Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002722

Physical Location & Seq

Genomic Coordinates Forward (+)

7346432 .. 7349483

Gene Structure 3052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1104700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1938 bp

ATGGCTCATATTCACAAAGCATATGATCACCATCACTGGCTTTTCATGCTAATTTTCTTAGTATTATCGTACGTTGCTTCATCTTCGGACCCGACGGAGGCAGCCACCCTCCTCAAGTTCAAGTCATCTCTATTGAACGCCACTGCTCTGGACAATTGGACTAATGCCACACCTCCATGCAACGGCACGGACAACTGGGCAGGTCTGTATTGTGATCACGATGACAATGTGTTCGGGTTGAATTTATCGAAGATGGGTCTACGGGGGATCATCGATATAGACGCACTTTTGAATTTATCTGGCCTGAAAACCGTAAGCGTCATGAACAATAGCTTTGACGGGCCTATCCCTAGTGTGAACAAACTTAGTTCACTTGTGTCATTTTACTTGTCGTACAATAACTTCTCTGGTGAAATCCCAGAAGACTTTTTTGTTGGGATGAATTCCTTGAAGAAAATTTATTTGGATGGGAATGAATTCACGGGGAAAATACCAAAGTCGTTGGCTGCATTGACTAAGATTGTGGAATTGGATATTCGGGGAAACCAATTCAGTGGGAAGCTACCAAAATTTTCACAAAATCCAAAGGCATGGAAAACTATGAATGTGTCATACAACAGACTCGAGGGTCGTATTCCGGCAAGCCTGAGAAATTCCGACCCAAGCGCTTTCCTCGGAAACCTAGACTTGTGTGGGAAGCCACTGGCTGCGTGCAAGTCCTCAAAGAAGAAACTCCTCCTAATCATCGCCGTCACAGTCATCTCAGTGGCTGTAATCTTGTTCATTGCAGCATGCCTCGAACGACGCCGTTCAGCACAATCAAAACAAGTAACAAGAGTACAAGACAAACTAGGGGCTCACCATGACACAGGTGCAATGGAGGTCCAATTGGCAGCTGAAGAAGAAAATAACAACTTCCATAACAATGCTGAGAGAGGAGGAGGAGGAGGAGGAGGAGAGTTGTATTTTGTGCAGCAGGACAGAAATTTTGAGTTGGAAGAGTTGCTGAGGGCCCCAGCTGAGGTTTTGGGGAGTGGGTCCTTTGGGTCATCTTACAAGGCAGGGATTTTGAGTGGGTCCGTGGTTGTGAAGAAGTTTAGGCAAATGAACCAAGTGAGGAAAGATGAATTTTATGACCACATGAGAAGGCTTGGGAGGTTGTCACACCCTAATTTGCTCCCACTTATTGCCTTCTATTACAGGAAAGAAGAGAAGCTCTTGGTTCATGCTTTTGTTGCCAATGGAAGCTTGGCTAGTCACCTCCATGTTAAGCGAGAACCCGGGCAGCCAGGATTGGATTGGGCAACTCGGTTGATGATCATCAAAGGAGTGGCAAGGGGCTTGGCCTACCTCTACAGAGAGTTCCCCGGCTTAACCGTACCCCATGGTCACCTCAAGTCTTCCAACGTGCTCCTAGACAACAACTTCAACCCCCTCTTAGCAGAATATGCCCTCATACCCTTAATCAACAGAGACCATGCACAAAAGTTCATGGTGGCCTTCAAGTCCCCGGAGTTCTACCACACCGAACGCACGTTGAAAAAGACCGATGTATGGAGCCTAGGCATACTCATCTTAGAAATGCTCACCGGAAAATTCCCAGCAAACTATCTCCAACCGGGGAAGCGAGCGAATGCAGACTTGGCGGCTTGGGTGAACTCGGTTGTGAGGGAAGAGTGGACGGGTGAAGTGTTTGACAAGGACATGAAGGGGACGAAGAACGGGGAAGGCGAAATGCTGAAGCTGCTAAAGATTGGGATGTGTTGCTGTGAGAGCAATGTGGAGGGGAGGTGGGATTGGAGAGAAGTTGTGGACAAGATTGAACAGTTGAAGGAGAGGGATACTGATGAAGATTACTCTTCTTATGCTAGTGATGGGGATGCGTATTCTTCTAGGGTTATTTCTGAGGATGACTTGTCTTTCTCTGTCACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

646

Amino Acids

71.92

Weight (kDa)

7.28

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 72	4.6e-07	Leucine rich repeat N-terminal domain
LRR_8	PF13855	124 - 184	3.1e-08	Leucine rich repeat
PK_Tyr_Ser-Thr	PF07714	341 - 538	1.5e-25	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	341 - 604	5e-24	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50610 AT3G20190 AT3G20190
fragaria_vesca	FvH4_2g36521 FvH4_2g36530 FvH4_6g36540
malus_domestica	MD08G1125100.v1.1 MD08G1125200.v1.1 MD09G1167500.v1.1 MD15G1104700.v1.1 MD17G1160800.v1.1
prunus_persica	Prupe.1G456700_v2.0.a1 Prupe.1G456800_v2.0.a1 Prupe.3G025500_v2.0.a1
pyrus_communis	pycom08g10400 pycom09g08500 pycom15g09530 pycom17g15310
rosa_chinensis	RchiOBHm_Chr2g0149011 RchiOBHm_Chr6g0305321 RchiOBHm_Chr6g0305341
rosa_laevigata	RLG00000010898 RLG00000010899 RLG00000020362
rosa_multiflora	Rmu_sc0007360.1_g000007 Rmu_ssc0000148.1_g000003
rosa_roxburghii	Rroxscaffold_7G00162890 Rroxscaffold_7G00162900
rosa_rugosa	Rorug02G0408600 Rorug06G0339600 Rorug06G0339700.1
rosa_samantha	Rh2AG467900 Rh2BG480700 Rh2CG454300 Rh2DG489600 Rh6AG451200 Rh6AG451400
rosa_wichuraiana	Rw2G038120 Rw6G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	627
Acc36I	ACCTGC	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	259
AciI	CCGC	1 cut(s)	1646
AclWI	GGATC	1 cut(s)	275
AcuI	CTGAAG	2 cut(s)	918, 1760
AcyI	GRCGYC	1 cut(s)	805
AfaI	GTAC	4 cut(s)	71, 395, 840, 1380
AfeI	AGCGCT	1 cut(s)	667
AfiI	CCNNNNNNNGG	4 cut(s)	97, 182, 1021, 1554
AjnI	CCWGG	1 cut(s)	1288
AjuI	GAANNNNNNNTTGG	4 cut(s)	446, 478, 1625, 1657
AluBI	AGCT	7 cut(s)	333, 562, 896, 1019, 1216, 1248, 1744
AluI	AGCT	7 cut(s)	333, 562, 896, 1019, 1216, 1248, 1744
Alw21I	GWGCWC	1 cut(s)	1413
Alw26I	GTCTC	1 cut(s)	1467
AlwI	GGATC	1 cut(s)	275
AlwNI	CAGNNNCTG	1 cut(s)	770
Ama87I	CYCGRG	2 cut(s)	623, 1280
Aor51HI	AGCGCT	1 cut(s)	667
AoxI	GGCC	5 cut(s)	301, 341, 1011, 1344, 1497
ApaI	GGGCCC	1 cut(s)	1015
ApeKI	GCWGC	8 cut(s)	101, 506, 707, 788, 893, 973, 1285, 1744
ArsI	GACNNNNNNTTYG	4 cut(s)	215, 247, 971, 1003
Asp700I	GAANNNNTTC	1 cut(s)	476
AspA2I	CCTAGG	1 cut(s)	1561
AspLEI	GCGC	1 cut(s)	668
AspS9I	GGNCC	7 cut(s)	88, 341, 883, 1011, 1012, 1038, 1077
AsuC2I	CCSGG	5 cut(s)	1281, 1282, 1368, 1511, 1620
AsuHPI	GGTGA	8 cut(s)	20, 422, 851, 1250, 1382, 1579, 1666, 1697
AvaI	CYCGRG	2 cut(s)	623, 1280
AvaII	GGWCC	4 cut(s)	88, 883, 1038, 1077
AvrII	CCTAGG	1 cut(s)	1561
BaeGI	GKGCMC	1 cut(s)	1015
BanII	GRGCYC	2 cut(s)	859, 1015
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
BbsI	GAAGAC	2 cut(s)	429, 1392
Bbv12I	GWGCWC	1 cut(s)	1413
BbvCI	CCTCAGC	2 cut(s)	1007, 1020
BbvI	GCAGC	8 cut(s)	113, 493, 694, 800, 905, 985, 1297, 1731
BccI	CCATC	4 cut(s)	39, 247, 461, 1868
BceAI	ACGGC	3 cut(s)	199, 734, 792
BciT130I	CCWGG	1 cut(s)	1290
BciVI	GTATCC	1 cut(s)	1834
BclI	TGATCA	3 cut(s)	25, 214, 1317
BcnI	CCSGG	5 cut(s)	1281, 1282, 1368, 1511, 1620
BcoDI	GTCTC	1 cut(s)	1467
BfaI	CTAG	8 cut(s)	351, 683, 851, 1254, 1415, 1562, 1869, 1893
BfmI	CTRYAG	1 cut(s)	1354
BfoI	RGCGCY	1 cut(s)	669
BfuAI	ACCTGC	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	1834
BisI	GCNGC	9 cut(s)	102, 507, 708, 789, 894, 974, 1286, 1647, 1745
BlnI	CCTAGG	1 cut(s)	1561
BlsI	GCNGC	9 cut(s)	103, 508, 709, 790, 895, 975, 1287, 1648, 1746
Bme1390I	CCNGG	6 cut(s)	1281, 1282, 1290, 1368, 1511, 1620
Bme18I	GGWCC	4 cut(s)	88, 883, 1038, 1077
BmeT110I	CYCGRG	2 cut(s)	623, 1280
BmgT120I	GGNCC	7 cut(s)	88, 341, 883, 1011, 1012, 1038, 1077
BmiI	GGNNCC	6 cut(s)	90, 1013, 1014, 1039, 1078, 1559
BmrFI	CCNGG	6 cut(s)	1281, 1282, 1290, 1368, 1511, 1620
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	1870
BmuI	ACTGGG	1 cut(s)	205
BpiI	GAAGAC	2 cut(s)	429, 1392
Bpu10I	CCTNAGC	2 cut(s)	1007, 1020
BpuEI	CTTGAG	2 cut(s)	98, 1379
BpuMI	CCSGG	5 cut(s)	1281, 1282, 1368, 1511, 1620
Bsa29I	ATCGAT	1 cut(s)	273
BsaBI	GATNNNNATC	2 cut(s)	30, 1319
BsaHI	GRCGYC	1 cut(s)	805
BsaI	GGTCTC	1 cut(s)	1467
BsaJI	CCNNGG	8 cut(s)	673, 1080, 1280, 1366, 1384, 1509, 1561, 1619
BsaWI	WCCGGW	1 cut(s)	1589
BsaXI	ACNNNNNCTCC	2 cut(s)	1775, 1805
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 182, 1021, 1554
Bse1I	ACTGG	3 cut(s)	41, 200, 708
Bse3DI	GCAATG	3 cut(s)	783, 882, 1783
Bse8I	GATNNNNATC	2 cut(s)	30, 1319
BseBI	CCWGG	1 cut(s)	1290
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	8 cut(s)	673, 1080, 1280, 1366, 1384, 1509, 1561, 1619
BseGI	GGATG	5 cut(s)	444, 472, 1764, 1885, 1915
BseJI	GATNNNNATC	2 cut(s)	30, 1319
BseLI	CCNNNNNNNGG	4 cut(s)	97, 182, 1021, 1554
BseMI	GCAATG	3 cut(s)	783, 882, 1783
BseMII	CTCAG	6 cut(s)	638, 777, 921, 998, 1011, 1896
BseNI	ACTGG	3 cut(s)	41, 200, 708
BseRI	GAGGAG	9 cut(s)	101, 725, 951, 954, 957, 960, 963, 966, 969
BseSI	GKGCMC	1 cut(s)	1015
BseXI	GCAGC	8 cut(s)	113, 493, 694, 800, 905, 985, 1297, 1731
BseYI	CCCAGC	2 cut(s)	1015, 1600
BsgI	GTGCAG	1 cut(s)	992
BshFI	GGCC	5 cut(s)	303, 343, 1013, 1346, 1499
BshVI	ATCGAT	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	1413
BsiHKCI	CYCGRG	2 cut(s)	623, 1280
BsiSI	CCGG	6 cut(s)	638, 1281, 1368, 1511, 1590, 1619
BsiWI	CGTACG	1 cut(s)	69
BslFI	GGGAC	2 cut(s)	1492, 1726
BslI	CCNNNNNNNGG	4 cut(s)	97, 182, 1021, 1554
BsmAI	GTCTC	1 cut(s)	1467
BsmFI	GGGAC	2 cut(s)	1492, 1726
BsmI	GAATGC	1 cut(s)	1639
BsnI	GGCC	5 cut(s)	303, 343, 1013, 1346, 1499
Bso31I	GGTCTC	1 cut(s)	1467
BsoBI	CYCGRG	2 cut(s)	623, 1280
Bsp120I	GGGCCC	1 cut(s)	1011
Bsp1286I	GDGCHC	3 cut(s)	859, 1015, 1413
Bsp143I	GATC	4 cut(s)	25, 214, 267, 1317
Bsp19I	CCATGG	1 cut(s)	1384
BspACI	CCGC	1 cut(s)	1646
BspANI	GGCC	5 cut(s)	303, 343, 1013, 1346, 1499
BspCNI	CTCAG	6 cut(s)	639, 776, 922, 999, 1012, 1897
BspDI	ATCGAT	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	6 cut(s)	90, 1013, 1014, 1039, 1078, 1559
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	1467
BsrDI	GCAATG	3 cut(s)	783, 882, 1783
BsrI	ACTGG	3 cut(s)	41, 200, 708
BssECI	CCNNGG	8 cut(s)	673, 1080, 1280, 1366, 1384, 1509, 1561, 1619
BssMI	GATC	4 cut(s)	25, 214, 267, 1317
BssNI	GRCGYC	1 cut(s)	805
BssT1I	CCWWGG	2 cut(s)	1384, 1561
Bst2UI	CCWGG	1 cut(s)	1290
Bst4CI	ACNGT	4 cut(s)	313, 757, 1378, 1827
Bst6I	CTCTTC	4 cut(s)	993, 1203, 1668, 1864
BstACI	GRCGYC	1 cut(s)	805
BstAPI	GCANNNNNTGC	1 cut(s)	1448
BstC8I	GCNNGC	4 cut(s)	643, 712, 793, 1629
BstDSI	CCRYGG	2 cut(s)	1080, 1384
BstEII	GGTNACC	1 cut(s)	1388
BstF5I	GGATG	5 cut(s)	444, 472, 1764, 1885, 1915
BstH2I	RGCGCY	1 cut(s)	669
BstHHI	GCGC	1 cut(s)	668
BstKTI	GATC	4 cut(s)	28, 217, 270, 1320
BstMAI	GTCTC	1 cut(s)	1467
BstMBI	GATC	4 cut(s)	25, 214, 267, 1317
BstMWI	GCNNNNNNNGC	6 cut(s)	46, 1235, 1448, 1643, 1744, 1773
BstNI	CCWGG	1 cut(s)	1290
BstNSI	RCATGY	1 cut(s)	795
BstPI	GGTNACC	1 cut(s)	1388
BstSCI	CCNGG	6 cut(s)	1279, 1280, 1288, 1366, 1509, 1618
BstSFI	CTRYAG	1 cut(s)	1354
BstSLI	GKGCMC	1 cut(s)	1015
BstV1I	GCAGC	8 cut(s)	113, 493, 694, 800, 905, 985, 1297, 1731
BstV2I	GAAGAC	2 cut(s)	429, 1392
BstXI	CCANNNNNNTGG	3 cut(s)	148, 554, 591
Bsu15I	ATCGAT	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	1834
BsuRI	GGCC	5 cut(s)	303, 343, 1013, 1346, 1499
BsuTUI	ATCGAT	1 cut(s)	273
BtgI	CCRYGG	2 cut(s)	1080, 1384
BtgZI	GCGATG	1 cut(s)	730
BtsCI	GGATG	5 cut(s)	444, 472, 1764, 1885, 1915
BtsI	GCAGTG	2 cut(s)	141, 1929
BtsIMutI	CAGTG	6 cut(s)	34, 141, 559, 701, 771, 1929
BveI	ACCTGC	1 cut(s)	191
Cac8I	GCNNGC	4 cut(s)	643, 712, 793, 1629
CaiI	CAGNNNCTG	1 cut(s)	770
CciI	TCATGA	1 cut(s)	321
CfoI	GCGC	1 cut(s)	668
Cfr13I	GGNCC	7 cut(s)	88, 341, 883, 1011, 1012, 1038, 1077
Cfr9I	CCCGGG	1 cut(s)	1280
ClaI	ATCGAT	1 cut(s)	273
CseI	GACGC	3 cut(s)	290, 307, 813
Csp6I	GTAC	4 cut(s)	70, 394, 839, 1379
CviQI	GTAC	4 cut(s)	70, 394, 839, 1379
DpnI	GATC	4 cut(s)	27, 216, 269, 1319
DpnII	GATC	4 cut(s)	25, 214, 267, 1317
DrdI	GACNNNNNNGTC	1 cut(s)	627
DseDI	GACNNNNNNGTC	1 cut(s)	627
Eam1104I	CTCTTC	4 cut(s)	993, 1203, 1668, 1864
EarI	CTCTTC	4 cut(s)	993, 1203, 1668, 1864
Eco130I	CCWWGG	2 cut(s)	1384, 1561
Eco24I	GRGCYC	2 cut(s)	859, 1015
Eco31I	GGTCTC	1 cut(s)	1467
Eco47I	GGWCC	4 cut(s)	88, 883, 1038, 1077
Eco47III	AGCGCT	1 cut(s)	667
Eco57I	CTGAAG	2 cut(s)	918, 1760
Eco88I	CYCGRG	2 cut(s)	623, 1280
Eco91I	GGTNACC	1 cut(s)	1388
EcoO109I	RGGNCCY	3 cut(s)	1011, 1012, 1038
EcoO65I	GGTNACC	1 cut(s)	1388
EcoRI	GAATTC	2 cut(s)	442, 476
EcoRII	CCWGG	1 cut(s)	1288
EcoT14I	CCWWGG	2 cut(s)	1384, 1561
EcoT38I	GRGCYC	2 cut(s)	859, 1015
ErhI	CCWWGG	2 cut(s)	1384, 1561
FaqI	GGGAC	2 cut(s)	1492, 1726
FauNDI	CATATG	1 cut(s)	22
FbaI	TGATCA	3 cut(s)	25, 214, 1317
FblI	GTMKAC	1 cut(s)	259
Fnu4HI	GCNGC	9 cut(s)	102, 507, 708, 789, 894, 974, 1286, 1647, 1745
FokI	GGATG	5 cut(s)	451, 479, 1771, 1892, 1922
FriOI	GRGCYC	2 cut(s)	859, 1015
Fsp4HI	GCNGC	9 cut(s)	102, 507, 708, 789, 894, 974, 1286, 1647, 1745
FspBI	CTAG	8 cut(s)	351, 683, 851, 1254, 1415, 1562, 1869, 1893
GlaI	GCGC	1 cut(s)	667
GluI	GCNGC	9 cut(s)	102, 507, 708, 789, 894, 974, 1286, 1647, 1745
GsaI	CCCAGC	2 cut(s)	1019, 1604
HaeII	RGCGCY	1 cut(s)	669
HaeIII	GGCC	5 cut(s)	303, 343, 1013, 1346, 1499
HapII	CCGG	6 cut(s)	638, 1281, 1368, 1511, 1590, 1619
HgaI	GACGC	3 cut(s)	290, 307, 813
HhaI	GCGC	1 cut(s)	668
Hin1I	GRCGYC	1 cut(s)	805
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HindIII	AAGCTT	1 cut(s)	1246
HinfI	GANTC	1 cut(s)	621
HpaII	CCGG	6 cut(s)	638, 1281, 1368, 1511, 1590, 1619
HphI	GGTGA	8 cut(s)	20, 422, 851, 1250, 1382, 1579, 1666, 1697
Hpy166II	GTNNAC	6 cut(s)	260, 358, 371, 1657, 1680, 1813
Hpy188I	TCNGA	4 cut(s)	88, 658, 677, 1906
Hpy188III	TCNNGA	3 cut(s)	149, 218, 322
Hpy8I	GTNNAC	6 cut(s)	260, 358, 371, 1657, 1680, 1813
Hpy99I	CGWCG	2 cut(s)	97, 807
HpyAV	CCTTC	6 cut(s)	1140, 1201, 1510, 1702, 1721, 1825
HpyCH4III	ACNGT	4 cut(s)	313, 757, 1378, 1827
HpyCH4IV	ACGT	3 cut(s)	72, 1407, 1535
HpyCH4V	TGCA	8 cut(s)	180, 509, 714, 788, 875, 973, 1481, 1637
HpyF10VI	GCNNNNNNNGC	6 cut(s)	46, 1235, 1448, 1643, 1744, 1773
HpySE526I	ACGT	3 cut(s)	72, 1407, 1535
Hsp92I	GRCGYC	1 cut(s)	805
HspAI	GCGC	1 cut(s)	666
Ksp22I	TGATCA	3 cut(s)	25, 214, 1317
Kzo9I	GATC	4 cut(s)	25, 214, 267, 1317
LmnI	GCTCC	3 cut(s)	1182, 1416, 1557
Lsp1109I	GCAGC	8 cut(s)	113, 493, 694, 800, 905, 985, 1297, 1731
LweI	GCATC	1 cut(s)	1870
MaeI	CTAG	8 cut(s)	351, 683, 851, 1254, 1415, 1562, 1869, 1893
MaeII	ACGT	3 cut(s)	72, 1407, 1535
MaeIII	GTNAC	6 cut(s)	751, 829, 1161, 1256, 1388, 1927
MalI	GATC	4 cut(s)	27, 216, 269, 1319
MboI	GATC	4 cut(s)	25, 214, 267, 1317
MfeI	CAATTG	2 cut(s)	154, 887
MhlI	GDGCHC	3 cut(s)	859, 1015, 1413
MlyI	GAGTC	1 cut(s)	615
MmeI	TCCRAC	4 cut(s)	681, 975, 1428, 1639
MroXI	GAANNNNTTC	1 cut(s)	476
MseI	TTAA	3 cut(s)	1269, 1373, 1463
MslI	CAYNNNNRTG	4 cut(s)	175, 764, 924, 1263
MspA1I	CMGCKG	2 cut(s)	896, 1019
MspI	CCGG	6 cut(s)	638, 1281, 1368, 1511, 1590, 1619
MspR9I	CCNGG	6 cut(s)	1281, 1282, 1290, 1368, 1511, 1620
MunI	CAATTG	2 cut(s)	154, 887
Mva1269I	GAATGC	1 cut(s)	1639
MvaI	CCWGG	1 cut(s)	1290
MwoI	GCNNNNNNNGC	6 cut(s)	46, 1235, 1448, 1643, 1744, 1773
NciI	CCSGG	5 cut(s)	1281, 1282, 1368, 1511, 1620
NcoI	CCATGG	1 cut(s)	1384
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	4 cut(s)	25, 214, 267, 1317
NlaIV	GGNNCC	6 cut(s)	90, 1013, 1014, 1039, 1078, 1559
NmuCI	GTSAC	5 cut(s)	751, 1161, 1256, 1388, 1927
NspI	RCATGY	1 cut(s)	795
PaeI	GCATGC	1 cut(s)	795
PaeR7I	CTCGAG	1 cut(s)	623
PagI	TCATGA	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	1728
PctI	GAATGC	1 cut(s)	1639
PdmI	GAANNNNTTC	1 cut(s)	476
Pfl23II	CGTACG	1 cut(s)	69
PkrI	GCNGC	9 cut(s)	103, 508, 709, 790, 895, 975, 1287, 1648, 1746
PleI	GAGTC	1 cut(s)	615
PpsI	GAGTC	1 cut(s)	615
PpuMI	RGGWCCY	1 cut(s)	1038
Psp5II	RGGWCCY	1 cut(s)	1038
Psp6I	CCWGG	1 cut(s)	1288
PspEI	GGTNACC	1 cut(s)	1388
PspFI	CCCAGC	2 cut(s)	1015, 1600
PspGI	CCWGG	1 cut(s)	1288
PspLI	CGTACG	1 cut(s)	69
PspN4I	GGNNCC	6 cut(s)	90, 1013, 1014, 1039, 1078, 1559
PspOMI	GGGCCC	1 cut(s)	1011
PspPI	GGNCC	7 cut(s)	88, 341, 883, 1011, 1012, 1038, 1077
PspPPI	RGGWCCY	1 cut(s)	1038
PspXI	VCTCGAGB	1 cut(s)	623
PstNI	CAGNNNCTG	1 cut(s)	770
PvuII	CAGCTG	2 cut(s)	896, 1019
RsaI	GTAC	4 cut(s)	71, 395, 840, 1380
RsaNI	GTAC	4 cut(s)	70, 394, 839, 1379
RseI	CAYNNNNRTG	4 cut(s)	175, 764, 924, 1263
SaqAI	TTAA	3 cut(s)	1269, 1373, 1463
SatI	GCNGC	9 cut(s)	102, 507, 708, 789, 894, 974, 1286, 1647, 1745
Sau3AI	GATC	4 cut(s)	25, 214, 267, 1317
Sau96I	GGNCC	7 cut(s)	88, 341, 883, 1011, 1012, 1038, 1077
SchI	GAGTC	1 cut(s)	615
ScrFI	CCNGG	6 cut(s)	1281, 1282, 1290, 1368, 1511, 1620
SduI	GDGCHC	3 cut(s)	859, 1015, 1413
SfaNI	GCATC	1 cut(s)	1870
SfcI	CTRYAG	1 cut(s)	1354
Sfr274I	CTCGAG	1 cut(s)	623
SinI	GGWCC	4 cut(s)	88, 883, 1038, 1077
SlaI	CTCGAG	1 cut(s)	623
SmaI	CCCGGG	1 cut(s)	1282
SmiMI	CAYNNNNRTG	4 cut(s)	175, 764, 924, 1263
SmlI	CTYRAG	3 cut(s)	113, 623, 1394
SmoI	CTYRAG	3 cut(s)	113, 623, 1394
SphI	GCATGC	1 cut(s)	795
SsiI	CCGC	1 cut(s)	1646
SspMI	CTAG	8 cut(s)	351, 683, 851, 1254, 1415, 1562, 1869, 1893
StyD4I	CCNGG	6 cut(s)	1279, 1280, 1288, 1366, 1509, 1618
StyI	CCWWGG	2 cut(s)	1384, 1561
TaaI	ACNGT	4 cut(s)	313, 757, 1378, 1827
TaiI	ACGT	3 cut(s)	75, 1410, 1538
TaqI	TCGA	4 cut(s)	248, 273, 624, 798
TaqII	GACCGA	1 cut(s)	1562
TatI	WGTACW	1 cut(s)	838
TauI	GCSGC	1 cut(s)	1649
Tru1I	TTAA	3 cut(s)	1269, 1373, 1463
Tru9I	TTAA	3 cut(s)	1269, 1373, 1463
TscAI	CASTG	6 cut(s)	41, 148, 559, 708, 771, 1936
TseFI	GTSAC	5 cut(s)	751, 1161, 1256, 1388, 1927
TseI	GCWGC	8 cut(s)	101, 506, 707, 788, 893, 973, 1285, 1744
Tsp45I	GTSAC	5 cut(s)	751, 1161, 1256, 1388, 1927
TspGWI	ACGGA	3 cut(s)	110, 203, 1069
TspMI	CCCGGG	1 cut(s)	1280
TspRI	CASTG	6 cut(s)	41, 148, 559, 708, 771, 1936
VpaK11BI	GGWCC	4 cut(s)	88, 883, 1038, 1077
XceI	RCATGY	1 cut(s)	795
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1246, 1296
XhoI	CTCGAG	1 cut(s)	623
XmaI	CCCGGG	1 cut(s)	1280
XmaJI	CCTAGG	1 cut(s)	1561
XmiI	GTMKAC	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	476
XspI	CTAG	8 cut(s)	351, 683, 851, 1254, 1415, 1562, 1869, 1893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.