Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011072

Physical Location & Seq

Genomic Coordinates Reverse (-)

29723904 .. 29728650

Gene Structure 4747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018435

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGAGGGGTTTGGCAAGATTGATCGGACGCAGTCTTTCATCTCAGAAAAGATTCCAACCTTCTGGACCATCCACGACCTTCCGCTGCATCTCTCGCCGGACCTATTTCCTCTCTGCTTATTTGGGTCGCCGCATCTCCCCCTCTTCTTCTTCTGCTTCATCTCCATCTCCTTTCGCTTCTACAAAATGGGGCCTTCTTTCAGGGCAGAAGAGAAGCATGTTTATACAAACACAGTCCACACCCAATCCTGCATCTCTTATGTTTTACCCCGGGAAGCCTGTTATGGAAGTTGGCAGTGCGGACTTTCCGAATGCCCGGTCCGCCATGAATTCCCCACTGGCCAAAGCCCTTTATGGAATTGATGGTGTCACTCGAGTGTTTTTTGGATCAGATTTTGTTACTGTAACTAAGTCAGAAGAAACTTCATGGGATCTTTTGAAGCCAGAAATCTTTGCAGCAATCATGGACTTTTTCTCTTCTGGGGAGCCACTCTTTCTCGACTCAAAAGCTGCGGCAGCAAAGGACACAGCTATTAATGAGGATGATTCAGAAATAGTTGCCATGATCAAAGAATTGTTGGAGACTCGCATCAGACCAGCAGTTCAAGATGATGGTGGGGACATTGAGTATAAGGGATTTGATCCAGAAACCGGAATAGTTAAACTGAGCATGCAAGGAGCGTGTAGTGGCTGCCCAAGCTCATCAGTCACCCTGAAATCTGGCATTGAAAATATGCTCATGCATTATGTACCTGAGGTCAAAGGCGTGGAGCAAGAACATGATGAAGAAGATGAAGATGCAGCATTAACGGGGCATGCGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005198 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nfu_N NifU

Protein Analysis

275

Amino Acids

29.75

Weight (kDa)

5.17

Isoelectric Point (pI)

60.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nfu_N	PF08712	75 - 161	3.5e-31	Scaffold protein Nfu/NifU N terminal
NifU	PF01106	189 - 257	1.3e-28	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51390 AT3G20970 AT3G20970
fragaria_vesca	FvH4_1g23510 FvH4_1g23510
malus_domestica	MD04G1028700.v1.1
prunus_persica	Prupe.2G079800_v2.0.a1
pyrus_communis	pycom04g02500
rosa_chinensis	RchiOBHm_Chr2g0118911
rosa_laevigata	RLG00000018435
rosa_multiflora	Rmu_sc0001653.1_g000031 Rmu_sc0003492.1_g000006
rosa_roxburghii	Rroxscaffold_2G00124590 Rroxscaffold_2G00144600
rosa_rugosa	Rorug02G0219500
rosa_samantha	Rh2AG276800 Rh2BG288500 Rh2DG283800 Rh2DG302900
rosa_wichuraiana	Rw2G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	82, 130, 299, 321, 512, 818
AclWI	GGATC	3 cut(s)	394, 438, 635
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	328
AfaI	GTAC	1 cut(s)	750
AfiI	CCNNNNNNNGG	1 cut(s)	650
AgsI	TTSAA	3 cut(s)	439, 605, 728
AleI	CACNNNNGTG	1 cut(s)	374
AluBI	AGCT	3 cut(s)	509, 530, 699
AluI	AGCT	3 cut(s)	509, 530, 699
Alw26I	GTCTC	1 cut(s)	575
AlwI	GGATC	3 cut(s)	394, 438, 635
Ama87I	CYCGRG	2 cut(s)	269, 372
AoxI	GGCC	2 cut(s)	190, 339
ApeKI	GCWGC	6 cut(s)	84, 455, 509, 515, 690, 800
ApoI	RAATTY	1 cut(s)	328
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AseI	ATTAAT	1 cut(s)	534
Asp700I	GAANNNNTTC	1 cut(s)	50
AspS9I	GGNCC	4 cut(s)	65, 99, 190, 318
AsuC2I	CCSGG	3 cut(s)	270, 271, 316
AsuHPI	GGTGA	1 cut(s)	700
AvaI	CYCGRG	2 cut(s)	269, 372
AvaII	GGWCC	3 cut(s)	65, 99, 318
AxyI	CCTNAGG	1 cut(s)	753
BalI	TGGCCA	1 cut(s)	341
BbvI	GCAGC	6 cut(s)	71, 467, 496, 527, 677, 812
BccI	CCATC	4 cut(s)	76, 172, 356, 605
BclI	TGATCA	1 cut(s)	564
BcnI	CCSGG	3 cut(s)	270, 271, 316
BcoDI	GTCTC	1 cut(s)	575
BisI	GCNGC	8 cut(s)	85, 130, 456, 510, 513, 516, 691, 801
BlsI	GCNGC	8 cut(s)	86, 131, 457, 511, 514, 517, 692, 802
Bme1390I	CCNGG	3 cut(s)	270, 271, 316
Bme18I	GGWCC	3 cut(s)	65, 99, 318
BmeT110I	CYCGRG	2 cut(s)	269, 372
BmgT120I	GGNCC	4 cut(s)	65, 99, 190, 318
BmiI	GGNNCC	2 cut(s)	191, 486
BmrFI	CCNGG	3 cut(s)	270, 271, 316
BmsI	GCATC	5 cut(s)	96, 141, 260, 597, 787
BpuMI	CCSGG	3 cut(s)	270, 271, 316
BsaJI	CCNNGG	2 cut(s)	268, 269
BsaWI	WCCGGW	1 cut(s)	650
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse1I	ACTGG	1 cut(s)	342
Bse21I	CCTNAGG	1 cut(s)	753
BseDI	CCNNGG	2 cut(s)	268, 269
BseGI	GGATG	2 cut(s)	68, 547
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseMII	CTCAG	3 cut(s)	56, 656, 744
BseNI	ACTGG	1 cut(s)	342
BseXI	GCAGC	6 cut(s)	71, 467, 496, 527, 677, 812
BshFI	GGCC	2 cut(s)	192, 341
BsiHKCI	CYCGRG	2 cut(s)	269, 372
BsiSI	CCGG	4 cut(s)	97, 270, 316, 651
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmAI	GTCTC	1 cut(s)	575
BsmFI	GGGAC	1 cut(s)	632
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	192, 341
BsoBI	CYCGRG	2 cut(s)	269, 372
Bsp143I	GATC	5 cut(s)	21, 386, 430, 564, 640
BspACI	CCGC	6 cut(s)	82, 130, 299, 321, 512, 818
BspANI	GGCC	2 cut(s)	192, 341
BspCNI	CTCAG	3 cut(s)	55, 657, 745
BspLI	GGNNCC	2 cut(s)	191, 486
BspPI	GGATC	3 cut(s)	394, 438, 635
BsrI	ACTGG	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	268, 269
BssMI	GATC	5 cut(s)	21, 386, 430, 564, 640
Bst4CI	ACNGT	2 cut(s)	234, 403
Bst6I	CTCTTC	3 cut(s)	148, 203, 481
BstC8I	GCNNGC	2 cut(s)	671, 816
BstDEI	CTNAG	4 cut(s)	42, 408, 665, 753
BstF5I	GGATG	2 cut(s)	68, 547
BstKTI	GATC	5 cut(s)	24, 389, 433, 567, 643
BstMAI	GTCTC	1 cut(s)	575
BstMBI	GATC	5 cut(s)	21, 386, 430, 564, 640
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 320, 515, 696
BstNSI	RCATGY	3 cut(s)	220, 673, 818
BstSCI	CCNGG	3 cut(s)	268, 269, 314
BstV1I	GCAGC	6 cut(s)	71, 467, 496, 527, 677, 812
BstX2I	RGATCY	1 cut(s)	430
BstXI	CCANNNNNNTGG	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	430
Bsu36I	CCTNAGG	1 cut(s)	753
BsuRI	GGCC	2 cut(s)	192, 341
BtsCI	GGATG	2 cut(s)	68, 547
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	2 cut(s)	301, 335
Cac8I	GCNNGC	2 cut(s)	671, 816
Cfr13I	GGNCC	4 cut(s)	65, 99, 190, 318
Cfr9I	CCCGGG	1 cut(s)	269
CpoI	CGGWCCG	1 cut(s)	318
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	749
CspI	CGGWCCG	1 cut(s)	318
CviAII	CATG	9 cut(s)	217, 325, 426, 463, 562, 670, 739, 779, 815
CviQI	GTAC	1 cut(s)	749
DdeI	CTNAG	4 cut(s)	42, 408, 665, 753
DpnI	GATC	5 cut(s)	23, 388, 432, 566, 642
DpnII	GATC	5 cut(s)	21, 386, 430, 564, 640
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	3 cut(s)	148, 203, 481
EarI	CTCTTC	3 cut(s)	148, 203, 481
EciI	GGCGGA	1 cut(s)	310
Eco47I	GGWCC	3 cut(s)	65, 99, 318
Eco81I	CCTNAGG	1 cut(s)	753
Eco88I	CYCGRG	2 cut(s)	269, 372
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	328
EcoT22I	ATGCAT	1 cut(s)	744
FaeI	CATG	9 cut(s)	220, 328, 429, 466, 565, 673, 742, 782, 818
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	9 cut(s)	216, 324, 425, 462, 561, 669, 738, 778, 814
FbaI	TGATCA	1 cut(s)	564
Fnu4HI	GCNGC	8 cut(s)	85, 130, 456, 510, 513, 516, 691, 801
FokI	GGATG	2 cut(s)	55, 554
Fsp4HI	GCNGC	8 cut(s)	85, 130, 456, 510, 513, 516, 691, 801
GluI	GCNGC	8 cut(s)	85, 130, 456, 510, 513, 516, 691, 801
HaeIII	GGCC	2 cut(s)	192, 341
HapII	CCGG	4 cut(s)	97, 270, 316, 651
HgaI	GACGC	1 cut(s)	36
Hin1II	CATG	9 cut(s)	220, 328, 429, 466, 565, 673, 742, 782, 818
HinfI	GANTC	4 cut(s)	51, 500, 545, 583
HpaII	CCGG	4 cut(s)	97, 270, 316, 651
HphI	GGTGA	1 cut(s)	700
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	7 cut(s)	26, 45, 309, 391, 415, 550, 593
Hpy188III	TCNNGA	4 cut(s)	63, 497, 605, 644
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	3 cut(s)	69, 88, 203
HpyCH4III	ACNGT	2 cut(s)	234, 403
HpyCH4V	TGCA	6 cut(s)	87, 251, 455, 673, 742, 800
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 320, 515, 696
HpyF3I	CTNAG	4 cut(s)	42, 408, 665, 753
Hsp92II	CATG	9 cut(s)	220, 328, 429, 466, 565, 673, 742, 782, 818
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	5 cut(s)	21, 386, 430, 564, 640
LmnI	GCTCC	3 cut(s)	484, 677, 769
Lsp1109I	GCAGC	6 cut(s)	71, 467, 496, 527, 677, 812
LweI	GCATC	5 cut(s)	96, 141, 260, 597, 787
MaeIII	GTNAC	4 cut(s)	367, 397, 403, 706
MalI	GATC	5 cut(s)	23, 388, 432, 566, 642
MboI	GATC	5 cut(s)	21, 386, 430, 564, 640
MboII	GAAGA	9 cut(s)	135, 138, 141, 220, 428, 468, 797, 800, 806
MflI	RGATCY	1 cut(s)	430
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	3 cut(s)	328, 357, 572
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	2 cut(s)	494, 577
MmeI	TCCRAC	2 cut(s)	79, 558
MnlI	CCTC	4 cut(s)	119, 151, 532, 748
Mox20I	TGGCCA	1 cut(s)	341
Mph1103I	ATGCAT	1 cut(s)	744
MroXI	GAANNNNTTC	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	3 cut(s)	534, 660, 806
MslI	CAYNNNNRTG	1 cut(s)	374
Msp20I	TGGCCA	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	4 cut(s)	97, 270, 316, 651
MspR9I	CCNGG	3 cut(s)	270, 271, 316
Mva1269I	GAATGC	1 cut(s)	316
MwoI	GCNNNNNNNGC	4 cut(s)	93, 320, 515, 696
NciI	CCSGG	3 cut(s)	270, 271, 316
NdeII	GATC	5 cut(s)	21, 386, 430, 564, 640
NlaIII	CATG	9 cut(s)	220, 328, 429, 466, 565, 673, 742, 782, 818
NlaIV	GGNNCC	2 cut(s)	191, 486
NmuCI	GTSAC	2 cut(s)	367, 706
NsiI	ATGCAT	1 cut(s)	744
NspI	RCATGY	3 cut(s)	220, 673, 818
OliI	CACNNNNGTG	1 cut(s)	374
PaeI	GCATGC	2 cut(s)	673, 818
PaeR7I	CTCGAG	1 cut(s)	372
PctI	GAATGC	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	51, 545
PflFI	GACNNNGTC	1 cut(s)	30
PkrI	GCNGC	8 cut(s)	86, 131, 457, 511, 514, 517, 692, 802
PleI	GAGTC	2 cut(s)	494, 577
PpsI	GAGTC	2 cut(s)	494, 577
PshBI	ATTAAT	1 cut(s)	534
PspN4I	GGNNCC	2 cut(s)	191, 486
PspPI	GGNCC	4 cut(s)	65, 99, 190, 318
PspXI	VCTCGAGB	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	30
RsaI	GTAC	1 cut(s)	750
RsaNI	GTAC	1 cut(s)	749
RseI	CAYNNNNRTG	1 cut(s)	374
Rsr2I	CGGWCCG	1 cut(s)	318
RsrII	CGGWCCG	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	534, 660, 806
SatI	GCNGC	8 cut(s)	85, 130, 456, 510, 513, 516, 691, 801
Sau3AI	GATC	5 cut(s)	21, 386, 430, 564, 640
Sau96I	GGNCC	4 cut(s)	65, 99, 190, 318
SchI	GAGTC	2 cut(s)	494, 577
ScrFI	CCNGG	3 cut(s)	270, 271, 316
SetI	ASST	8 cut(s)	61, 80, 104, 511, 532, 701, 754, 759
SfaNI	GCATC	5 cut(s)	96, 141, 260, 597, 787
Sfr274I	CTCGAG	1 cut(s)	372
SinI	GGWCC	3 cut(s)	65, 99, 318
SlaI	CTCGAG	1 cut(s)	372
SmaI	CCCGGG	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
SphI	GCATGC	2 cut(s)	673, 818
Sse9I	AATT	3 cut(s)	328, 357, 572
SsiI	CCGC	6 cut(s)	82, 130, 299, 321, 512, 818
StyD4I	CCNGG	3 cut(s)	268, 269, 314
TaaI	ACNGT	2 cut(s)	234, 403
TaqI	TCGA	2 cut(s)	373, 498
TasI	AATT	3 cut(s)	328, 357, 572
TauI	GCSGC	2 cut(s)	132, 515
TfiI	GAWTC	2 cut(s)	51, 545
Tru1I	TTAA	3 cut(s)	534, 660, 806
Tru9I	TTAA	3 cut(s)	534, 660, 806
TscAI	CASTG	2 cut(s)	301, 342
TseFI	GTSAC	2 cut(s)	367, 706
TseI	GCWGC	6 cut(s)	84, 455, 509, 515, 690, 800
Tsp45I	GTSAC	2 cut(s)	367, 706
TspDTI	ATGAA	6 cut(s)	27, 147, 341, 414, 798, 807
TspMI	CCCGGG	1 cut(s)	269
TspRI	CASTG	2 cut(s)	301, 342
Tth111I	GACNNNGTC	1 cut(s)	30
VpaK11BI	GGWCC	3 cut(s)	65, 99, 318
VspI	ATTAAT	1 cut(s)	534
XapI	RAATTY	1 cut(s)	328
XceI	RCATGY	3 cut(s)	220, 673, 818
XhoI	CTCGAG	1 cut(s)	372
XmaI	CCCGGG	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.