Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011072

Physical Location & Seq

Genomic Coordinates Forward (+)

19050298 .. 19052094

Gene Structure 1797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAAAGGGCTTACGAGGCTTCTCAATTCTCTTTCGCGACATACAGCTTCCGTAACTTGTTCTCCATCTTCTTCTTCTCTTCTGATATCACGTCGCTCTCTGTTTATCTCGGCGGCGACACACTTTCCGGTGAATTTCTCGGAGTCGATAACAACTAATGCTTCTCGTAACTGTTCGAGATCTTCTTCATTTCCCTTCAATTGGATCGAGCAAAGGAGGACAATGTTTATCCAAACACAATCAACACCAAACCCCTCTTCTCTAATGTTTAGTCCTGGTAAACCAGTTATGGAGATTGGAAGTGCTGACTTCCCTAATTCTCGCTCTGCTATGAGTTCACCTTTAGCTAAAGCCATTTTCGCCATTGATGGTGTAGTTCGAGTTTTCTATGGGTCAGATTTTGTTACTGTAACAAAGTCAGATGATGTAACATGGGATATACTCAAGCCTGATATCTTTGCAGTGGTAATGGACTTTTACTCTTCTGGTCAGCCTTTGTTTCTCGACTCACAAGCTACAGCTGCCAAGGATACCGCTATTCATGAGGATGACTCTGAAACTGTAGCAATGATTAAGGAACTCTTGGAGACGCGTATCCGACCATCAGTCCAAGATGATGGAGGGGACATCGAGTATTGTGGATTCGATACGGAAACTGGTATAGTGAAGCTTAGAATGCAAGGAGCTTGTAGCGGTTGTCCAAGTTCATCTGTTACTTTGAAATCCGGAATTGAGAATATGCTTATGCATTATGTTTCCGAGGTCAAAGGTGTTGAGCAAGAATTCGATGGTGAAGAGGAGGGAACATCTTCTGGTCCAATGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005198 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nfu_N NifU

Protein Analysis

275

Amino Acids

29.97

Weight (kDa)

4.87

Isoelectric Point (pI)

63.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nfu_N	PF08712	77 - 163	6.8e-30	Scaffold protein Nfu/NifU N terminal
NifU	PF01106	191 - 259	4.4e-28	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51390 AT3G20970 AT3G20970
fragaria_vesca	FvH4_1g23510 FvH4_1g23510
malus_domestica	MD04G1028700.v1.1
prunus_persica	Prupe.2G079800_v2.0.a1
pyrus_communis	pycom04g02500
rosa_chinensis	RchiOBHm_Chr2g0118911
rosa_laevigata	RLG00000018435
rosa_multiflora	Rmu_sc0001653.1_g000031 Rmu_sc0003492.1_g000006
rosa_roxburghii	Rroxscaffold_2G00124590 Rroxscaffold_2G00144600
rosa_rugosa	Rorug02G0219500
rosa_samantha	Rh2AG276800 Rh2BG288500 Rh2DG283800 Rh2DG302900
rosa_wichuraiana	Rw2G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	37, 592
AccIII	TCCGGA	1 cut(s)	725
AciI	CCGC	3 cut(s)	113, 534, 693
AclWI	GGATC	1 cut(s)	212
AcsI	RAATTY	2 cut(s)	133, 782
AfiI	CCNNNNNNNGG	1 cut(s)	201
AflIII	ACRYGT	1 cut(s)	590
AgsI	TTSAA	2 cut(s)	199, 721
AhdI	GACNNNNNGTC	1 cut(s)	605
AjiI	CACGTC	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AluBI	AGCT	6 cut(s)	47, 347, 515, 521, 670, 686
AluI	AGCT	6 cut(s)	47, 347, 515, 521, 670, 686
Alw26I	GTCTC	1 cut(s)	581
AlwI	GGATC	1 cut(s)	212
Aor13HI	TCCGGA	1 cut(s)	725
ApeKI	GCWGC	1 cut(s)	521
ApoI	RAATTY	2 cut(s)	133, 782
Asp700I	GAANNNNTTC	1 cut(s)	808
AspS9I	GGNCC	1 cut(s)	815
AsuHPI	GGTGA	3 cut(s)	142, 330, 803
AvaII	GGWCC	1 cut(s)	815
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	5 cut(s)	73, 362, 610, 611, 782
BciT130I	CCWGG	1 cut(s)	276
BciVI	GTATCC	2 cut(s)	523, 605
BcoDI	GTCTC	1 cut(s)	581
BfmI	CTRYAG	2 cut(s)	516, 561
BfuI	GTATCC	2 cut(s)	523, 605
BglII	AGATCT	1 cut(s)	179
BisI	GCNGC	2 cut(s)	114, 522
BlsI	GCNGC	2 cut(s)	115, 523
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	815
BmeRI	GACNNNNNGTC	1 cut(s)	605
BmgBI	CACGTC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	815
BmrFI	CCNGG	1 cut(s)	276
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
BpuEI	CTTGAG	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	525, 759
BsaWI	WCCGGW	2 cut(s)	127, 725
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	2 cut(s)	284, 661
Bse3DI	GCAATG	1 cut(s)	573
BseAI	TCCGGA	1 cut(s)	725
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	525, 759
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMI	GCAATG	1 cut(s)	573
BseNI	ACTGG	2 cut(s)	284, 661
BseRI	GAGGAG	1 cut(s)	812
BseXI	GCAGC	1 cut(s)	508
Bsh1236I	CGCG	2 cut(s)	37, 592
BsiSI	CCGG	2 cut(s)	128, 726
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	581
BsmBI	CGTCTC	1 cut(s)	581
BsmFI	GGGAC	1 cut(s)	638
BsmI	GAATGC	1 cut(s)	681
Bsp13I	TCCGGA	1 cut(s)	725
Bsp143I	GATC	2 cut(s)	179, 204
Bsp68I	TCGCGA	1 cut(s)	37
BspACI	CCGC	3 cut(s)	113, 534, 693
BspEI	TCCGGA	1 cut(s)	725
BspFNI	CGCG	2 cut(s)	37, 592
BspHI	TCATGA	1 cut(s)	541
BspPI	GGATC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	284, 661
BssECI	CCNNGG	2 cut(s)	525, 759
BssMI	GATC	2 cut(s)	179, 204
BssT1I	CCWWGG	1 cut(s)	525
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	173, 409, 562
Bst6I	CTCTTC	4 cut(s)	84, 262, 487, 789
BstDEI	CTNAG	1 cut(s)	671
BstF5I	GGATG	1 cut(s)	553
BstFNI	CGCG	2 cut(s)	37, 592
BstKTI	GATC	2 cut(s)	182, 207
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	2 cut(s)	179, 204
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 359, 521, 676
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	2 cut(s)	516, 561
BstUI	CGCG	2 cut(s)	37, 592
BstV1I	GCAGC	1 cut(s)	508
BstX2I	RGATCY	1 cut(s)	179
BstXI	CCANNNNNNTGG	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	179
BsuI	GTATCC	2 cut(s)	523, 605
BtrI	CACGTC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
BtuMI	TCGCGA	1 cut(s)	37
CciI	TCATGA	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	815
CseI	GACGC	1 cut(s)	598
CviAII	CATG	2 cut(s)	432, 542
DdeI	CTNAG	1 cut(s)	671
DpnI	GATC	2 cut(s)	181, 206
DpnII	GATC	2 cut(s)	179, 204
DriI	GACNNNNNGTC	1 cut(s)	605
Eam1104I	CTCTTC	4 cut(s)	84, 262, 487, 789
Eam1105I	GACNNNNNGTC	1 cut(s)	605
EarI	CTCTTC	4 cut(s)	84, 262, 487, 789
Eco130I	CCWWGG	1 cut(s)	525
Eco32I	GATATC	2 cut(s)	87, 454
Eco47I	GGWCC	1 cut(s)	815
EcoRI	GAATTC	1 cut(s)	782
EcoRII	CCWGG	1 cut(s)	274
EcoRV	GATATC	2 cut(s)	87, 454
EcoT14I	CCWWGG	1 cut(s)	525
EcoT22I	ATGCAT	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	525
Esp3I	CGTCTC	1 cut(s)	581
FaeI	CATG	2 cut(s)	435, 545
FalI	AAGNNNNNCTT	2 cut(s)	566, 598
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	2 cut(s)	431, 541
Fnu4HI	GCNGC	2 cut(s)	114, 522
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	2 cut(s)	114, 522
GluI	GCNGC	2 cut(s)	114, 522
HapII	CCGG	2 cut(s)	128, 726
HgaI	GACGC	1 cut(s)	598
Hin1II	CATG	2 cut(s)	435, 545
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	4 cut(s)	143, 506, 551, 642
HpaII	CCGG	2 cut(s)	128, 726
HphI	GGTGA	3 cut(s)	142, 330, 803
Hpy166II	GTNNAC	2 cut(s)	281, 338
Hpy188I	TCNGA	7 cut(s)	84, 142, 397, 421, 556, 599, 760
Hpy188III	TCNNGA	5 cut(s)	36, 177, 503, 542, 726
Hpy8I	GTNNAC	2 cut(s)	281, 338
Hpy99I	CGWCG	1 cut(s)	96
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	3 cut(s)	173, 409, 562
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	3 cut(s)	461, 679, 748
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 359, 521, 676
HpyF3I	CTNAG	1 cut(s)	671
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	2 cut(s)	435, 545
Kpn2I	TCCGGA	1 cut(s)	725
Kzo9I	GATC	2 cut(s)	179, 204
LmnI	GCTCC	1 cut(s)	683
LpnPI	CCDG	9 cut(s)	141, 261, 288, 297, 462, 471, 642, 739, 798
Lsp1109I	GCAGC	1 cut(s)	508
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	6 cut(s)	52, 167, 403, 409, 427, 712
MalI	GATC	2 cut(s)	181, 206
MboI	GATC	2 cut(s)	179, 204
MfeI	CAATTG	1 cut(s)	199
MflI	RGATCY	1 cut(s)	179
MluCI	AATT	6 cut(s)	25, 133, 199, 316, 729, 782
MluI	ACGCGT	1 cut(s)	590
MlyI	GAGTC	3 cut(s)	152, 500, 545
MmeI	TCCRAC	1 cut(s)	622
MnlI	CCTC	8 cut(s)	9, 210, 265, 538, 614, 754, 790, 793
Mph1103I	ATGCAT	1 cut(s)	750
MroI	TCCGGA	1 cut(s)	725
MroXI	GAANNNNTTC	1 cut(s)	808
MseI	TTAA	1 cut(s)	573
MslI	CAYNNNNRTG	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	2 cut(s)	128, 726
MspR9I	CCNGG	1 cut(s)	276
MunI	CAATTG	1 cut(s)	199
Mva1269I	GAATGC	1 cut(s)	681
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	2 cut(s)	37, 592
MwoI	GCNNNNNNNGC	4 cut(s)	16, 359, 521, 676
NdeII	GATC	2 cut(s)	179, 204
NlaIII	CATG	2 cut(s)	435, 545
NmeAIII	GCCGAG	1 cut(s)	89
NruI	TCGCGA	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	750
PagI	TCATGA	1 cut(s)	541
PctI	GAATGC	1 cut(s)	681
PdmI	GAANNNNTTC	1 cut(s)	808
PfeI	GAWTC	1 cut(s)	642
PkrI	GCNGC	2 cut(s)	115, 523
PleI	GAGTC	3 cut(s)	151, 500, 545
PpsI	GAGTC	3 cut(s)	151, 500, 545
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	815
PsuI	RGATCY	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	521
RruI	TCGCGA	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	546
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	2 cut(s)	114, 522
Sau3AI	GATC	2 cut(s)	179, 204
Sau96I	GGNCC	1 cut(s)	815
SchI	GAGTC	3 cut(s)	152, 500, 545
ScrFI	CCNGG	1 cut(s)	276
SfcI	CTRYAG	2 cut(s)	516, 561
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	6 cut(s)	25, 133, 199, 316, 729, 782
SsiI	CCGC	3 cut(s)	113, 534, 693
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	3 cut(s)	173, 409, 562
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	8 cut(s)	146, 176, 207, 379, 504, 630, 645, 786
TasI	AATT	6 cut(s)	25, 133, 199, 316, 729, 782
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	642
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	1 cut(s)	468
TseI	GCWGC	1 cut(s)	521
TspDTI	ATGAA	4 cut(s)	17, 177, 530, 696
TspGWI	ACGGA	2 cut(s)	40, 665
TspRI	CASTG	1 cut(s)	468
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	2 cut(s)	133, 782
XmnI	GAANNNNTTC	1 cut(s)	808
Zsp2I	ATGCAT	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.