Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002722

Physical Location & Seq

Genomic Coordinates Reverse (-)

6508829 .. 6510254

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGTAATGGGCGCGCATATGGCTATGACTAGGCTTATGCGCGCACCAAACCCTACCCCAACATTTTTTCTTACCCTCTTTGTTGGTTATGTATCATGCATGGCGGTTTTACCGTTTGTTTCACCAATGGATACAACCACCGATGCCCTTTTGAAGTTCAAGAAAACTTTGCAATTGGGAAACAACACCGAGGCTCTTAGAAATTGGGATCCTAACAAAAACCCGTGTAATGGTAACAAGGCGAATTGGGTTGGCGTGCTTTGCTTTAATGGGAATGTCCGGGGATTGCAGCTCGAAAACTTGGGTTTACAGGGAAAGCTGGATTTGGAGCCTCTCGCTCAGTTGCCTTATTTGAAAACCCTAAGCTTCATGAATAACGTGTTGGATGGTCCATTGCCGGACCTTAAGAAATTTAAAAAGTTAAGGTCTTTGTATTTGTCTTACAATCATTTCTCTGGTGAGATTCCGGACAATGAATTTGAAGGTATGCATTTGTTGAGGAAATTGTATCTTGCAAACAATAAGTTTTCAGGCAAAATCCCTTCTTCCCTTACTACTTTGCTTAGGGTTTTCGATGTGGGTCTTGAGGGGAACAAGTTTAGTGGCCAAATACCTGATTTTAAGCAGAGGGCTTTGAAGAGGTTGAATGTATCTCAAAATGAATTGGAGGGTCCAGTTCCAGAAAGCCTAAAAAAGATCGATCCAAGTAACTTTGCAGGCAATGGAAAGCTATGTGGTTCGCCTCTTCAGGGACCATGCAGCCCCCCTCCTCCTCCTCCTTCTCCACCTGCTCCTCCTCCTACAACTCCTGCCCCACCGCCTGAATGCACGGGGGATTCATGCGGCGCGTCTAAGAAGCCATCAGGTCTAAAAGTAGCCCTACTTGTGGCGAGTCTATTACTTCTACTGGCCCTCATTGCTGCGATTTTAATGTTCCTCAACAAGAGAAAGCAACGATCAGAATTAGACGGGACTGAATCATTGGACAAATCGTCCAATTATACGGCAGCTGCTGCGAGCAGCCAAATGGATGTTAAGTCGGTAGAAACTAACCCACATCCAAAGAGAGCTGACCAGGGAAAGTTGTCGTTTGTGAGGGATGACAGACAGAGGTTTGATTTGCATGACCTTCTCAGAGCCTCGGCTGAAATCTTGGGGAGCGGGAATTTTGGGGCTTCCTACAAGGCTTTGATCGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0008150 GO:0010769 GO:0022603 GO:0022604 GO:0040008 GO:0043900 GO:0045595 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051510 GO:0060284 GO:0065007 GO:0080092 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

401

Amino Acids

43.57

Weight (kDa)

9.24

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50610 AT3G20190 AT3G20190
fragaria_vesca	FvH4_2g36521 FvH4_2g36530 FvH4_6g36540
malus_domestica	MD08G1125100.v1.1 MD08G1125200.v1.1 MD09G1167500.v1.1 MD15G1104700.v1.1 MD17G1160800.v1.1
prunus_persica	Prupe.1G456700_v2.0.a1 Prupe.1G456800_v2.0.a1 Prupe.3G025500_v2.0.a1
pyrus_communis	pycom08g10400 pycom09g08500 pycom15g09530 pycom17g15310
rosa_chinensis	RchiOBHm_Chr2g0149011 RchiOBHm_Chr6g0305321 RchiOBHm_Chr6g0305341
rosa_laevigata	RLG00000010898 RLG00000010899 RLG00000020362
rosa_multiflora	Rmu_sc0007360.1_g000007 Rmu_ssc0000148.1_g000003
rosa_roxburghii	Rroxscaffold_7G00162890 Rroxscaffold_7G00162900
rosa_rugosa	Rorug02G0408600 Rorug06G0339600 Rorug06G0339700.1
rosa_samantha	Rh2AG467900 Rh2BG480700 Rh2CG454300 Rh2DG489600 Rh6AG451200 Rh6AG451400
rosa_wichuraiana	Rw2G038120 Rw6G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	796
Acc36I	ACCTGC	1 cut(s)	796
AccBSI	CCGCTC	1 cut(s)	1161
AccII	CGCG	3 cut(s)	14, 42, 848
AccIII	TCCGGA	1 cut(s)	466
AciI	CCGC	4 cut(s)	104, 818, 843, 1161
AclWI	GGATC	3 cut(s)	203, 216, 695
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	3 cut(s)	410, 476, 1165
AcuI	CTGAAG	1 cut(s)	731
AfiI	CCNNNNNNNGG	3 cut(s)	230, 749, 886
AflII	CTTAAG	1 cut(s)	404
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	6 cut(s)	154, 160, 355, 482, 637, 646
AhdI	GACNNNNNGTC	1 cut(s)	991
AjnI	CCWGG	1 cut(s)	1074
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	6 cut(s)	292, 319, 366, 730, 1010, 1070
AluI	AGCT	6 cut(s)	292, 319, 366, 730, 1010, 1070
AlwI	GGATC	3 cut(s)	203, 216, 695
AlwNI	CAGNNNCTG	1 cut(s)	1013
Aor13HI	TCCGGA	1 cut(s)	466
AoxI	GGCC	2 cut(s)	604, 909
ApeKI	GCWGC	7 cut(s)	289, 759, 920, 1007, 1010, 1013, 1020
ApoI	RAATTY	3 cut(s)	410, 476, 1165
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
AspLEI	GCGC	5 cut(s)	14, 16, 42, 44, 848
AspS9I	GGNCC	5 cut(s)	389, 400, 671, 752, 910
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	2 cut(s)	114, 470
AvaII	GGWCC	4 cut(s)	389, 400, 671, 752
BalI	TGGCCA	1 cut(s)	606
BamHI	GGATCC	1 cut(s)	208
BbvI	GCAGC	7 cut(s)	301, 771, 907, 997, 1000, 1019, 1032
BccI	CCATC	2 cut(s)	380, 868
BceAI	ACGGC	1 cut(s)	1020
BciT130I	CCWGG	1 cut(s)	1076
BciVI	GTATCC	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	281
BfaI	CTAG	1 cut(s)	30
BfrI	CTTAAG	1 cut(s)	404
BfuAI	ACCTGC	1 cut(s)	796
BfuI	GTATCC	1 cut(s)	124
BisI	GCNGC	8 cut(s)	290, 760, 844, 921, 1008, 1011, 1014, 1021
BlsI	GCNGC	8 cut(s)	291, 761, 845, 922, 1009, 1012, 1015, 1022
Bme1390I	CCNGG	2 cut(s)	281, 1076
Bme18I	GGWCC	4 cut(s)	389, 400, 671, 752
BmeRI	GACNNNNNGTC	1 cut(s)	991
BmgT120I	GGNCC	5 cut(s)	389, 400, 671, 752, 910
BmiI	GGNNCC	4 cut(s)	210, 330, 672, 753
BmrFI	CCNGG	2 cut(s)	281, 1076
BmsI	GCATC	2 cut(s)	133, 1186
Bpu10I	CCTNAGC	2 cut(s)	362, 563
BpuEI	CTTGAG	1 cut(s)	605
BpuMI	CCSGG	1 cut(s)	281
Bsa29I	ATCGAT	2 cut(s)	699, 1194
BsaJI	CCNNGG	4 cut(s)	189, 280, 1075, 1140
BsaWI	WCCGGW	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 749, 886
Bse1I	ACTGG	2 cut(s)	674, 912
Bse3DI	GCAATG	3 cut(s)	392, 727, 915
BseAI	TCCGGA	1 cut(s)	466
BseBI	CCWGG	1 cut(s)	1076
BseCI	ATCGAT	2 cut(s)	699, 1194
BseDI	CCNNGG	4 cut(s)	189, 280, 1075, 1140
BseGI	GGATG	4 cut(s)	391, 1036, 1057, 1105
BseLI	CCNNNNNNNGG	3 cut(s)	230, 749, 886
BseMI	GCAATG	3 cut(s)	392, 727, 915
BseMII	CTCAG	2 cut(s)	353, 1147
BseNI	ACTGG	2 cut(s)	674, 912
BsePI	GCGCGC	2 cut(s)	12, 40
BseRI	GAGGAG	5 cut(s)	759, 762, 765, 783, 786
BseXI	GCAGC	7 cut(s)	301, 771, 907, 997, 1000, 1019, 1032
Bsh1236I	CGCG	3 cut(s)	14, 42, 848
BshFI	GGCC	2 cut(s)	606, 911
BshVI	ATCGAT	2 cut(s)	699, 1194
BsiSI	CCGG	3 cut(s)	280, 398, 467
BslFI	GGGAC	2 cut(s)	765, 985
BslI	CCNNNNNNNGG	3 cut(s)	230, 749, 886
BsmFI	GGGAC	2 cut(s)	765, 985
BsmI	GAATGC	1 cut(s)	830
BsnI	GGCC	2 cut(s)	606, 911
Bsp13I	TCCGGA	1 cut(s)	466
Bsp143I	GATC	5 cut(s)	208, 696, 700, 956, 1191
BspACI	CCGC	4 cut(s)	104, 818, 843, 1161
BspANI	GGCC	2 cut(s)	606, 911
BspCNI	CTCAG	2 cut(s)	352, 1146
BspDI	ATCGAT	2 cut(s)	699, 1194
BspEI	TCCGGA	1 cut(s)	466
BspFNI	CGCG	3 cut(s)	14, 42, 848
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	4 cut(s)	210, 330, 672, 753
BspMI	ACCTGC	1 cut(s)	796
BspPI	GGATC	3 cut(s)	203, 216, 695
BspTI	CTTAAG	1 cut(s)	404
BsrBI	CCGCTC	1 cut(s)	1161
BsrDI	GCAATG	3 cut(s)	392, 727, 915
BsrI	ACTGG	2 cut(s)	674, 912
BssECI	CCNNGG	4 cut(s)	189, 280, 1075, 1140
BssHII	GCGCGC	2 cut(s)	12, 40
BssMI	GATC	5 cut(s)	208, 696, 700, 956, 1191
Bst2UI	CCWGG	1 cut(s)	1076
Bst4CI	ACNGT	1 cut(s)	114
Bst6I	CTCTTC	2 cut(s)	632, 750
BstAFI	CTTAAG	1 cut(s)	404
BstAPI	GCANNNNNTGC	1 cut(s)	1013
BstC8I	GCNNGC	5 cut(s)	14, 42, 257, 718, 1018
BstDEI	CTNAG	6 cut(s)	197, 339, 362, 563, 852, 1133
BstF5I	GGATG	4 cut(s)	391, 1036, 1057, 1105
BstFNI	CGCG	3 cut(s)	14, 42, 848
BstHHI	GCGC	5 cut(s)	14, 16, 42, 44, 848
BstKTI	GATC	5 cut(s)	211, 699, 703, 959, 1194
BstMBI	GATC	5 cut(s)	208, 696, 700, 956, 1191
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 261, 917, 1013
BstNI	CCWGG	1 cut(s)	1076
BstSCI	CCNGG	2 cut(s)	279, 1074
BstUI	CGCG	3 cut(s)	14, 42, 848
BstV1I	GCAGC	7 cut(s)	301, 771, 907, 997, 1000, 1019, 1032
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
Bsu15I	ATCGAT	2 cut(s)	699, 1194
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	606, 911
BsuTUI	ATCGAT	2 cut(s)	699, 1194
BtsCI	GGATG	4 cut(s)	391, 1036, 1057, 1105
BveI	ACCTGC	1 cut(s)	796
Cac8I	GCNNGC	5 cut(s)	14, 42, 257, 718, 1018
CaiI	CAGNNNCTG	1 cut(s)	1013
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	5 cut(s)	14, 16, 42, 44, 848
Cfr13I	GGNCC	5 cut(s)	389, 400, 671, 752, 910
ClaI	ATCGAT	2 cut(s)	699, 1194
CseI	GACGC	1 cut(s)	837
CspCI	CAANNNNNGTGG	2 cut(s)	583, 618
CviAII	CATG	6 cut(s)	96, 100, 370, 756, 840, 1124
DdeI	CTNAG	6 cut(s)	197, 339, 362, 563, 852, 1133
DpnI	GATC	5 cut(s)	210, 698, 702, 958, 1193
DpnII	GATC	5 cut(s)	208, 696, 700, 956, 1191
DraI	TTTAAA	1 cut(s)	415
DriI	GACNNNNNGTC	1 cut(s)	991
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	2 cut(s)	632, 750
Eam1105I	GACNNNNNGTC	1 cut(s)	991
EarI	CTCTTC	2 cut(s)	632, 750
Eco47I	GGWCC	4 cut(s)	389, 400, 671, 752
Eco57I	CTGAAG	1 cut(s)	731
EcoRII	CCWGG	1 cut(s)	1074
EcoT22I	ATGCAT	2 cut(s)	101, 492
FaeI	CATG	6 cut(s)	99, 103, 373, 759, 843, 1127
FaqI	GGGAC	2 cut(s)	765, 985
FatI	CATG	6 cut(s)	95, 99, 369, 755, 839, 1123
FauI	CCCGC	1 cut(s)	1154
FauNDI	CATATG	1 cut(s)	18
Fnu4HI	GCNGC	8 cut(s)	290, 760, 844, 921, 1008, 1011, 1014, 1021
FokI	GGATG	4 cut(s)	398, 1043, 1044, 1112
Fsp4HI	GCNGC	8 cut(s)	290, 760, 844, 921, 1008, 1011, 1014, 1021
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	5 cut(s)	13, 15, 41, 43, 847
GluI	GCNGC	8 cut(s)	290, 760, 844, 921, 1008, 1011, 1014, 1021
HaeIII	GGCC	2 cut(s)	606, 911
HapII	CCGG	3 cut(s)	280, 398, 467
HgaI	GACGC	1 cut(s)	837
HhaI	GCGC	5 cut(s)	14, 16, 42, 44, 848
Hin1II	CATG	6 cut(s)	99, 103, 373, 759, 843, 1127
Hin6I	GCGC	5 cut(s)	12, 14, 40, 42, 846
HinP1I	GCGC	5 cut(s)	12, 14, 40, 42, 846
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	4 cut(s)	463, 836, 892, 977
HpaII	CCGG	3 cut(s)	280, 398, 467
HphI	GGTGA	2 cut(s)	114, 470
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	961, 1136
Hpy188III	TCNNGA	5 cut(s)	160, 370, 467, 584, 680
Hpy8I	GTNNAC	1 cut(s)	308
HpyAV	CCTTC	4 cut(s)	476, 552, 789, 1139
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	9 cut(s)	99, 172, 289, 490, 515, 716, 759, 828, 1123
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 261, 917, 1013
HpyF3I	CTNAG	6 cut(s)	197, 339, 362, 563, 852, 1133
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	6 cut(s)	99, 103, 373, 759, 843, 1127
HspAI	GCGC	5 cut(s)	12, 14, 40, 42, 846
Kpn2I	TCCGGA	1 cut(s)	466
Kzo9I	GATC	5 cut(s)	208, 696, 700, 956, 1191
LmnI	GCTCC	3 cut(s)	328, 796, 1158
Lsp1109I	GCAGC	7 cut(s)	301, 771, 907, 997, 1000, 1019, 1032
LweI	GCATC	2 cut(s)	133, 1186
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	233, 707
MalI	GATC	5 cut(s)	210, 698, 702, 958, 1193
MbiI	CCGCTC	1 cut(s)	1161
MboI	GATC	5 cut(s)	208, 696, 700, 956, 1191
MboII	GAAGA	3 cut(s)	537, 649, 737
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	1 cut(s)	208
MlsI	TGGCCA	1 cut(s)	606
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	1 cut(s)	901
MmeI	TCCRAC	1 cut(s)	363
Mox20I	TGGCCA	1 cut(s)	606
Mph1103I	ATGCAT	2 cut(s)	101, 492
MroI	TCCGGA	1 cut(s)	466
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	7 cut(s)	267, 405, 414, 422, 621, 929, 1035
Msp20I	TGGCCA	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	1010
MspCI	CTTAAG	1 cut(s)	404
MspI	CCGG	3 cut(s)	280, 398, 467
MspR9I	CCNGG	2 cut(s)	281, 1076
MunI	CAATTG	1 cut(s)	173
Mva1269I	GAATGC	1 cut(s)	830
MvaI	CCWGG	1 cut(s)	1076
MvnI	CGCG	3 cut(s)	14, 42, 848
MwoI	GCNNNNNNNGC	4 cut(s)	20, 261, 917, 1013
NciI	CCSGG	1 cut(s)	281
NdeI	CATATG	1 cut(s)	18
NdeII	GATC	5 cut(s)	208, 696, 700, 956, 1191
NlaIII	CATG	6 cut(s)	99, 103, 373, 759, 843, 1127
NlaIV	GGNNCC	4 cut(s)	210, 330, 672, 753
NmeAIII	GCCGAG	1 cut(s)	1121
NsiI	ATGCAT	2 cut(s)	101, 492
PagI	TCATGA	1 cut(s)	369
PaqCI	CACCTGC	1 cut(s)	796
PauI	GCGCGC	2 cut(s)	12, 40
PctI	GAATGC	1 cut(s)	830
PfeI	GAWTC	3 cut(s)	463, 836, 977
PkrI	GCNGC	8 cut(s)	291, 761, 845, 922, 1009, 1012, 1015, 1022
PleI	GAGTC	1 cut(s)	900
PpsI	GAGTC	1 cut(s)	900
Psp6I	CCWGG	1 cut(s)	1074
PspGI	CCWGG	1 cut(s)	1074
PspN4I	GGNNCC	4 cut(s)	210, 330, 672, 753
PspPI	GGNCC	5 cut(s)	389, 400, 671, 752, 910
PstNI	CAGNNNCTG	1 cut(s)	1013
PsuI	RGATCY	1 cut(s)	208
PteI	GCGCGC	2 cut(s)	12, 40
PvuII	CAGCTG	1 cut(s)	1010
SaqAI	TTAA	7 cut(s)	267, 405, 414, 422, 621, 929, 1035
SatI	GCNGC	8 cut(s)	290, 760, 844, 921, 1008, 1011, 1014, 1021
Sau3AI	GATC	5 cut(s)	208, 696, 700, 956, 1191
Sau96I	GGNCC	5 cut(s)	389, 400, 671, 752, 910
SchI	GAGTC	1 cut(s)	901
ScrFI	CCNGG	2 cut(s)	281, 1076
SfaNI	GCATC	2 cut(s)	133, 1186
SinI	GGWCC	4 cut(s)	389, 400, 671, 752
SmlI	CTYRAG	2 cut(s)	404, 584
SmoI	CTYRAG	2 cut(s)	404, 584
SsiI	CCGC	4 cut(s)	104, 818, 843, 1161
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	279, 1074
TaaI	ACNGT	1 cut(s)	114
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	4 cut(s)	294, 573, 699, 1194
TauI	GCSGC	1 cut(s)	846
TfiI	GAWTC	3 cut(s)	463, 836, 977
Tru1I	TTAA	7 cut(s)	267, 405, 414, 422, 621, 929, 1035
Tru9I	TTAA	7 cut(s)	267, 405, 414, 422, 621, 929, 1035
TseI	GCWGC	7 cut(s)	289, 759, 920, 1007, 1010, 1013, 1020
TspDTI	ATGAA	5 cut(s)	358, 386, 489, 675, 828
Vha464I	CTTAAG	1 cut(s)	404
VpaK11BI	GGWCC	4 cut(s)	389, 400, 671, 752
XapI	RAATTY	3 cut(s)	410, 476, 1165
XspI	CTAG	1 cut(s)	30
Zsp2I	ATGCAT	2 cut(s)	101, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.