Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002722

Physical Location & Seq

Genomic Coordinates Forward (+)

26727342 .. 26728309

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g36521.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTCGTAACAAATCAGCAGCACACAATCAATGGCTGCTATTTCTGTTAGCAATAGTATCATCATCATGTGTTATCTCATCTTCTAGTGCTGCTACTGATGAAGGTGCCACACTCATGAACTTCAAGAATTCTCTATCCGATACCGCGGGGTTAGATAACTGGAATGTTACCTCTAGAAATCCCTGCAACAATTCCCAGCCCCTTTGGGCGGGTGTGCTTTGCAACAGCGGAAGCGTATACGGGCTGCAGCTGCAGAGCATGGGACTAACTGGCCTGATTGACATCGACACGCTCTCGGAGTTGCCGGCGCTCAAGACCATAAACTTGATGAACAACGGCTTTGAAGGTCCACTACCCAATGTGAAGAGACTGTCACTCATTAGTGTCTACTTGTCCCAGAACCGATTCTCTGGTGATATCCCTGATGATGCTTTCAGTGGCATGAGTGGTACCTTGAAGAAGGTTTACTTGGCCAATAATGGATTTACGGGGAAGATACCAAGTTCTTTGGTTGCTTTGCCTAAGCTCGTGGAGTTGGATCTTGGGGATAACCAATTTACAGGGGAGATTCCAGATTTCCAACCAAGGAACTGGAATACGATGAATCTAGCAAACAACAGACTGGAGGGTCAGATCCCGGCATCACTAAGCAATTTAAATCCGGCCGATTTTGAGGGAAACAGTGGCTTGTGTGGAGAGCCTCTTAGCCCATGCCAAATGGTAAAGAAGAAAGGAAGCAGTGACGGTCAAAGAATTGGAGCAGTGAATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

259

Amino Acids

27.54

Weight (kDa)

5.18

Isoelectric Point (pI)

25.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	33 - 76	1.3e-07	Leucine rich repeat N-terminal domain
LRR_8	PF13855	127 - 187	4.2e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50610 AT3G20190 AT3G20190
fragaria_vesca	FvH4_2g36521 FvH4_2g36530 FvH4_6g36540
malus_domestica	MD08G1125100.v1.1 MD08G1125200.v1.1 MD09G1167500.v1.1 MD15G1104700.v1.1 MD17G1160800.v1.1
prunus_persica	Prupe.1G456700_v2.0.a1 Prupe.1G456800_v2.0.a1 Prupe.3G025500_v2.0.a1
pyrus_communis	pycom08g10400 pycom09g08500 pycom15g09530 pycom17g15310
rosa_chinensis	RchiOBHm_Chr2g0149011 RchiOBHm_Chr6g0305321 RchiOBHm_Chr6g0305341
rosa_laevigata	RLG00000010898 RLG00000010899 RLG00000020362
rosa_multiflora	Rmu_sc0007360.1_g000007 Rmu_ssc0000148.1_g000003
rosa_roxburghii	Rroxscaffold_7G00162890 Rroxscaffold_7G00162900
rosa_rugosa	Rorug02G0408600 Rorug06G0339600 Rorug06G0339700.1
rosa_samantha	Rh2AG467900 Rh2BG480700 Rh2CG454300 Rh2DG489600 Rh6AG451200 Rh6AG451400
rosa_wichuraiana	Rw2G038120 Rw6G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	630
Acc65I	GGTACC	1 cut(s)	452
AccB1I	GGYRCC	2 cut(s)	107, 452
AccI	GTMKAC	2 cut(s)	240, 390
AccII	CGCG	1 cut(s)	149
AciI	CCGC	4 cut(s)	147, 149, 212, 231
AclWI	GGATC	2 cut(s)	549, 631
AcoI	YGGCCR	2 cut(s)	474, 666
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	127, 347, 460
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AluBI	AGCT	2 cut(s)	253, 529
AluI	AGCT	2 cut(s)	253, 529
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	2 cut(s)	549, 631
AoxI	GGCC	3 cut(s)	274, 474, 666
ApeKI	GCWGC	6 cut(s)	20, 37, 92, 247, 250, 253
ApoI	RAATTY	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	407
Asp718I	GGTACC	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	641
AsuHPI	GGTGA	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	476
BanI	GGYRCC	2 cut(s)	107, 452
BarI	GAAGNNNNNNTAC	4 cut(s)	339, 371, 452, 484
BauI	CACGAG	1 cut(s)	530
BbvI	GCAGC	6 cut(s)	24, 32, 79, 234, 240, 262
BceAI	ACGGC	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	641
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	3 cut(s)	87, 177, 611
BfmI	CTRYAG	2 cut(s)	248, 254
BfoI	RGCGCY	1 cut(s)	314
BisI	GCNGC	6 cut(s)	21, 38, 93, 248, 251, 254
BlsI	GCNGC	6 cut(s)	22, 39, 94, 249, 252, 255
Bme1390I	CCNGG	1 cut(s)	641
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	109, 454
BmrFI	CCNGG	1 cut(s)	641
BmsI	GCATC	2 cut(s)	421, 653
BpmI	CTGGAG	1 cut(s)	647
Bpu10I	CCTNAGC	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	641
BsaBI	GATNNNNATC	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	147, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	4 cut(s)	167, 277, 599, 630
Bse8I	GATNNNNATC	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	147, 587
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseNI	ACTGG	4 cut(s)	167, 277, 599, 630
BseX3I	CGGCCG	1 cut(s)	666
BseXI	GCAGC	6 cut(s)	24, 32, 79, 234, 240, 262
BseYI	CCCAGC	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	669
BshFI	GGCC	3 cut(s)	276, 476, 668
BshNI	GGYRCC	2 cut(s)	107, 452
BsiEI	CGRYCG	1 cut(s)	669
BsiSI	CCGG	3 cut(s)	308, 641, 665
BslFI	GGGAC	2 cut(s)	279, 382
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	2 cut(s)	279, 382
BsnI	GGCC	3 cut(s)	276, 476, 668
Bsp143I	GATC	2 cut(s)	541, 636
BspACI	CCGC	4 cut(s)	147, 149, 212, 231
BspANI	GGCC	3 cut(s)	276, 476, 668
BspFNI	CGCG	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	109, 454
BspMAI	CTGCAG	2 cut(s)	252, 258
BspPI	GGATC	2 cut(s)	549, 631
BspT107I	GGYRCC	2 cut(s)	107, 452
BsrFI	RCCGGY	1 cut(s)	307
BsrI	ACTGG	4 cut(s)	167, 277, 599, 630
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	147, 587
BssMI	GATC	2 cut(s)	541, 636
BssNAI	GTATAC	1 cut(s)	241
BssSI	CACGAG	1 cut(s)	530
BssT1I	CCWWGG	1 cut(s)	587
Bst1107I	GTATAC	1 cut(s)	241
Bst2BI	CACGAG	1 cut(s)	530
Bst4CI	ACNGT	3 cut(s)	375, 686, 749
Bst6I	CTCTTC	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	3 cut(s)	525, 650, 707
BstDSI	CCRYGG	1 cut(s)	147
BstFNI	CGCG	1 cut(s)	149
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	2 cut(s)	544, 639
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	2 cut(s)	541, 636
BstMCI	CGRYCG	1 cut(s)	669
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	639
BstSFI	CTRYAG	2 cut(s)	248, 254
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	6 cut(s)	24, 32, 79, 234, 240, 262
BstX2I	RGATCY	2 cut(s)	541, 636
BstXI	CCANNNNNNTGG	1 cut(s)	594
BstYI	RGATCY	2 cut(s)	541, 636
BstZ17I	GTATAC	1 cut(s)	241
BstZI	CGGCCG	1 cut(s)	666
BsuRI	GGCC	3 cut(s)	276, 476, 668
BtgI	CCRYGG	1 cut(s)	147
BtsI	GCAGTG	2 cut(s)	748, 771
BtsIMutI	CAGTG	4 cut(s)	445, 691, 748, 771
Cac8I	GCNNGC	1 cut(s)	309
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	350
Cfr42I	CCGCGG	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	5 cut(s)	69, 118, 262, 445, 714
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	3 cut(s)	525, 650, 707
DpnI	GATC	2 cut(s)	543, 638
DpnII	GATC	2 cut(s)	541, 636
DraI	TTTAAA	1 cut(s)	660
DrdI	GACNNNNNNGTC	1 cut(s)	630
DseDI	GACNNNNNNGTC	1 cut(s)	630
EaeI	YGGCCR	2 cut(s)	474, 666
EagI	CGGCCG	1 cut(s)	666
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
EclXI	CGGCCG	1 cut(s)	666
Eco130I	CCWWGG	1 cut(s)	587
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	350
Eco52I	CGGCCG	1 cut(s)	666
EcoRI	GAATTC	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	587
ErhI	CCWWGG	1 cut(s)	587
FaeI	CATG	5 cut(s)	72, 121, 265, 448, 717
FaiI	YATR	7 cut(s)	70, 119, 241, 263, 323, 446, 715
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	2 cut(s)	279, 382
FatI	CATG	5 cut(s)	68, 117, 261, 444, 713
FauI	CCCGC	2 cut(s)	142, 205
FblI	GTMKAC	2 cut(s)	240, 390
Fnu4HI	GCNGC	6 cut(s)	21, 38, 93, 248, 251, 254
Fsp4HI	GCNGC	6 cut(s)	21, 38, 93, 248, 251, 254
FspBI	CTAG	3 cut(s)	87, 177, 611
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	6 cut(s)	21, 38, 93, 248, 251, 254
GsaI	CCCAGC	1 cut(s)	202
GsuI	CTGGAG	1 cut(s)	647
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	3 cut(s)	276, 476, 668
HapII	CCGG	3 cut(s)	308, 641, 665
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	5 cut(s)	72, 121, 265, 448, 717
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HinfI	GANTC	4 cut(s)	408, 571, 607, 769
HpaII	CCGG	3 cut(s)	308, 641, 665
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	4 cut(s)	241, 353, 391, 469
Hpy188I	TCNGA	3 cut(s)	142, 301, 636
Hpy188III	TCNNGA	5 cut(s)	118, 127, 177, 316, 575
Hpy8I	GTNNAC	4 cut(s)	241, 353, 391, 469
HpyAV	CCTTC	3 cut(s)	98, 341, 457
HpyCH4III	ACNGT	3 cut(s)	375, 686, 749
HpyCH4V	TGCA	4 cut(s)	189, 225, 250, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	3 cut(s)	525, 650, 707
Hsp92II	CATG	5 cut(s)	72, 121, 265, 448, 717
HspAI	GCGC	1 cut(s)	311
KpnI	GGTACC	1 cut(s)	456
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
KspI	CCGCGG	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	541, 636
LmnI	GCTCC	1 cut(s)	761
Lsp1109I	GCAGC	6 cut(s)	24, 32, 79, 234, 240, 262
LweI	GCATC	2 cut(s)	421, 653
MaeI	CTAG	3 cut(s)	87, 177, 611
MaeIII	GTNAC	4 cut(s)	8, 169, 375, 743
MalI	GATC	2 cut(s)	543, 638
MboI	GATC	2 cut(s)	541, 636
MboII	GAAGA	5 cut(s)	75, 379, 472, 508, 742
MflI	RGATCY	2 cut(s)	541, 636
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	5 cut(s)	130, 193, 557, 655, 756
MluNI	TGGCCA	1 cut(s)	476
MmeI	TCCRAC	2 cut(s)	519, 607
MnlI	CCTC	4 cut(s)	184, 622, 670, 714
Mox20I	TGGCCA	1 cut(s)	476
MroNI	GCCGGC	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	476
MseI	TTAA	1 cut(s)	659
MslI	CAYNNNNRTG	2 cut(s)	67, 116
Msp20I	TGGCCA	1 cut(s)	476
MspA1I	CMGCKG	3 cut(s)	149, 231, 253
MspI	CCGG	3 cut(s)	308, 641, 665
MspR9I	CCNGG	1 cut(s)	641
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	253
NaeI	GCCGGC	1 cut(s)	309
NciI	CCSGG	1 cut(s)	641
NdeII	GATC	2 cut(s)	541, 636
NgoMIV	GCCGGC	1 cut(s)	307
NlaIII	CATG	5 cut(s)	72, 121, 265, 448, 717
NlaIV	GGNNCC	2 cut(s)	109, 454
NmuCI	GTSAC	2 cut(s)	375, 743
PagI	TCATGA	1 cut(s)	117
PdiI	GCCGGC	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	4 cut(s)	408, 571, 607, 769
PkrI	GCNGC	6 cut(s)	22, 39, 94, 249, 252, 255
PspFI	CCCAGC	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	109, 454
PspPI	GGNCC	1 cut(s)	350
PstI	CTGCAG	2 cut(s)	252, 258
PsuI	RGATCY	2 cut(s)	541, 636
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
RseI	CAYNNNNRTG	2 cut(s)	67, 116
SacII	CCGCGG	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	6 cut(s)	21, 38, 93, 248, 251, 254
Sau3AI	GATC	2 cut(s)	541, 636
Sau96I	GGNCC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	641
SetI	ASST	7 cut(s)	109, 176, 255, 352, 458, 468, 531
SfaNI	GCATC	2 cut(s)	421, 653
SfcI	CTRYAG	2 cut(s)	248, 254
Sfr303I	CCGCGG	1 cut(s)	150
SgrBI	CCGCGG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	350
SmiI	ATTTAAAT	1 cut(s)	660
SmiMI	CAYNNNNRTG	2 cut(s)	67, 116
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	5 cut(s)	130, 193, 557, 655, 756
SsiI	CCGC	4 cut(s)	147, 149, 212, 231
SspMI	CTAG	3 cut(s)	87, 177, 611
StyD4I	CCNGG	1 cut(s)	639
StyI	CCWWGG	1 cut(s)	587
SwaI	ATTTAAAT	1 cut(s)	660
TaaI	ACNGT	3 cut(s)	375, 686, 749
TaqI	TCGA	1 cut(s)	288
TasI	AATT	5 cut(s)	130, 193, 557, 655, 756
TfiI	GAWTC	4 cut(s)	408, 571, 607, 769
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TscAI	CASTG	4 cut(s)	445, 691, 748, 771
TseFI	GTSAC	2 cut(s)	375, 743
TseI	GCWGC	6 cut(s)	20, 37, 92, 247, 250, 253
Tsp45I	GTSAC	2 cut(s)	375, 743
TspDTI	ATGAA	4 cut(s)	117, 134, 347, 620
TspRI	CASTG	4 cut(s)	445, 691, 748, 771
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	130
XbaI	TCTAGA	1 cut(s)	176
XmiI	GTMKAC	2 cut(s)	240, 390
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	3 cut(s)	87, 177, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.