Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002722

Physical Location & Seq

Genomic Coordinates Forward (+)

5266010 .. 5268972

Gene Structure 2963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1935 bp

ATGGCTCATAATAAAGCAGCATATGATCACTGGCTTATCATGCTATGTGTTTTAGTATTTGCTAGTTCATCATGTTCTGCTACTGAAGGTGACACACTCATCAAGTTCAAGACTTCTCTATCCGATACCTCGGCACTAGATAACTGGAATTCTTCTACAAAACCCTGCAACGGTTCCACGAGCCATTGGGCGGGTGTGCTTTGTAACGGCGGGAGCGTATTCGGGCTGCAGCTGCAGAACATGGGCCTAACTGGCCTGATTGACATTGACACGCTCTCGGAGTTGCCGGCCCTCAAGACCATAAGCTTCATGAACAACGGCTTTGGAGGTCCACTGCCCGATGTGAAGAGACTTTCACTCATTAGTGTCTACTTATCCCAGAACCAATTCTCTGGTGATATCCCGGATGATGCTTTCAGTGGCATGGCTGATACCTTGAAGAAAGTTTACTTGGCCAAAAATGGATTTACGGGGAAGATACCGAGTTCTTTGGTTGATCTGCCTAAGCTCATTGAGTTGGACCTTGGGGATAACCAGTTTAGTGGGAAGATACCAAAATTTCAACCAAGGAACTGGACGTTGTTAAATCTGGCAAACAACAGATTGGATGGTCGGATTCCGGCATCACTAAGCAATTTAGATGCAGCCGATTTTCAGGGAAACAAAGGCTTGTGTGGACCGCCTCTTGGCAAGTGCAAGTCCCCAAAGAAGCGACTCCTCCTAATCCTAGCCATCATAGTCATCTCAGTGGCTTTACTATTGTGTGTCTTCCGGATAATCTCATTAATCCGTCGTAGTCGAGCTCGTCGGACCCGTCAAGCCCAATCTGCCCAACAGGAAAAAGCCCAAATGAAGCCGGTAGCCCGTAAAACTGGGGGAGTATTGGAGGCCCAATTACCCGACCTACCGGTGGAAGACGATGAGTACAAAAAGGCAGAAAAAGGAGGGGAGTTGCATTTTGTGAGAAAGGACAGAGAGAGGTTTGAGGTGCAAGAGCTACTTAGGGCACCAGCTGAGGTTTTGGGGAGTGGGAGCTTTGGGTCGTCTTACAAGGCTGGTCTTATGAGTGGGTCTATGGTTGTGAAGAGGTTTAGGGATATGAACAGAGTTGGGAGAGATGATTTCTATGATCACATGAGTAGGATTGGAAGGTTGTCACACCCTAATCTGCTCCCACTCGTTGCATTCTATTACATGAAAGAAGAGAAGCTCTTGGTTCATGACTTTGCTCTAAACGGAAGCTTGGCTAGTCATCTCCATGCCAAGCGAGCCCCGGGACAGCCAGGACTCGACTGGCCAACCCGCCTGATGATCATAAAAGGAGTAGCAAGAGGCCTAGGCTACCTCTACAAAGAGTTCCCAGGCCTGCCTGTCCCCCACGGCCACCTGAAGTCCTCCAACGTCCTCCTCGACCACAGCCTCAACCCGGTCCTAGCCGAATACGCCCTAATCCCTGTCATCAACAAAGACCACGCCCACAAGTTCATGGTCGCCTACAAATCCCCCGAGTACTCCCAAACCGGACGCACCTCCAAGAAGACCGACGTGTGGAGCCTCGGCATCCTCATCTTCGAAATGCTGACCGGAAAGTTCCCCGCAAACTACCTCCAACAGGGCAAGAGGGCCAACGCCGACCTCGCCAGCTGGGTCAACTCGGTGGTCAGGGAGGAGTGGACCGGCGAGGTTTTCGATAAAGACATGAAGGGTACCAAGAATGGAGAAGGCGAGATGCTGAAGCTGTTGAAGATAGGGATGTGCTGCTGTGAGAGTAGTGTTGAAGGGAGGTGGGATTGGAGAGAGGCGGTGGATAAGATCGAGGAGTTGCAGGAGAGGGACAGTGAGGAAGAAGACTACTCGTCGTACGCGAGTGATGGGGATGTGTACTCGTCTAGGGCTGTGACTGATGATGACTTCTCCTTCTCGGTTGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

644

Amino Acids

71.3

Weight (kDa)

8.33

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	27 - 69	5e-08	Leucine rich repeat N-terminal domain
PK_Tyr_Ser-Thr	PF07714	339 - 537	4e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	339 - 601	1.3e-22	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50610 AT3G20190 AT3G20190
fragaria_vesca	FvH4_2g36521 FvH4_2g36530 FvH4_6g36540
malus_domestica	MD08G1125100.v1.1 MD08G1125200.v1.1 MD09G1167500.v1.1 MD15G1104700.v1.1 MD17G1160800.v1.1
prunus_persica	Prupe.1G456700_v2.0.a1 Prupe.1G456800_v2.0.a1 Prupe.3G025500_v2.0.a1
pyrus_communis	pycom08g10400 pycom09g08500 pycom15g09530 pycom17g15310
rosa_chinensis	RchiOBHm_Chr2g0149011 RchiOBHm_Chr6g0305321 RchiOBHm_Chr6g0305341
rosa_laevigata	RLG00000010898 RLG00000010899 RLG00000020362
rosa_multiflora	Rmu_sc0007360.1_g000007 Rmu_ssc0000148.1_g000003
rosa_roxburghii	Rroxscaffold_7G00162890 Rroxscaffold_7G00162900
rosa_rugosa	Rorug02G0408600 Rorug06G0339600 Rorug06G0339700.1
rosa_samantha	Rh2AG467900 Rh2BG480700 Rh2CG454300 Rh2DG489600 Rh6AG451200 Rh6AG451400
rosa_wichuraiana	Rw2G038120 Rw6G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1706
AccB1I	GGYRCC	2 cut(s)	1006, 1706
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	1 cut(s)	1865
AccIII	TCCGGA	1 cut(s)	771
AciI	CCGC	6 cut(s)	191, 210, 680, 1303, 1596, 1802
AcoI	YGGCCR	3 cut(s)	453, 1295, 1381
AcsI	RAATTY	2 cut(s)	148, 557
AcuI	CTGAAG	3 cut(s)	105, 1409, 1754
AfaI	GTAC	5 cut(s)	926, 1511, 1708, 1862, 1883
AfiI	CCNNNNNNNGG	7 cut(s)	170, 190, 686, 910, 1426, 1548, 1612
AflIII	ACRYGT	1 cut(s)	1545
AgeI	ACCGGT	1 cut(s)	907
AgsI	TTSAA	5 cut(s)	109, 439, 563, 1744, 1778
AhdI	GACNNNNNGTC	1 cut(s)	1855
AjiI	CACGTC	1 cut(s)	1546
AjnI	CCWGG	2 cut(s)	1282, 1360
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
Alw21I	GWGCWC	1 cut(s)	805
Alw26I	GTCTC	1 cut(s)	343
Ama87I	CYCGRG	2 cut(s)	1273, 1505
Aor13HI	TCCGGA	1 cut(s)	771
ApeKI	GCWGC	7 cut(s)	17, 226, 229, 232, 644, 1758, 1928
ApoI	RAATTY	2 cut(s)	148, 557
AseI	ATTAAT	1 cut(s)	785
AsiGI	ACCGGT	1 cut(s)	907
Asp700I	GAANNNNTTC	1 cut(s)	386
Asp718I	GGTACC	1 cut(s)	1706
AspA2I	CCTAGG	1 cut(s)	1336
AsuC2I	CCSGG	4 cut(s)	404, 1274, 1275, 1427
AsuHPI	GGTGA	2 cut(s)	101, 407
AsuII	TTCGAA	1 cut(s)	1572
AvaI	CYCGRG	2 cut(s)	1273, 1505
AvaII	GGWCC	6 cut(s)	329, 520, 677, 810, 1429, 1674
AvrII	CCTAGG	1 cut(s)	1336
BaeGI	GKGCMC	1 cut(s)	1009
BalI	TGGCCA	2 cut(s)	455, 1297
BanI	GGYRCC	2 cut(s)	1006, 1706
BanII	GRGCYC	2 cut(s)	805, 1273
BarI	GAAGNNNNNNTAC	2 cut(s)	431, 463
BauI	CACGAG	1 cut(s)	178
BbsI	GAAGAC	4 cut(s)	760, 921, 1544, 1854
Bbv12I	GWGCWC	1 cut(s)	805
BbvCI	CCTCAGC	1 cut(s)	1014
BbvI	GCAGC	6 cut(s)	29, 213, 219, 241, 656, 1745
BccI	CCATC	3 cut(s)	602, 740, 1865
BceAI	ACGGC	3 cut(s)	223, 334, 1396
BciT130I	CCWGG	2 cut(s)	1284, 1362
BclI	TGATCA	3 cut(s)	25, 1129, 1311
BcnI	CCSGG	4 cut(s)	404, 1274, 1275, 1427
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	7 cut(s)	63, 137, 728, 1248, 1337, 1433, 1890
BfmI	CTRYAG	2 cut(s)	227, 233
BglI	GCCNNNNNGGC	1 cut(s)	252
BisI	GCNGC	7 cut(s)	18, 227, 230, 233, 645, 1759, 1929
BlnI	CCTAGG	1 cut(s)	1336
BlsI	GCNGC	7 cut(s)	19, 228, 231, 234, 646, 1760, 1930
BmcAI	AGTACT	1 cut(s)	1511
Bme1390I	CCNGG	6 cut(s)	404, 1274, 1275, 1284, 1362, 1427
Bme18I	GGWCC	6 cut(s)	329, 520, 677, 810, 1429, 1674
BmeRI	GACNNNNNGTC	1 cut(s)	1855
BmeT110I	CYCGRG	2 cut(s)	1273, 1505
BmgBI	CACGTC	1 cut(s)	1546
BmiI	GGNNCC	5 cut(s)	175, 812, 1008, 1553, 1708
BmrFI	CCNGG	6 cut(s)	404, 1274, 1275, 1284, 1362, 1427
BmrI	ACTGGG	1 cut(s)	882
BmsI	GCATC	5 cut(s)	400, 631, 632, 1569, 1719
BmuI	ACTGGG	1 cut(s)	882
BpiI	GAAGAC	4 cut(s)	760, 921, 1544, 1854
Bpu10I	CCTNAGC	2 cut(s)	504, 1014
Bpu14I	TTCGAA	1 cut(s)	1572
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	4 cut(s)	404, 1274, 1275, 1427
BsaJI	CCNNGG	9 cut(s)	129, 523, 566, 1272, 1273, 1336, 1360, 1378, 1555
BsaWI	WCCGGW	4 cut(s)	771, 907, 1520, 1583
Bsc4I	CCNNNNNNNGG	7 cut(s)	170, 190, 686, 910, 1426, 1548, 1612
Bse118I	RCCGGY	4 cut(s)	286, 856, 907, 1676
Bse1I	ACTGG	7 cut(s)	35, 149, 256, 535, 578, 877, 1298
BseAI	TCCGGA	1 cut(s)	771
BseBI	CCWGG	2 cut(s)	1284, 1362
BseDI	CCNNGG	9 cut(s)	129, 523, 566, 1272, 1273, 1336, 1360, 1378, 1555
BseGI	GGATG	5 cut(s)	412, 613, 1560, 1758, 1882
BseLI	CCNNNNNNNGG	7 cut(s)	170, 190, 686, 910, 1426, 1548, 1612
BseMII	CTCAG	2 cut(s)	759, 1005
BseNI	ACTGG	7 cut(s)	35, 149, 256, 535, 578, 877, 1298
BseRI	GAGGAG	4 cut(s)	707, 1397, 1682, 1832
BseSI	GKGCMC	1 cut(s)	1009
BseXI	GCAGC	6 cut(s)	29, 213, 219, 241, 656, 1745
BseYI	CCCAGC	1 cut(s)	1644
Bsh1236I	CGCG	1 cut(s)	1865
BshNI	GGYRCC	2 cut(s)	1006, 1706
BshTI	ACCGGT	1 cut(s)	907
BsiHKAI	GWGCWC	1 cut(s)	805
BsiHKCI	CYCGRG	2 cut(s)	1273, 1505
BsiWI	CGTACG	1 cut(s)	1860
BslFI	GGGAC	4 cut(s)	685, 1290, 1358, 1847
BslI	CCNNNNNNNGG	7 cut(s)	170, 190, 686, 910, 1426, 1548, 1612
BsmAI	GTCTC	1 cut(s)	343
BsmFI	GGGAC	4 cut(s)	685, 1290, 1358, 1847
BsmI	GAATGC	1 cut(s)	1184
BsoBI	CYCGRG	2 cut(s)	1273, 1505
Bsp119I	TTCGAA	1 cut(s)	1572
Bsp1286I	GDGCHC	3 cut(s)	805, 1009, 1273
Bsp13I	TCCGGA	1 cut(s)	771
Bsp143I	GATC	5 cut(s)	25, 496, 1129, 1311, 1812
BspACI	CCGC	6 cut(s)	191, 210, 680, 1303, 1596, 1802
BspCNI	CTCAG	2 cut(s)	758, 1006
BspEI	TCCGGA	1 cut(s)	771
BspFNI	CGCG	1 cut(s)	1865
BspHI	TCATGA	2 cut(s)	309, 1219
BspLI	GGNNCC	5 cut(s)	175, 812, 1008, 1553, 1708
BspMAI	CTGCAG	2 cut(s)	231, 237
BspT104I	TTCGAA	1 cut(s)	1572
BspT107I	GGYRCC	2 cut(s)	1006, 1706
BsrFI	RCCGGY	4 cut(s)	286, 856, 907, 1676
BsrI	ACTGG	7 cut(s)	35, 149, 256, 535, 578, 877, 1298
BssAI	RCCGGY	4 cut(s)	286, 856, 907, 1676
BssECI	CCNNGG	9 cut(s)	129, 523, 566, 1272, 1273, 1336, 1360, 1378, 1555
BssMI	GATC	5 cut(s)	25, 496, 1129, 1311, 1812
BssSI	CACGAG	1 cut(s)	178
BssT1I	CCWWGG	3 cut(s)	523, 566, 1336
Bst2BI	CACGAG	1 cut(s)	178
Bst2UI	CCWGG	2 cut(s)	1284, 1362
Bst4CI	ACNGT	2 cut(s)	173, 1838
Bst6I	CTCTTC	3 cut(s)	341, 1079, 1197
BstBI	TTCGAA	1 cut(s)	1572
BstC8I	GCNNGC	4 cut(s)	288, 1269, 1367, 1642
BstDEI	CTNAG	5 cut(s)	504, 629, 745, 1001, 1014
BstDSI	CCRYGG	1 cut(s)	1378
BstENI	CCTNNNNNAGG	1 cut(s)	1610
BstF5I	GGATG	5 cut(s)	412, 613, 1560, 1758, 1882
BstFNI	CGCG	1 cut(s)	1865
BstKTI	GATC	5 cut(s)	28, 499, 1132, 1314, 1815
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	5 cut(s)	25, 496, 1129, 1311, 1812
BstMWI	GCNNNNNNNGC	7 cut(s)	40, 232, 252, 827, 1268, 1442, 1637
BstNI	CCWGG	2 cut(s)	1284, 1362
BstSCI	CCNGG	6 cut(s)	402, 1272, 1273, 1282, 1360, 1425
BstSFI	CTRYAG	2 cut(s)	227, 233
BstSLI	GKGCMC	1 cut(s)	1009
BstUI	CGCG	1 cut(s)	1865
BstV1I	GCAGC	6 cut(s)	29, 213, 219, 241, 656, 1745
BstV2I	GAAGAC	4 cut(s)	760, 921, 1544, 1854
BstXI	CCANNNNNNTGG	3 cut(s)	392, 542, 573
BtgI	CCRYGG	1 cut(s)	1378
BtrI	CACGTC	1 cut(s)	1546
BtsCI	GGATG	5 cut(s)	412, 613, 1560, 1758, 1882
BtsI	GCAGTG	1 cut(s)	332
BtsIMutI	CAGTG	5 cut(s)	28, 332, 424, 753, 1843
Cac8I	GCNNGC	4 cut(s)	288, 1269, 1367, 1642
CciI	TCATGA	2 cut(s)	309, 1219
Cfr10I	RCCGGY	4 cut(s)	286, 856, 907, 1676
Cfr9I	CCCGGG	1 cut(s)	1273
CseI	GACGC	1 cut(s)	1533
Csp6I	GTAC	5 cut(s)	925, 1510, 1707, 1861, 1882
CspAI	ACCGGT	1 cut(s)	907
CviQI	GTAC	5 cut(s)	925, 1510, 1707, 1861, 1882
DdeI	CTNAG	5 cut(s)	504, 629, 745, 1001, 1014
DpnI	GATC	5 cut(s)	27, 498, 1131, 1313, 1814
DpnII	GATC	5 cut(s)	25, 496, 1129, 1311, 1812
DriI	GACNNNNNGTC	1 cut(s)	1855
EaeI	YGGCCR	3 cut(s)	453, 1295, 1381
Eam1104I	CTCTTC	3 cut(s)	341, 1079, 1197
Eam1105I	GACNNNNNGTC	1 cut(s)	1855
EarI	CTCTTC	3 cut(s)	341, 1079, 1197
Ecl136II	GAGCTC	1 cut(s)	803
Eco130I	CCWWGG	3 cut(s)	523, 566, 1336
Eco147I	AGGCCT	2 cut(s)	1335, 1365
Eco24I	GRGCYC	2 cut(s)	805, 1273
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	6 cut(s)	329, 520, 677, 810, 1429, 1674
Eco53kI	GAGCTC	1 cut(s)	803
Eco57I	CTGAAG	3 cut(s)	105, 1409, 1754
Eco88I	CYCGRG	2 cut(s)	1273, 1505
EcoICRI	GAGCTC	1 cut(s)	803
EcoNI	CCTNNNNNAGG	1 cut(s)	1610
EcoRI	GAATTC	1 cut(s)	148
EcoRII	CCWGG	2 cut(s)	1282, 1360
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	3 cut(s)	523, 566, 1336
EcoT38I	GRGCYC	2 cut(s)	805, 1273
ErhI	CCWWGG	3 cut(s)	523, 566, 1336
FalI	AAGNNNNNCTT	2 cut(s)	984, 1016
FaqI	GGGAC	4 cut(s)	685, 1290, 1358, 1847
FauI	CCCGC	4 cut(s)	184, 203, 1310, 1603
FauNDI	CATATG	1 cut(s)	22
FbaI	TGATCA	3 cut(s)	25, 1129, 1311
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	7 cut(s)	18, 227, 230, 233, 645, 1759, 1929
FokI	GGATG	5 cut(s)	419, 620, 1547, 1765, 1889
FriOI	GRGCYC	2 cut(s)	805, 1273
Fsp4HI	GCNGC	7 cut(s)	18, 227, 230, 233, 645, 1759, 1929
FspBI	CTAG	7 cut(s)	63, 137, 728, 1248, 1337, 1433, 1890
GluI	GCNGC	7 cut(s)	18, 227, 230, 233, 645, 1759, 1929
GsaI	CCCAGC	1 cut(s)	1648
HgaI	GACGC	1 cut(s)	1533
HincII	GTYRAC	1 cut(s)	1651
HindII	GTYRAC	1 cut(s)	1651
HindIII	AAGCTT	2 cut(s)	304, 1240
HinfI	GANTC	3 cut(s)	616, 714, 1287
HphI	GGTGA	2 cut(s)	101, 407
Hpy166II	GTNNAC	7 cut(s)	332, 370, 448, 677, 1651, 1674, 1882
Hpy188I	TCNGA	4 cut(s)	124, 280, 615, 810
Hpy188III	TCNNGA	5 cut(s)	109, 295, 310, 772, 1220
Hpy8I	GTNNAC	7 cut(s)	332, 370, 448, 677, 1651, 1674, 1882
Hpy99I	CGWCG	4 cut(s)	795, 810, 1547, 1861
HpyAV	CCTTC	6 cut(s)	80, 1143, 1696, 1715, 1772, 1927
HpyCH4III	ACNGT	2 cut(s)	173, 1838
HpyCH4IV	ACGT	3 cut(s)	578, 1401, 1545
HpyF10VI	GCNNNNNNNGC	7 cut(s)	40, 232, 252, 827, 1268, 1442, 1637
HpyF3I	CTNAG	5 cut(s)	504, 629, 745, 1001, 1014
HpySE526I	ACGT	3 cut(s)	578, 1401, 1545
Kpn2I	TCCGGA	1 cut(s)	771
KpnI	GGTACC	1 cut(s)	1710
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Ksp22I	TGATCA	3 cut(s)	25, 1129, 1311
Kzo9I	GATC	5 cut(s)	25, 496, 1129, 1311, 1812
LmnI	GCTCC	4 cut(s)	213, 1032, 1176, 1551
Lsp1109I	GCAGC	6 cut(s)	29, 213, 219, 241, 656, 1745
LweI	GCATC	5 cut(s)	400, 631, 632, 1569, 1719
MaeI	CTAG	7 cut(s)	63, 137, 728, 1248, 1337, 1433, 1890
MaeII	ACGT	3 cut(s)	578, 1401, 1545
MaeIII	GTNAC	4 cut(s)	89, 203, 1155, 1897
MalI	GATC	5 cut(s)	27, 498, 1131, 1313, 1814
MboI	GATC	5 cut(s)	25, 496, 1129, 1311, 1812
MhlI	GDGCHC	3 cut(s)	805, 1009, 1273
MlsI	TGGCCA	2 cut(s)	455, 1297
MluCI	AATT	5 cut(s)	148, 386, 557, 634, 893
MluNI	TGGCCA	2 cut(s)	455, 1297
MlyI	GAGTC	2 cut(s)	708, 1281
MmeI	TCCRAC	5 cut(s)	498, 593, 788, 1422, 1633
Mox20I	TGGCCA	2 cut(s)	455, 1297
MroI	TCCGGA	1 cut(s)	771
MroNI	GCCGGC	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	386
MscI	TGGCCA	2 cut(s)	455, 1297
MseI	TTAA	2 cut(s)	584, 785
MslI	CAYNNNNRTG	2 cut(s)	746, 1257
Msp20I	TGGCCA	2 cut(s)	455, 1297
MspA1I	CMGCKG	3 cut(s)	232, 1013, 1644
MspR9I	CCNGG	6 cut(s)	404, 1274, 1275, 1284, 1362, 1427
Mva1269I	GAATGC	1 cut(s)	1184
MvaI	CCWGG	2 cut(s)	1284, 1362
MvnI	CGCG	1 cut(s)	1865
MwoI	GCNNNNNNNGC	7 cut(s)	40, 232, 252, 827, 1268, 1442, 1637
NaeI	GCCGGC	1 cut(s)	288
NciI	CCSGG	4 cut(s)	404, 1274, 1275, 1427
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	5 cut(s)	25, 496, 1129, 1311, 1812
NgoMIV	GCCGGC	1 cut(s)	286
NlaIV	GGNNCC	5 cut(s)	175, 812, 1008, 1553, 1708
NmeAIII	GCCGAG	2 cut(s)	110, 1536
NmuCI	GTSAC	3 cut(s)	89, 1155, 1897
NspV	TTCGAA	1 cut(s)	1572
PagI	TCATGA	2 cut(s)	309, 1219
PceI	AGGCCT	2 cut(s)	1335, 1365
PcsI	WCGNNNNNNNCGW	4 cut(s)	213, 811, 1407, 1862
PctI	GAATGC	1 cut(s)	1184
PdiI	GCCGGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	616
Pfl23II	CGTACG	1 cut(s)	1860
PfoI	TCCNGGA	1 cut(s)	402
PinAI	ACCGGT	1 cut(s)	907
PkrI	GCNGC	7 cut(s)	19, 228, 231, 234, 646, 1760, 1930
PleI	GAGTC	2 cut(s)	708, 1281
PpsI	GAGTC	2 cut(s)	708, 1281
PshBI	ATTAAT	1 cut(s)	785
Psp124BI	GAGCTC	1 cut(s)	805
Psp6I	CCWGG	2 cut(s)	1282, 1360
PspFI	CCCAGC	1 cut(s)	1644
PspGI	CCWGG	2 cut(s)	1282, 1360
PspLI	CGTACG	1 cut(s)	1860
PspN4I	GGNNCC	5 cut(s)	175, 812, 1008, 1553, 1708
PstI	CTGCAG	2 cut(s)	231, 237
PvuII	CAGCTG	3 cut(s)	232, 1013, 1644
RsaI	GTAC	5 cut(s)	926, 1511, 1708, 1862, 1883
RsaNI	GTAC	5 cut(s)	925, 1510, 1707, 1861, 1882
RseI	CAYNNNNRTG	2 cut(s)	746, 1257
SacI	GAGCTC	1 cut(s)	805
SaqAI	TTAA	2 cut(s)	584, 785
SatI	GCNGC	7 cut(s)	18, 227, 230, 233, 645, 1759, 1929
Sau3AI	GATC	5 cut(s)	25, 496, 1129, 1311, 1812
ScaI	AGTACT	1 cut(s)	1511
SchI	GAGTC	2 cut(s)	708, 1281
ScrFI	CCNGG	6 cut(s)	404, 1274, 1275, 1284, 1362, 1427
SduI	GDGCHC	3 cut(s)	805, 1009, 1273
SfaNI	GCATC	5 cut(s)	400, 631, 632, 1569, 1719
SfcI	CTRYAG	2 cut(s)	227, 233
SfiI	GGCCNNNNNGGCC	1 cut(s)	252
SfuI	TTCGAA	1 cut(s)	1572
SinI	GGWCC	6 cut(s)	329, 520, 677, 810, 1429, 1674
SmaI	CCCGGG	1 cut(s)	1275
SmiMI	CAYNNNNRTG	2 cut(s)	746, 1257
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	5 cut(s)	148, 386, 557, 634, 893
SseBI	AGGCCT	2 cut(s)	1335, 1365
SsiI	CCGC	6 cut(s)	191, 210, 680, 1303, 1596, 1802
SspMI	CTAG	7 cut(s)	63, 137, 728, 1248, 1337, 1433, 1890
SstI	GAGCTC	1 cut(s)	805
StuI	AGGCCT	2 cut(s)	1335, 1365
StyD4I	CCNGG	6 cut(s)	402, 1272, 1273, 1282, 1360, 1425
StyI	CCWWGG	3 cut(s)	523, 566, 1336
TaaI	ACNGT	2 cut(s)	173, 1838
TaiI	ACGT	3 cut(s)	581, 1404, 1548
TaqI	TCGA	6 cut(s)	799, 1290, 1410, 1572, 1689, 1815
TaqII	GACCGA	1 cut(s)	1556
TasI	AATT	5 cut(s)	148, 386, 557, 634, 893
TatI	WGTACW	3 cut(s)	924, 1509, 1881
TfiI	GAWTC	1 cut(s)	616
Tru1I	TTAA	2 cut(s)	584, 785
Tru9I	TTAA	2 cut(s)	584, 785
TscAI	CASTG	5 cut(s)	35, 339, 424, 753, 1843
TseFI	GTSAC	3 cut(s)	89, 1155, 1897
TseI	GCWGC	7 cut(s)	17, 226, 229, 232, 644, 1758, 1928
Tsp45I	GTSAC	3 cut(s)	89, 1155, 1897
TspDTI	ATGAA	9 cut(s)	57, 298, 326, 866, 1115, 1208, 1211, 1474, 1715
TspGWI	ACGGA	2 cut(s)	779, 1251
TspMI	CCCGGG	1 cut(s)	1273
TspRI	CASTG	5 cut(s)	35, 339, 424, 753, 1843
VpaK11BI	GGWCC	6 cut(s)	329, 520, 677, 810, 1429, 1674
VspI	ATTAAT	1 cut(s)	785
XagI	CCTNNNNNAGG	1 cut(s)	1610
XapI	RAATTY	2 cut(s)	148, 557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1290
XmaI	CCCGGG	1 cut(s)	1273
XmaJI	CCTAGG	1 cut(s)	1336
XmiI	GTMKAC	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	7 cut(s)	63, 137, 728, 1248, 1337, 1433, 1890
ZrmI	AGTACT	1 cut(s)	1511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.