
BmrFI	CCNGG	4 cut(s)	490, 545, 842, 850
BmsI	GCATC	2 cut(s)	333, 655
BpmI	CTGGAG	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	653
Bpu14I	TTCGAA	1 cut(s)	313
BpuMI	CCSGG	1 cut(s)	490
BsaBI	GATNNNNATC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	489, 544, 848
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 631
Bse1I	ACTGG	3 cut(s)	41, 164, 418
Bse3DI	GCAATG	3 cut(s)	190, 238, 515
Bse8I	GATNNNNATC	1 cut(s)	30
BseBI	CCWGG	3 cut(s)	545, 842, 850
BseDI	CCNNGG	3 cut(s)	489, 544, 848
BseGI	GGATG	2 cut(s)	478, 602
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	185, 631
BseMI	GCAATG	3 cut(s)	190, 238, 515
BseMII	CTCAG	2 cut(s)	111, 644
BseNI	ACTGG	3 cut(s)	41, 164, 418
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	1 cut(s)	499
BshFI	GGCC	1 cut(s)	348
BshNI	GGYRCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	379
BsiHKCI	CYCGRG	1 cut(s)	629
BsiSI	CCGG	2 cut(s)	489, 644
BslI	CCNNNNNNNGG	2 cut(s)	185, 631
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	348
Bso31I	GGTCTC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	629
Bsp119I	TTCGAA	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	3 cut(s)	25, 538, 760
BspACI	CCGC	2 cut(s)	699, 959
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	2 cut(s)	110, 645
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	3 cut(s)	190, 636, 846
BspPI	GGATC	1 cut(s)	546
BspT104I	TTCGAA	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	269
BsrDI	GCAATG	3 cut(s)	190, 238, 515
BsrI	ACTGG	3 cut(s)	41, 164, 418
BssECI	CCNNGG	3 cut(s)	489, 544, 848
BssMI	GATC	3 cut(s)	25, 538, 760
Bst2UI	CCWGG	3 cut(s)	545, 842, 850
Bst4CI	ACNGT	2 cut(s)	218, 532
BstBI	TTCGAA	1 cut(s)	313
BstC8I	GCNNGC	3 cut(s)	208, 649, 670
BstDEI	CTNAG	3 cut(s)	58, 97, 653
BstF5I	GGATG	2 cut(s)	478, 602
BstH2I	RGCGCY	1 cut(s)	675
BstHHI	GCGC	1 cut(s)	674
BstKTI	GATC	3 cut(s)	28, 541, 763
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	3 cut(s)	25, 538, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	3 cut(s)	545, 842, 850
BstSCI	CCNGG	4 cut(s)	488, 543, 840, 848
BstSLI	GKGCMC	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	499
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	2 cut(s)	560, 597
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	478, 602
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	4 cut(s)	34, 350, 411, 565
Cac8I	GCNNGC	3 cut(s)	208, 649, 670
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	1 cut(s)	674
Cfr13I	GGNCC	4 cut(s)	347, 635, 844, 896
Csp6I	GTAC	2 cut(s)	214, 238
CviAII	CATG	5 cut(s)	259, 268, 328, 445, 781
CviQI	GTAC	2 cut(s)	214, 238
DdeI	CTNAG	3 cut(s)	58, 97, 653
DpnI	GATC	3 cut(s)	27, 540, 762
DpnII	GATC	3 cut(s)	25, 538, 760
DriI	GACNNNNNGTC	1 cut(s)	850
Eam1105I	GACNNNNNGTC	1 cut(s)	850
Eco31I	GGTCTC	1 cut(s)	269
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	3 cut(s)	635, 844, 896
Eco57I	CTGAAG	2 cut(s)	888, 924
Eco88I	CYCGRG	1 cut(s)	629
EcoO109I	RGGNCCY	2 cut(s)	635, 844
EcoRI	GAATTC	1 cut(s)	482
EcoRII	CCWGG	3 cut(s)	543, 840, 848
EcoRV	GATATC	1 cut(s)	283
FaeI	CATG	5 cut(s)	262, 271, 331, 448, 784
FatI	CATG	5 cut(s)	258, 267, 327, 444, 780
FauI	CCCGC	1 cut(s)	966
Fnu4HI	GCNGC	1 cut(s)	513
FokI	GGATG	2 cut(s)	485, 609
Fsp4HI	GCNGC	1 cut(s)	513
FspBI	CTAG	2 cut(s)	152, 357
GlaI	GCGC	1 cut(s)	673
GluI	GCNGC	1 cut(s)	513
GsuI	CTGGAG	1 cut(s)	527
HaeII	RGCGCY	1 cut(s)	675
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	2 cut(s)	489, 644
HhaI	GCGC	1 cut(s)	674
Hin1II	CATG	5 cut(s)	262, 271, 331, 448, 784
Hin6I	GCGC	1 cut(s)	672
HinP1I	GCGC	1 cut(s)	672
HincII	GTYRAC	1 cut(s)	855
HindII	GTYRAC	1 cut(s)	855
HinfI	GANTC	2 cut(s)	448, 859
HpaII	CCGG	2 cut(s)	489, 644
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	4 cut(s)	238, 377, 391, 855
Hpy188I	TCNGA	3 cut(s)	91, 100, 802
Hpy188III	TCNNGA	4 cut(s)	152, 328, 425, 926
Hpy8I	GTNNAC	4 cut(s)	238, 377, 391, 855
HpyAV	CCTTC	3 cut(s)	320, 338, 685
HpyCH4III	ACNGT	2 cut(s)	218, 532
HpyCH4V	TGCA	7 cut(s)	183, 253, 377, 515, 668, 720, 971
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	3 cut(s)	58, 97, 653
Hsp92II	CATG	5 cut(s)	262, 271, 331, 448, 784
HspAI	GCGC	1 cut(s)	672
Kzo9I	GATC	3 cut(s)	25, 538, 760
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	2 cut(s)	333, 655
MaeI	CTAG	2 cut(s)	152, 357
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	3 cut(s)	27, 540, 762
MboI	GATC	3 cut(s)	25, 538, 760
MboII	GAAGA	4 cut(s)	78, 469, 911, 914
MfeI	CAATTG	1 cut(s)	452
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	379
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	5 cut(s)	106, 433, 625, 736, 767
MroXI	GAANNNNTTC	1 cut(s)	605
MseI	TTAA	3 cut(s)	12, 30, 747
MslI	CAYNNNNRTG	2 cut(s)	67, 609
MspI	CCGG	2 cut(s)	489, 644
MspR9I	CCNGG	4 cut(s)	490, 545, 842, 850
MunI	CAATTG	1 cut(s)	452
MvaI	CCWGG	3 cut(s)	545, 842, 850
MwoI	GCNNNNNNNGC	1 cut(s)	46
NciI	CCSGG	1 cut(s)	490
NdeII	GATC	3 cut(s)	25, 538, 760
NlaIII	CATG	5 cut(s)	262, 271, 331, 448, 784
NlaIV	GGNNCC	3 cut(s)	190, 636, 846
NmuCI	GTSAC	1 cut(s)	218
NspV	TTCGAA	1 cut(s)	313
PaeR7I	CTCGAG	1 cut(s)	629
PagI	TCATGA	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	605
PfeI	GAWTC	2 cut(s)	448, 859
PkrI	GCNGC	1 cut(s)	514
PpuMI	RGGWCCY	2 cut(s)	635, 844
Psp5II	RGGWCCY	2 cut(s)	635, 844
Psp6I	CCWGG	3 cut(s)	543, 840, 848
PspGI	CCWGG	3 cut(s)	543, 840, 848
PspN4I	GGNNCC	3 cut(s)	190, 636, 846
PspPI	GGNCC	4 cut(s)	347, 635, 844, 896
PspPPI	RGGWCCY	2 cut(s)	635, 844
PspXI	VCTCGAGB	1 cut(s)	629
PsuI	RGATCY	1 cut(s)	538
RsaI	GTAC	2 cut(s)	215, 239
RsaNI	GTAC	2 cut(s)	214, 238
RseI	CAYNNNNRTG	2 cut(s)	67, 609
SaqAI	TTAA	3 cut(s)	12, 30, 747
SatI	GCNGC	1 cut(s)	513
Sau3AI	GATC	3 cut(s)	25, 538, 760
Sau96I	GGNCC	4 cut(s)	347, 635, 844, 896
ScrFI	CCNGG	4 cut(s)	490, 545, 842, 850
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	5 cut(s)	151, 630, 798, 854, 892
SfaNI	GCATC	2 cut(s)	333, 655
Sfr274I	CTCGAG	1 cut(s)	629
SfuI	TTCGAA	1 cut(s)	313
SinI	GGWCC	3 cut(s)	635, 844, 896
SlaI	CTCGAG	1 cut(s)	629
SmiMI	CAYNNNNRTG	2 cut(s)	67, 609
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
SsiI	CCGC	2 cut(s)	699, 959
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	2 cut(s)	152, 357
StyD4I	CCNGG	4 cut(s)	488, 543, 840, 848
TaaI	ACNGT	2 cut(s)	218, 532
TaqI	TCGA	4 cut(s)	285, 313, 630, 759
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	2 cut(s)	448, 859
Tru1I	TTAA	3 cut(s)	12, 30, 747
Tru9I	TTAA	3 cut(s)	12, 30, 747
TscAI	CASTG	4 cut(s)	41, 357, 418, 565
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	5 cut(s)	344, 461, 495, 746, 842
TspRI	CASTG	4 cut(s)	41, 357, 418, 565
VneI	GTGCAC	1 cut(s)	375
VpaK11BI	GGWCC	3 cut(s)	635, 844, 896
XapI	RAATTY	5 cut(s)	119, 420, 482, 574, 751
XbaI	TCTAGA	1 cut(s)	151
XhoI	CTCGAG	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	605
XspI	CTAG	2 cut(s)	152, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.