Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002722

Physical Location & Seq

Genomic Coordinates Forward (+)

11720135 .. 11720911

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1125100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCACATATTCACAAAGCATCATATGATCACCATCACTGGCTTTTCATGCTAATTTTCTTAGTAGTATCATACGTTGCTTCGTCTTCAGATCCGACCGAGCCAGCCACCCTCCTCAAGTTCAAGTCATTTCTATCCAACGACAGTGCTTTGGACAACTGGACTAACGCCACAGCTCCCTGCAACGGTACACACAACCTCTGGGCAGGTTTGCTTTGTGATGGCGACGGCAATGTGTTCGGGTTGGCTTTAACAAACATGGGTCTTCTGGGGATAATCGATATAGACACACTTATGGATTTGTCTGCCCTGAAAACCGTAAGCTTCATGAACAATAGCTTTGAAGGTCCTATCCCTAGTGTGAACAAACTTAGTTCACTTACATCAGTTTACTTGTCGTACAATCAATTCAATGGTGAAATCCCAGATAATTTTTTTGTTGGCATGAATTCCTTGAAGAAAATTTATCTGGATGGGAATGAATTCATGGGTAAAATACCAAACTCGCTGGCTGCATTGACTAAGATTGTGGAAATGGATATTCGGGGAAACCAATTCAGTGGGAAACTACCAAATTTTCCACAAAATCGAAATGCATGGAAGACTATGAATGTGTCATACAATCGGCTCGAGGGTCCTATACCGGCAAGCCTAAGCAATTTCGATGCAAGCGTTTTTGTGGGTAAGCAAATTAATAACCTGCGGTTAGTGCTTCGTTTAGTAATACTTTTCTTTTTAATGTTGAAAAAATTCTCAAGTTTAAATGCACCCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

259

Amino Acids

28.6

Weight (kDa)

7.0

Isoelectric Point (pI)

17.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 74	1e-05	Leucine rich repeat N-terminal domain
LRR_8	PF13855	126 - 186	1.4e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50610 AT3G20190 AT3G20190
fragaria_vesca	FvH4_2g36521 FvH4_2g36530 FvH4_6g36540
malus_domestica	MD08G1125100.v1.1 MD08G1125200.v1.1 MD09G1167500.v1.1 MD15G1104700.v1.1 MD17G1160800.v1.1
prunus_persica	Prupe.1G456700_v2.0.a1 Prupe.1G456800_v2.0.a1 Prupe.3G025500_v2.0.a1
pyrus_communis	pycom08g10400 pycom09g08500 pycom15g09530 pycom17g15310
rosa_chinensis	RchiOBHm_Chr2g0149011 RchiOBHm_Chr6g0305321 RchiOBHm_Chr6g0305341
rosa_laevigata	RLG00000010898 RLG00000010899 RLG00000020362
rosa_multiflora	Rmu_sc0007360.1_g000007 Rmu_ssc0000148.1_g000003
rosa_roxburghii	Rroxscaffold_7G00162890 Rroxscaffold_7G00162900
rosa_rugosa	Rorug02G0408600 Rorug06G0339600 Rorug06G0339700.1
rosa_samantha	Rh2AG467900 Rh2BG480700 Rh2CG454300 Rh2DG489600 Rh6AG451200 Rh6AG451400
rosa_wichuraiana	Rw2G038120 Rw6G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	197, 708
AciI	CCGC	1 cut(s)	703
AclWI	GGATC	1 cut(s)	86
AcsI	RAATTY	5 cut(s)	448, 462, 482, 574, 749
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	2 cut(s)	190, 401
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	5 cut(s)	124, 344, 412, 457, 745
AluBI	AGCT	3 cut(s)	176, 324, 339
AluI	AGCT	3 cut(s)	176, 324, 339
AlwI	GGATC	1 cut(s)	86
Ama87I	CYCGRG	1 cut(s)	629
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	5 cut(s)	448, 462, 482, 574, 749
AseI	ATTAAT	1 cut(s)	693
Asp700I	GAANNNNTTC	2 cut(s)	482, 749
AspS9I	GGNCC	2 cut(s)	347, 635
AsuHPI	GGTGA	2 cut(s)	23, 428
AvaI	CYCGRG	1 cut(s)	629
AvaII	GGWCC	2 cut(s)	347, 635
BbsI	GAAGAC	3 cut(s)	78, 257, 608
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	3 cut(s)	42, 215, 467
BceAI	ACGGC	1 cut(s)	244
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BclI	TGATCA	1 cut(s)	28
BfaI	CTAG	1 cut(s)	357
BfuAI	ACCTGC	2 cut(s)	197, 708
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
Bme18I	GGWCC	2 cut(s)	347, 635
BmeT110I	CYCGRG	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	347, 635
BmiI	GGNNCC	1 cut(s)	636
BmsI	GCATC	2 cut(s)	29, 655
BpiI	GAAGAC	3 cut(s)	78, 257, 608
Bpu10I	CCTNAGC	1 cut(s)	653
BpuEI	CTTGAG	2 cut(s)	101, 739
Bsa29I	ATCGAT	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse118I	RCCGGY	1 cut(s)	643
Bse1I	ACTGG	2 cut(s)	44, 164
Bse3DI	GCAATG	1 cut(s)	238
Bse8I	GATNNNNATC	1 cut(s)	33
BseCI	ATCGAT	1 cut(s)	279
BseGI	GGATG	1 cut(s)	478
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	238
BseNI	ACTGG	2 cut(s)	44, 164
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	499
Bsh1285I	CGRYCG	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	279
BsiEI	CGRYCG	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	629
BsiSI	CCGG	1 cut(s)	644
BslI	CCNNNNNNNGG	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	629
Bsp143I	GATC	2 cut(s)	28, 91
BspACI	CCGC	1 cut(s)	703
BspDI	ATCGAT	1 cut(s)	279
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	636
BspMI	ACCTGC	2 cut(s)	197, 708
BspPI	GGATC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	643
BsrI	ACTGG	2 cut(s)	44, 164
BssAI	RCCGGY	1 cut(s)	643
BssMI	GATC	2 cut(s)	28, 91
Bst4CI	ACNGT	3 cut(s)	146, 188, 319
BstC8I	GCNNGC	4 cut(s)	105, 510, 649, 670
BstDEI	CTNAG	4 cut(s)	61, 371, 522, 653
BstF5I	GGATG	1 cut(s)	478
BstKTI	GATC	2 cut(s)	31, 94
BstMBI	GATC	2 cut(s)	28, 91
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 709
BstV1I	GCAGC	1 cut(s)	499
BstV2I	GAAGAC	3 cut(s)	78, 257, 608
BstX2I	RGATCY	1 cut(s)	91
BstXI	CCANNNNNNTGG	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	279
BsuTUI	ATCGAT	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	3 cut(s)	37, 151, 565
BveI	ACCTGC	2 cut(s)	197, 708
Cac8I	GCNNGC	4 cut(s)	105, 510, 649, 670
CciI	TCATGA	1 cut(s)	327
Cfr10I	RCCGGY	1 cut(s)	643
Cfr13I	GGNCC	2 cut(s)	347, 635
ClaI	ATCGAT	1 cut(s)	279
Csp6I	GTAC	2 cut(s)	189, 400
CviAII	CATG	6 cut(s)	49, 259, 328, 445, 487, 597
CviQI	GTAC	2 cut(s)	189, 400
DdeI	CTNAG	4 cut(s)	61, 371, 522, 653
DpnI	GATC	2 cut(s)	30, 93
DpnII	GATC	2 cut(s)	28, 91
DraI	TTTAAA	1 cut(s)	762
Eco47I	GGWCC	2 cut(s)	347, 635
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	629
EcoO109I	RGGNCCY	2 cut(s)	347, 635
EcoRI	GAATTC	2 cut(s)	448, 482
EcoT22I	ATGCAT	1 cut(s)	598
FaeI	CATG	6 cut(s)	52, 262, 331, 448, 490, 600
FatI	CATG	6 cut(s)	48, 258, 327, 444, 486, 596
FauNDI	CATATG	1 cut(s)	25
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	513
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	1 cut(s)	513
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	1 cut(s)	513
HapII	CCGG	1 cut(s)	644
Hin1II	CATG	6 cut(s)	52, 262, 331, 448, 490, 600
HindIII	AAGCTT	1 cut(s)	322
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	2 cut(s)	23, 428
Hpy166II	GTNNAC	4 cut(s)	191, 364, 377, 391
Hpy188I	TCNGA	2 cut(s)	91, 96
Hpy188III	TCNNGA	2 cut(s)	328, 470
Hpy8I	GTNNAC	4 cut(s)	191, 364, 377, 391
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	338
HpyCH4III	ACNGT	3 cut(s)	146, 188, 319
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	5 cut(s)	183, 515, 596, 668, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 709
HpyF3I	CTNAG	4 cut(s)	61, 371, 522, 653
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	6 cut(s)	52, 262, 331, 448, 490, 600
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	28, 91
LmnI	GCTCC	1 cut(s)	181
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	2 cut(s)	29, 655
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	75
MalI	GATC	2 cut(s)	30, 93
MboI	GATC	2 cut(s)	28, 91
MboII	GAAGA	4 cut(s)	78, 257, 469, 613
MflI	RGATCY	1 cut(s)	91
MmeI	TCCRAC	2 cut(s)	119, 162
MnlI	CCTC	4 cut(s)	122, 125, 209, 625
Mph1103I	ATGCAT	1 cut(s)	598
MroXI	GAANNNNTTC	2 cut(s)	482, 749
MseI	TTAA	4 cut(s)	251, 693, 737, 761
MslI	CAYNNNNRTG	1 cut(s)	293
MspI	CCGG	1 cut(s)	644
MwoI	GCNNNNNNNGC	2 cut(s)	49, 709
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	2 cut(s)	28, 91
NlaIII	CATG	6 cut(s)	52, 262, 331, 448, 490, 600
NlaIV	GGNNCC	1 cut(s)	636
NsiI	ATGCAT	1 cut(s)	598
PaeR7I	CTCGAG	1 cut(s)	629
PagI	TCATGA	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	669
PdmI	GAANNNNTTC	2 cut(s)	482, 749
PkrI	GCNGC	1 cut(s)	514
PpuMI	RGGWCCY	2 cut(s)	347, 635
PshBI	ATTAAT	1 cut(s)	693
Psp5II	RGGWCCY	2 cut(s)	347, 635
PspN4I	GGNNCC	1 cut(s)	636
PspPI	GGNCC	2 cut(s)	347, 635
PspPPI	RGGWCCY	2 cut(s)	347, 635
PspXI	VCTCGAGB	1 cut(s)	629
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	2 cut(s)	190, 401
RsaNI	GTAC	2 cut(s)	189, 400
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	4 cut(s)	251, 693, 737, 761
SatI	GCNGC	1 cut(s)	513
Sau3AI	GATC	2 cut(s)	28, 91
Sau96I	GGNCC	2 cut(s)	347, 635
SetI	ASST	8 cut(s)	78, 178, 201, 211, 326, 341, 349, 702
SfaNI	GCATC	2 cut(s)	29, 655
Sfr274I	CTCGAG	1 cut(s)	629
SinI	GGWCC	2 cut(s)	347, 635
SlaI	CTCGAG	1 cut(s)	629
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	3 cut(s)	116, 629, 754
SmoI	CTYRAG	3 cut(s)	116, 629, 754
SsiI	CCGC	1 cut(s)	703
SspMI	CTAG	1 cut(s)	357
TaaI	ACNGT	3 cut(s)	146, 188, 319
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	4 cut(s)	279, 589, 630, 663
TaqII	GACCGA	1 cut(s)	113
Tru1I	TTAA	4 cut(s)	251, 693, 737, 761
Tru9I	TTAA	4 cut(s)	251, 693, 737, 761
TscAI	CASTG	3 cut(s)	44, 151, 565
TseI	GCWGC	1 cut(s)	512
TspDTI	ATGAA	7 cut(s)	37, 316, 344, 461, 475, 495, 623
TspRI	CASTG	3 cut(s)	44, 151, 565
VpaK11BI	GGWCC	2 cut(s)	347, 635
VspI	ATTAAT	1 cut(s)	693
XapI	RAATTY	5 cut(s)	448, 462, 482, 574, 749
XhoI	CTCGAG	1 cut(s)	629
XmnI	GAANNNNTTC	2 cut(s)	482, 749
XspI	CTAG	1 cut(s)	357
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.