Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011072

Physical Location & Seq

Genomic Coordinates Reverse (-)

36209519 .. 36215923

Gene Structure 6405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG302900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGGGGTTTGGCAAGATTGATCGGACGCAGTCTTTCATCTCACAAAAGATTCCAACCTACTACCTTCCGCTGCTTCTCTCGCCGGACCTATTTCCTCTCTGCTTATTTGGGTCGCCGTATCTCCCCCTCTTCTTCTTCTTCTTCTTCTTCTCCTTTCGCTTCTACAAAATGGGGCCTTCTTTCAGGGCAGAGGAGAAGCATGTTCATACAAACACAGTCCACACCCAATCCTGCATCTCTTATGTTTTACCCCGGGAAGCCTGTTATGGAAGTTGGCAGTGCAGACTTCCCGAATGCCCGGTCCGCCATGAATTCCCCACTGGCCAAGGCCCTTTATGGAATTGATGGTGTCACTCGAGTGTTTTTTGGATCAGATTTTGTTACTGTAACTAAGTCAGAAGATACTTCATGGGATCTTTTGAAGCCAGAAATCTTTGCAGCAATCATGGACTTTTACTCTTCTGGGGAGCCACTCTTTCTCGACTCAAAAGCTGCGGCAGCAAAGGACACTGCTATTAATGAGGATGATTCAGAAATAGTTGCCATGATCAAAGAATTGTTGGAGACTCGCATCAGACCAGCAGTTCAAGATGATGGCGGGGACATTGAGTATAAGGGATTTGATCCAGAAACCGGAATAGTTAAACTGAGCATGCAAGGAGCGTGTAGTGGCTGCCCAAGCTCATCAGTCACCCTGAAATCTGGCATTGAAAATATGCTCATGCATTATGTACCTGAGGTAACAAATGACAATCATGCTTTGATTCTCAAGAATGTATATATCTTTTGGACTAGAAGCCTGGTCTGTGGACTAACTGTAGATGCGCCATGCGCGTGCACACACACACAACAACCATTTTCTTATATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005198 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nfu_N NifU

Protein Analysis

291

Amino Acids

31.92

Weight (kDa)

7.59

Isoelectric Point (pI)

58.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nfu_N	PF08712	70 - 156	5.9e-31	Scaffold protein Nfu/NifU N terminal
NifU	PF01106	184 - 249	1.6e-27	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51390 AT3G20970 AT3G20970
fragaria_vesca	FvH4_1g23510 FvH4_1g23510
malus_domestica	MD04G1028700.v1.1
prunus_persica	Prupe.2G079800_v2.0.a1
pyrus_communis	pycom04g02500
rosa_chinensis	RchiOBHm_Chr2g0118911
rosa_laevigata	RLG00000018435
rosa_multiflora	Rmu_sc0001653.1_g000031 Rmu_sc0003492.1_g000006
rosa_roxburghii	Rroxscaffold_2G00124590 Rroxscaffold_2G00144600
rosa_rugosa	Rorug02G0219500
rosa_samantha	Rh2AG276800 Rh2BG288500 Rh2DG283800 Rh2DG302900
rosa_wichuraiana	Rw2G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	836
AciI	CCGC	4 cut(s)	70, 306, 497, 600
AclWI	GGATC	3 cut(s)	379, 423, 620
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	313
AfaI	GTAC	1 cut(s)	735
AfiI	CCNNNNNNNGG	1 cut(s)	635
AgsI	TTSAA	3 cut(s)	424, 590, 713
AjnI	CCWGG	1 cut(s)	801
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	2 cut(s)	494, 684
AluI	AGCT	2 cut(s)	494, 684
Alw21I	GWGCWC	1 cut(s)	842
Alw26I	GTCTC	1 cut(s)	560
Alw44I	GTGCAC	1 cut(s)	838
AlwI	GGATC	3 cut(s)	379, 423, 620
Ama87I	CYCGRG	2 cut(s)	254, 357
AoxI	GGCC	3 cut(s)	175, 324, 330
ApaLI	GTGCAC	1 cut(s)	838
ApeKI	GCWGC	5 cut(s)	72, 440, 494, 500, 675
ApoI	RAATTY	1 cut(s)	313
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AseI	ATTAAT	1 cut(s)	519
AspLEI	GCGC	2 cut(s)	829, 836
AspS9I	GGNCC	4 cut(s)	87, 175, 303, 331
AsuC2I	CCSGG	3 cut(s)	255, 256, 301
AsuHPI	GGTGA	1 cut(s)	685
AvaI	CYCGRG	2 cut(s)	254, 357
AvaII	GGWCC	2 cut(s)	87, 303
AxyI	CCTNAGG	1 cut(s)	738
BaeGI	GKGCMC	1 cut(s)	842
BalI	TGGCCA	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	842
BbvI	GCAGC	5 cut(s)	59, 452, 481, 512, 662
BccI	CCATC	2 cut(s)	341, 590
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	803
BclI	TGATCA	1 cut(s)	549
BcnI	CCSGG	3 cut(s)	255, 256, 301
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	1 cut(s)	795
BfmI	CTRYAG	1 cut(s)	819
BisI	GCNGC	6 cut(s)	73, 441, 495, 498, 501, 676
BlsI	GCNGC	6 cut(s)	74, 442, 496, 499, 502, 677
Bme1390I	CCNGG	4 cut(s)	255, 256, 301, 803
Bme18I	GGWCC	2 cut(s)	87, 303
BmeT110I	CYCGRG	2 cut(s)	254, 357
BmgT120I	GGNCC	4 cut(s)	87, 175, 303, 331
BmiI	GGNNCC	2 cut(s)	176, 471
BmrFI	CCNGG	4 cut(s)	255, 256, 301, 803
BmsI	GCATC	3 cut(s)	245, 582, 814
BpuEI	CTTGAG	1 cut(s)	755
BpuMI	CCSGG	3 cut(s)	255, 256, 301
BsaJI	CCNNGG	3 cut(s)	253, 254, 327
BsaWI	WCCGGW	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse1I	ACTGG	1 cut(s)	327
Bse21I	CCTNAGG	1 cut(s)	738
BseBI	CCWGG	1 cut(s)	803
BseDI	CCNNGG	3 cut(s)	253, 254, 327
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMII	CTCAG	2 cut(s)	641, 729
BseNI	ACTGG	1 cut(s)	327
BseRI	GAGGAG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	842
BseXI	GCAGC	5 cut(s)	59, 452, 481, 512, 662
BsgI	GTGCAG	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	836
BshFI	GGCC	3 cut(s)	177, 326, 332
BsiHKAI	GWGCWC	1 cut(s)	842
BsiHKCI	CYCGRG	2 cut(s)	254, 357
BsiSI	CCGG	4 cut(s)	85, 255, 301, 636
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	1 cut(s)	560
BsmFI	GGGAC	1 cut(s)	617
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	3 cut(s)	177, 326, 332
BsoBI	CYCGRG	2 cut(s)	254, 357
Bsp1286I	GDGCHC	1 cut(s)	842
Bsp143I	GATC	5 cut(s)	21, 371, 415, 549, 625
BspACI	CCGC	4 cut(s)	70, 306, 497, 600
BspANI	GGCC	3 cut(s)	177, 326, 332
BspCNI	CTCAG	2 cut(s)	642, 730
BspFNI	CGCG	1 cut(s)	836
BspLI	GGNNCC	2 cut(s)	176, 471
BspPI	GGATC	3 cut(s)	379, 423, 620
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	3 cut(s)	253, 254, 327
BssMI	GATC	5 cut(s)	21, 371, 415, 549, 625
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	803
Bst4CI	ACNGT	3 cut(s)	219, 388, 820
Bst6I	CTCTTC	2 cut(s)	136, 466
BstC8I	GCNNGC	2 cut(s)	656, 838
BstDEI	CTNAG	3 cut(s)	393, 650, 738
BstF5I	GGATG	1 cut(s)	532
BstFNI	CGCG	1 cut(s)	836
BstHHI	GCGC	2 cut(s)	829, 836
BstKTI	GATC	5 cut(s)	24, 374, 418, 552, 628
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	5 cut(s)	21, 371, 415, 549, 625
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 305, 500, 681, 833
BstNI	CCWGG	1 cut(s)	803
BstNSI	RCATGY	2 cut(s)	205, 658
BstSCI	CCNGG	4 cut(s)	253, 254, 299, 801
BstSFI	CTRYAG	1 cut(s)	819
BstSLI	GKGCMC	1 cut(s)	842
BstUI	CGCG	1 cut(s)	836
BstV1I	GCAGC	5 cut(s)	59, 452, 481, 512, 662
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
Bsu36I	CCTNAGG	1 cut(s)	738
BsuRI	GGCC	3 cut(s)	177, 326, 332
BtsCI	GGATG	1 cut(s)	532
BtsI	GCAGTG	2 cut(s)	286, 510
BtsIMutI	CAGTG	3 cut(s)	286, 320, 510
Cac8I	GCNNGC	2 cut(s)	656, 838
CfoI	GCGC	2 cut(s)	829, 836
Cfr13I	GGNCC	4 cut(s)	87, 175, 303, 331
Cfr9I	CCCGGG	1 cut(s)	254
CpoI	CGGWCCG	1 cut(s)	303
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	734
CspI	CGGWCCG	1 cut(s)	303
CviAII	CATG	9 cut(s)	202, 310, 411, 448, 547, 655, 724, 758, 831
CviQI	GTAC	1 cut(s)	734
DdeI	CTNAG	3 cut(s)	393, 650, 738
DpnI	GATC	5 cut(s)	23, 373, 417, 551, 627
DpnII	GATC	5 cut(s)	21, 371, 415, 549, 625
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	136, 466
EarI	CTCTTC	2 cut(s)	136, 466
EciI	GGCGGA	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	87, 303
Eco81I	CCTNAGG	1 cut(s)	738
Eco88I	CYCGRG	2 cut(s)	254, 357
EcoO109I	RGGNCCY	2 cut(s)	175, 331
EcoRI	GAATTC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	801
EcoT14I	CCWWGG	1 cut(s)	327
EcoT22I	ATGCAT	1 cut(s)	729
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	9 cut(s)	205, 313, 414, 451, 550, 658, 727, 761, 834
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	9 cut(s)	201, 309, 410, 447, 546, 654, 723, 757, 830
FauI	CCCGC	1 cut(s)	593
FbaI	TGATCA	1 cut(s)	549
Fnu4HI	GCNGC	6 cut(s)	73, 441, 495, 498, 501, 676
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	6 cut(s)	73, 441, 495, 498, 501, 676
FspBI	CTAG	1 cut(s)	795
GlaI	GCGC	2 cut(s)	828, 835
GluI	GCNGC	6 cut(s)	73, 441, 495, 498, 501, 676
HaeIII	GGCC	3 cut(s)	177, 326, 332
HapII	CCGG	4 cut(s)	85, 255, 301, 636
HgaI	GACGC	1 cut(s)	36
HhaI	GCGC	2 cut(s)	829, 836
Hin1II	CATG	9 cut(s)	205, 313, 414, 451, 550, 658, 727, 761, 834
Hin6I	GCGC	2 cut(s)	827, 834
HinP1I	GCGC	2 cut(s)	827, 834
HinfI	GANTC	5 cut(s)	51, 485, 530, 568, 766
HpaII	CCGG	4 cut(s)	85, 255, 301, 636
HphI	GGTGA	1 cut(s)	685
Hpy166II	GTNNAC	3 cut(s)	222, 812, 840
Hpy188I	TCNGA	5 cut(s)	26, 376, 400, 535, 578
Hpy188III	TCNNGA	5 cut(s)	292, 482, 590, 629, 772
Hpy8I	GTNNAC	3 cut(s)	222, 812, 840
HpyAV	CCTTC	2 cut(s)	76, 188
HpyCH4III	ACNGT	3 cut(s)	219, 388, 820
HpyCH4V	TGCA	6 cut(s)	236, 284, 440, 658, 727, 840
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 305, 500, 681, 833
HpyF3I	CTNAG	3 cut(s)	393, 650, 738
Hsp92II	CATG	9 cut(s)	205, 313, 414, 451, 550, 658, 727, 761, 834
HspAI	GCGC	2 cut(s)	827, 834
Ksp22I	TGATCA	1 cut(s)	549
Kzo9I	GATC	5 cut(s)	21, 371, 415, 549, 625
LmnI	GCTCC	2 cut(s)	469, 662
Lsp1109I	GCAGC	5 cut(s)	59, 452, 481, 512, 662
LweI	GCATC	3 cut(s)	245, 582, 814
MaeI	CTAG	1 cut(s)	795
MaeIII	GTNAC	5 cut(s)	352, 382, 388, 691, 742
MalI	GATC	5 cut(s)	23, 373, 417, 551, 627
MboI	GATC	5 cut(s)	21, 371, 415, 549, 625
MboII	GAAGA	9 cut(s)	123, 126, 129, 132, 135, 138, 141, 413, 453
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	842
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	3 cut(s)	313, 342, 557
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	2 cut(s)	479, 562
MmeI	TCCRAC	2 cut(s)	79, 543
MnlI	CCTC	5 cut(s)	107, 139, 186, 517, 733
Mox20I	TGGCCA	1 cut(s)	326
Mph1103I	ATGCAT	1 cut(s)	729
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	3 cut(s)	519, 645, 874
MslI	CAYNNNNRTG	2 cut(s)	359, 835
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	72
MspI	CCGG	4 cut(s)	85, 255, 301, 636
MspR9I	CCNGG	4 cut(s)	255, 256, 301, 803
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	1 cut(s)	803
MvnI	CGCG	1 cut(s)	836
MwoI	GCNNNNNNNGC	5 cut(s)	81, 305, 500, 681, 833
NciI	CCSGG	3 cut(s)	255, 256, 301
NdeII	GATC	5 cut(s)	21, 371, 415, 549, 625
NlaIII	CATG	9 cut(s)	205, 313, 414, 451, 550, 658, 727, 761, 834
NlaIV	GGNNCC	2 cut(s)	176, 471
NmuCI	GTSAC	2 cut(s)	352, 691
NsiI	ATGCAT	1 cut(s)	729
NspI	RCATGY	2 cut(s)	205, 658
OliI	CACNNNNGTG	1 cut(s)	359
PaeI	GCATGC	1 cut(s)	658
PaeR7I	CTCGAG	1 cut(s)	357
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	3 cut(s)	51, 530, 766
PflFI	GACNNNGTC	1 cut(s)	30
PkrI	GCNGC	6 cut(s)	74, 442, 496, 499, 502, 677
PleI	GAGTC	2 cut(s)	479, 562
PpsI	GAGTC	2 cut(s)	479, 562
PshBI	ATTAAT	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	801
PspGI	CCWGG	1 cut(s)	801
PspN4I	GGNNCC	2 cut(s)	176, 471
PspPI	GGNCC	4 cut(s)	87, 175, 303, 331
PspXI	VCTCGAGB	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	415
PsyI	GACNNNGTC	1 cut(s)	30
RsaI	GTAC	1 cut(s)	735
RsaNI	GTAC	1 cut(s)	734
RseI	CAYNNNNRTG	2 cut(s)	359, 835
Rsr2I	CGGWCCG	1 cut(s)	303
RsrII	CGGWCCG	1 cut(s)	303
SaqAI	TTAA	3 cut(s)	519, 645, 874
SatI	GCNGC	6 cut(s)	73, 441, 495, 498, 501, 676
Sau3AI	GATC	5 cut(s)	21, 371, 415, 549, 625
Sau96I	GGNCC	4 cut(s)	87, 175, 303, 331
SchI	GAGTC	2 cut(s)	479, 562
ScrFI	CCNGG	4 cut(s)	255, 256, 301, 803
SduI	GDGCHC	1 cut(s)	842
SetI	ASST	7 cut(s)	61, 68, 92, 496, 686, 739, 744
SfaNI	GCATC	3 cut(s)	245, 582, 814
SfcI	CTRYAG	1 cut(s)	819
Sfr274I	CTCGAG	1 cut(s)	357
SinI	GGWCC	2 cut(s)	87, 303
SlaI	CTCGAG	1 cut(s)	357
SmaI	CCCGGG	1 cut(s)	256
SmiMI	CAYNNNNRTG	2 cut(s)	359, 835
SmlI	CTYRAG	2 cut(s)	357, 770
SmoI	CTYRAG	2 cut(s)	357, 770
SphI	GCATGC	1 cut(s)	658
Sse9I	AATT	3 cut(s)	313, 342, 557
SsiI	CCGC	4 cut(s)	70, 306, 497, 600
SspMI	CTAG	1 cut(s)	795
StyD4I	CCNGG	4 cut(s)	253, 254, 299, 801
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	3 cut(s)	219, 388, 820
TaqI	TCGA	2 cut(s)	358, 483
TasI	AATT	3 cut(s)	313, 342, 557
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	3 cut(s)	51, 530, 766
Tru1I	TTAA	3 cut(s)	519, 645, 874
Tru9I	TTAA	3 cut(s)	519, 645, 874
TscAI	CASTG	3 cut(s)	286, 327, 517
TseFI	GTSAC	2 cut(s)	352, 691
TseI	GCWGC	5 cut(s)	72, 440, 494, 500, 675
Tsp45I	GTSAC	2 cut(s)	352, 691
TspDTI	ATGAA	4 cut(s)	27, 196, 326, 399
TspMI	CCCGGG	1 cut(s)	254
TspRI	CASTG	3 cut(s)	286, 327, 517
Tth111I	GACNNNGTC	1 cut(s)	30
VneI	GTGCAC	1 cut(s)	838
VpaK11BI	GGWCC	2 cut(s)	87, 303
VspI	ATTAAT	1 cut(s)	519
XapI	RAATTY	1 cut(s)	313
XceI	RCATGY	2 cut(s)	205, 658
XhoI	CTCGAG	1 cut(s)	357
XmaI	CCCGGG	1 cut(s)	254
XspI	CTAG	1 cut(s)	795
Zsp2I	ATGCAT	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.