Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002722

Physical Location & Seq

Genomic Coordinates Forward (+)

8705967 .. 8706755

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g10400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGATGGCACATATTCACAAAGCATCATATGATCACCATCACTGGCTTTTCATGCTAATTTTCTTAGTCCTATCATACGTTGCTTCCTCTTCAGATCCGACCGAGCCAGCCACCCTCCTCAAGTTCAAGTCGTTTCTATCCAACGACAGTGCTTTGGACAACTGGACAAACGCCACACCTCCCTGCAACGGTGCGCACAACCTCTGGGCAGGTTTGCTTTGTGATGGCGACGGCAATGTGTTCGGGTTGGCTTTAACAAATATGGGTCTCCGGGGGATAATCGATATAGACACACTTATGGATTTGTCTGCCCTGAAAACCGTAAGCTTCATGAACAATAGCTTTGAAGGTCCTATCCCTAGTGTGAACAAACTTAGTTCACTTACATCAGTTTACTTGTCGTACAATCAATTCAATGGTGAAATCCCAGATAATTTTTTTGTTGGCCTGAATTCCTTGAAGAAAATTTATCTGGTTGGGAATGAATTCATGGGTAAAATACCAAACTCGCTGGCTGCATTGACTAAGATTGTGGAAATGGATATTCGGGGAAACCAATTCAGTGGGAAACTACCAAATTTTCCACAAAATCCAAATGCATGGAAGACTATGAATGTGTCATACAATCGGCTCGAGGGTCCTATACCGGCAAACCTAAGCAATTTCGATGCAAGCGTTTTTGTGGGTAAGCAAATTAATAACCTGCGACAGTTAGTGCTTGGTTTACTAATACTTTTCTTTTTAATGTTGAAAAAATTCTCAAGTTTAATGCGCCCTGCTAATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

263

Amino Acids

29.1

Weight (kDa)

8.48

Isoelectric Point (pI)

16.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	33 - 75	9.1e-06	Leucine rich repeat N-terminal domain
LRR_8	PF13855	127 - 187	4.7e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50610 AT3G20190 AT3G20190
fragaria_vesca	FvH4_2g36521 FvH4_2g36530 FvH4_6g36540
malus_domestica	MD08G1125100.v1.1 MD08G1125200.v1.1 MD09G1167500.v1.1 MD15G1104700.v1.1 MD17G1160800.v1.1
prunus_persica	Prupe.1G456700_v2.0.a1 Prupe.1G456800_v2.0.a1 Prupe.3G025500_v2.0.a1
pyrus_communis	pycom08g10400 pycom09g08500 pycom15g09530 pycom17g15310
rosa_chinensis	RchiOBHm_Chr2g0149011 RchiOBHm_Chr6g0305321 RchiOBHm_Chr6g0305341
rosa_laevigata	RLG00000010898 RLG00000010899 RLG00000020362
rosa_multiflora	Rmu_sc0007360.1_g000007 Rmu_ssc0000148.1_g000003
rosa_roxburghii	Rroxscaffold_7G00162890 Rroxscaffold_7G00162900
rosa_rugosa	Rorug02G0408600 Rorug06G0339600 Rorug06G0339700.1
rosa_samantha	Rh2AG467900 Rh2BG480700 Rh2CG454300 Rh2DG489600 Rh6AG451200 Rh6AG451400
rosa_wichuraiana	Rw2G038120 Rw6G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	195
Acc36I	ACCTGC	2 cut(s)	200, 711
AclWI	GGATC	1 cut(s)	89
AcsI	RAATTY	5 cut(s)	451, 465, 485, 577, 755
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	5 cut(s)	127, 347, 415, 460, 751
AluBI	AGCT	2 cut(s)	327, 342
AluI	AGCT	2 cut(s)	327, 342
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	632
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	5 cut(s)	451, 465, 485, 577, 755
AseI	ATTAAT	1 cut(s)	696
Asp700I	GAANNNNTTC	2 cut(s)	485, 755
AspLEI	GCGC	2 cut(s)	196, 774
AspS9I	GGNCC	2 cut(s)	350, 638
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	26, 431
AvaI	CYCGRG	1 cut(s)	632
AvaII	GGWCC	2 cut(s)	350, 638
BbsI	GAAGAC	1 cut(s)	611
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	2 cut(s)	45, 218
BceAI	ACGGC	1 cut(s)	247
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	360
BfuAI	ACCTGC	2 cut(s)	200, 711
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	2 cut(s)	350, 638
BmeT110I	CYCGRG	1 cut(s)	632
BmgT120I	GGNCC	2 cut(s)	350, 638
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	2 cut(s)	32, 658
BpiI	GAAGAC	1 cut(s)	611
Bpu10I	CCTNAGC	1 cut(s)	656
BpuEI	CTTGAG	2 cut(s)	104, 745
BpuMI	CCSGG	1 cut(s)	272
Bsa29I	ATCGAT	2 cut(s)	282, 784
BsaBI	GATNNNNATC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse118I	RCCGGY	1 cut(s)	646
Bse1I	ACTGG	2 cut(s)	47, 167
Bse3DI	GCAATG	1 cut(s)	241
Bse8I	GATNNNNATC	1 cut(s)	36
BseCI	ATCGAT	2 cut(s)	282, 784
BseDI	CCNNGG	1 cut(s)	271
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	1 cut(s)	241
BseNI	ACTGG	2 cut(s)	47, 167
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	502
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	447
BshVI	ATCGAT	2 cut(s)	282, 784
BsiEI	CGRYCG	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	632
BsiSI	CCGG	2 cut(s)	271, 647
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	447
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	632
Bsp143I	GATC	2 cut(s)	31, 94
BspANI	GGCC	1 cut(s)	447
BspDI	ATCGAT	2 cut(s)	282, 784
BspHI	TCATGA	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	639
BspMI	ACCTGC	2 cut(s)	200, 711
BspPI	GGATC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	646
BsrI	ACTGG	2 cut(s)	47, 167
BssAI	RCCGGY	1 cut(s)	646
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	2 cut(s)	31, 94
Bst4CI	ACNGT	4 cut(s)	149, 191, 322, 711
Bst6I	CTCTTC	1 cut(s)	94
BstC8I	GCNNGC	3 cut(s)	108, 513, 673
BstDEI	CTNAG	4 cut(s)	64, 374, 525, 656
BstHHI	GCGC	2 cut(s)	196, 774
BstKTI	GATC	2 cut(s)	34, 97
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	2 cut(s)	31, 94
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	502
BstV2I	GAAGAC	1 cut(s)	611
BstX2I	RGATCY	1 cut(s)	94
BstXI	CCANNNNNNTGG	2 cut(s)	563, 600
BstYI	RGATCY	1 cut(s)	94
Bsu15I	ATCGAT	2 cut(s)	282, 784
BsuRI	GGCC	1 cut(s)	447
BsuTUI	ATCGAT	2 cut(s)	282, 784
BtsIMutI	CAGTG	3 cut(s)	40, 154, 568
BveI	ACCTGC	2 cut(s)	200, 711
Cac8I	GCNNGC	3 cut(s)	108, 513, 673
CciI	TCATGA	1 cut(s)	330
CfoI	GCGC	2 cut(s)	196, 774
Cfr10I	RCCGGY	1 cut(s)	646
Cfr13I	GGNCC	2 cut(s)	350, 638
ClaI	ATCGAT	2 cut(s)	282, 784
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	4 cut(s)	52, 331, 490, 600
CviJI	RGCY	9 cut(s)	46, 106, 110, 251, 327, 342, 447, 515, 631
CviKI_1	RGCY	9 cut(s)	46, 106, 110, 251, 327, 342, 447, 515, 631
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	4 cut(s)	64, 374, 525, 656
DpnI	GATC	2 cut(s)	33, 96
DpnII	GATC	2 cut(s)	31, 94
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	350, 638
Eco57I	CTGAAG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	632
EcoO109I	RGGNCCY	2 cut(s)	350, 638
EcoRI	GAATTC	2 cut(s)	451, 485
EcoT22I	ATGCAT	1 cut(s)	601
FaeI	CATG	4 cut(s)	55, 334, 493, 603
FatI	CATG	4 cut(s)	51, 330, 489, 599
FauNDI	CATATG	1 cut(s)	28
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	516
Fsp4HI	GCNGC	1 cut(s)	516
FspAI	RTGCGCAY	1 cut(s)	195
FspBI	CTAG	1 cut(s)	360
FspI	TGCGCA	1 cut(s)	195
GlaI	GCGC	2 cut(s)	195, 773
GluI	GCNGC	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	2 cut(s)	271, 647
HhaI	GCGC	2 cut(s)	196, 774
Hin1II	CATG	4 cut(s)	55, 334, 493, 603
Hin6I	GCGC	2 cut(s)	194, 772
HinP1I	GCGC	2 cut(s)	194, 772
HindIII	AAGCTT	1 cut(s)	325
HpaII	CCGG	2 cut(s)	271, 647
HphI	GGTGA	2 cut(s)	26, 431
Hpy166II	GTNNAC	4 cut(s)	367, 380, 394, 725
Hpy188I	TCNGA	2 cut(s)	94, 99
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	4 cut(s)	367, 380, 394, 725
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	4 cut(s)	149, 191, 322, 711
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	4 cut(s)	186, 518, 599, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	4 cut(s)	64, 374, 525, 656
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	4 cut(s)	55, 334, 493, 603
HspAI	GCGC	2 cut(s)	194, 772
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	31, 94
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	2 cut(s)	32, 658
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	78
MalI	GATC	2 cut(s)	33, 96
MboI	GATC	2 cut(s)	31, 94
MboII	GAAGA	3 cut(s)	81, 472, 616
MflI	RGATCY	1 cut(s)	94
MmeI	TCCRAC	2 cut(s)	122, 165
MnlI	CCTC	6 cut(s)	97, 125, 128, 189, 212, 628
Mph1103I	ATGCAT	1 cut(s)	601
MroXI	GAANNNNTTC	2 cut(s)	485, 755
MseI	TTAA	4 cut(s)	254, 696, 743, 767
MslI	CAYNNNNRTG	1 cut(s)	296
MspI	CCGG	2 cut(s)	271, 647
MspR9I	CCNGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	52
NciI	CCSGG	1 cut(s)	272
NdeI	CATATG	1 cut(s)	28
NdeII	GATC	2 cut(s)	31, 94
NlaIII	CATG	4 cut(s)	55, 334, 493, 603
NlaIV	GGNNCC	1 cut(s)	639
NsbI	TGCGCA	1 cut(s)	195
NsiI	ATGCAT	1 cut(s)	601
PaeR7I	CTCGAG	1 cut(s)	632
PagI	TCATGA	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	672
PdmI	GAANNNNTTC	2 cut(s)	485, 755
PkrI	GCNGC	1 cut(s)	517
PpuMI	RGGWCCY	2 cut(s)	350, 638
PshBI	ATTAAT	1 cut(s)	696
Psp5II	RGGWCCY	2 cut(s)	350, 638
PspN4I	GGNNCC	1 cut(s)	639
PspPI	GGNCC	2 cut(s)	350, 638
PspPPI	RGGWCCY	2 cut(s)	350, 638
PspXI	VCTCGAGB	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	4 cut(s)	254, 696, 743, 767
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	2 cut(s)	31, 94
Sau96I	GGNCC	2 cut(s)	350, 638
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	9 cut(s)	81, 181, 204, 214, 329, 344, 352, 657, 705
SfaNI	GCATC	2 cut(s)	32, 658
Sfr274I	CTCGAG	1 cut(s)	632
SinI	GGWCC	2 cut(s)	350, 638
SlaI	CTCGAG	1 cut(s)	632
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	3 cut(s)	119, 632, 760
SmoI	CTYRAG	3 cut(s)	119, 632, 760
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	270
TaaI	ACNGT	4 cut(s)	149, 191, 322, 711
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	4 cut(s)	282, 633, 666, 784
TaqII	GACCGA	1 cut(s)	116
Tru1I	TTAA	4 cut(s)	254, 696, 743, 767
Tru9I	TTAA	4 cut(s)	254, 696, 743, 767
TscAI	CASTG	3 cut(s)	47, 154, 568
TseI	GCWGC	1 cut(s)	515
TspDTI	ATGAA	6 cut(s)	40, 319, 347, 478, 498, 626
TspRI	CASTG	3 cut(s)	47, 154, 568
VpaK11BI	GGWCC	2 cut(s)	350, 638
VspI	ATTAAT	1 cut(s)	696
XapI	RAATTY	5 cut(s)	451, 465, 485, 577, 755
XhoI	CTCGAG	1 cut(s)	632
XmnI	GAANNNNTTC	2 cut(s)	485, 755
XspI	CTAG	1 cut(s)	360
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.