Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011072

Physical Location & Seq

Genomic Coordinates Forward (+)

7348157 .. 7350341

Gene Structure 2185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGAAAGGGATTGCGAGGCTTGTAACTTCTCTATCGCGAATCGGAGGTCGCAAGGTCGTTTCTGGAACAAGTACTGTGACTTCTTCTTCGTCTTCCTCTCTTCTGCTATCTCGTCGCTCGCTTTTCATCTCTGCCACCAATTTACTTAATTCCCGGACCAAGGATTCTGCTCTTCCCTCGTTGAATTCTTCTTTACTTGCTCAGAAATGGAATTTCCTCGGAGGGCAGAGAAGAACAATGTTTATCCAAACCCAATCAACTCCAAATCCTTCTTCTCTCATGTTTTATCCTGGCAAACCAGTCATGGAAGTTGGAAGTGCTGATTTTCCTAATGTTCGTTCTGCTCTGGGTTCGCCATTAGCCAAATCTATTTACTCCATTGATGGTGTAGTTCGAGTTTTCTTTGGGTCAGATTTTGTCACTGTAACTAAGTCAGATGATGTATCATGGGATATTCTCAAGCCTGAGATATTTGCAGCAGTCATGGATTTCTATTCTTCTGGCCAGCCTTTGTTTCTCGACTCACAAGCTGCTGCTGCCAAGGATACTGCCATCAGCGAGGATGACTCTGAAACAGTAGCAATGATCAAGGAACTCTTAGAAACACGCATCAGACCAGCAGTTCAAGATGATGGTGGGGACATTGAGTATTGTGGGTTTGATCCGGAAAGCGGTATAGTGAAGCTGAGGATGCAAGGAGCTTGTAGTGGTTGTCCGAGCTCATCTGTTACTTTGAAATCGGGAATCGAAAACATGCTGATGCATTATGTATCCGAGGTGAAAGGTGTAGAACAAGAGTTTGATGGGGAAGATGAAGAGGGAACGTTGTCTGGAGAGATGAGAGTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005198 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nfu_N NifU

Protein Analysis

283

Amino Acids

30.5

Weight (kDa)

4.9

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nfu_N	PF08712	82 - 168	8.4e-29	Scaffold protein Nfu/NifU N terminal
NifU	PF01106	196 - 221	2.6e-06	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51390 AT3G20970 AT3G20970
fragaria_vesca	FvH4_1g23510 FvH4_1g23510
malus_domestica	MD04G1028700.v1.1
prunus_persica	Prupe.2G079800_v2.0.a1
pyrus_communis	pycom04g02500
rosa_chinensis	RchiOBHm_Chr2g0118911
rosa_laevigata	RLG00000018435
rosa_multiflora	Rmu_sc0001653.1_g000031 Rmu_sc0003492.1_g000006
rosa_roxburghii	Rroxscaffold_2G00124590 Rroxscaffold_2G00144600
rosa_rugosa	Rorug02G0219500
rosa_samantha	Rh2AG276800 Rh2BG288500 Rh2DG283800 Rh2DG302900
rosa_wichuraiana	Rw2G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	37
AccIII	TCCGGA	1 cut(s)	664
AciI	CCGC	1 cut(s)	672
AclI	AACGTT	1 cut(s)	824
AclWI	GGATC	1 cut(s)	656
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	2 cut(s)	184, 211
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	2 cut(s)	160, 671
AgsI	TTSAA	3 cut(s)	184, 626, 736
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	256, 288
AluBI	AGCT	4 cut(s)	530, 685, 701, 720
AluI	AGCT	4 cut(s)	530, 685, 701, 720
Alw21I	GWGCWC	1 cut(s)	722
AlwI	GGATC	1 cut(s)	656
Aor13HI	TCCGGA	1 cut(s)	664
AoxI	GGCC	1 cut(s)	502
ApeKI	GCWGC	4 cut(s)	476, 530, 533, 536
ApoI	RAATTY	2 cut(s)	184, 211
ArsI	GACNNNNNNTTYG	4 cut(s)	31, 63, 70, 102
AspS9I	GGNCC	1 cut(s)	156
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	790
AvaII	GGWCC	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	504
BanII	GRGCYC	1 cut(s)	722
BarI	GAAGNNNNNNTAC	2 cut(s)	64, 96
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	722
BbvCI	CCTCAGC	1 cut(s)	686
BbvI	GCAGC	4 cut(s)	488, 517, 520, 523
BccI	CCATC	4 cut(s)	377, 560, 626, 797
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	2 cut(s)	538, 781
BclI	TGATCA	1 cut(s)	585
BcnI	CCSGG	1 cut(s)	154
BfuI	GTATCC	2 cut(s)	538, 781
BisI	GCNGC	4 cut(s)	477, 531, 534, 537
BlsI	GCNGC	4 cut(s)	478, 532, 535, 538
BmcAI	AGTACT	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	154, 291
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	156
BmrFI	CCNGG	2 cut(s)	154, 291
BmsI	GCATC	3 cut(s)	618, 681, 750
BpiI	GAAGAC	1 cut(s)	84
BplI	GAGNNNNNCTC	2 cut(s)	551, 583
BpmI	CTGGAG	1 cut(s)	852
Bpu10I	CCTNAGC	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	154
BsaJI	CCNNGG	4 cut(s)	159, 217, 540, 774
BsaWI	WCCGGW	1 cut(s)	664
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 671
Bse1I	ACTGG	1 cut(s)	299
Bse3DI	GCAATG	1 cut(s)	588
BseAI	TCCGGA	1 cut(s)	664
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	4 cut(s)	159, 217, 540, 774
BseGI	GGATG	2 cut(s)	568, 696
BseLI	CCNNNNNNNGG	2 cut(s)	160, 671
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	3 cut(s)	215, 456, 677
BseNI	ACTGG	1 cut(s)	299
BseXI	GCAGC	4 cut(s)	488, 517, 520, 523
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	722
BsiSI	CCGG	2 cut(s)	154, 665
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	2 cut(s)	160, 671
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	1 cut(s)	504
Bsp1286I	GDGCHC	1 cut(s)	722
Bsp13I	TCCGGA	1 cut(s)	664
Bsp143I	GATC	2 cut(s)	585, 661
Bsp68I	TCGCGA	1 cut(s)	37
BspACI	CCGC	1 cut(s)	672
BspANI	GGCC	1 cut(s)	504
BspCNI	CTCAG	3 cut(s)	214, 457, 678
BspEI	TCCGGA	1 cut(s)	664
BspFNI	CGCG	1 cut(s)	37
BspPI	GGATC	1 cut(s)	656
BspQI	GCTCTTC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	588
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	4 cut(s)	159, 217, 540, 774
BssMI	GATC	2 cut(s)	585, 661
BssT1I	CCWWGG	2 cut(s)	159, 540
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	3 cut(s)	76, 424, 577
Bst6I	CTCTTC	3 cut(s)	105, 177, 810
BstC8I	GCNNGC	2 cut(s)	119, 506
BstDEI	CTNAG	5 cut(s)	201, 429, 465, 598, 686
BstF5I	GGATG	2 cut(s)	568, 696
BstFNI	CGCG	1 cut(s)	37
BstKTI	GATC	2 cut(s)	588, 664
BstMBI	GATC	2 cut(s)	585, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 691
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	2 cut(s)	152, 289
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	4 cut(s)	488, 517, 520, 523
BstV2I	GAAGAC	1 cut(s)	84
BsuI	GTATCC	2 cut(s)	538, 781
BsuRI	GGCC	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	568, 696
BtsIMutI	CAGTG	1 cut(s)	420
BtuMI	TCGCGA	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	119, 506
Cfr13I	GGNCC	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	5 cut(s)	280, 304, 447, 484, 754
CviJI	RGCY	9 cut(s)	19, 362, 463, 504, 508, 530, 685, 701, 720
CviKI_1	RGCY	9 cut(s)	19, 362, 463, 504, 508, 530, 685, 701, 720
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	5 cut(s)	201, 429, 465, 598, 686
DpnI	GATC	2 cut(s)	587, 663
DpnII	GATC	2 cut(s)	585, 661
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	3 cut(s)	105, 177, 810
EarI	CTCTTC	3 cut(s)	105, 177, 810
Ecl136II	GAGCTC	1 cut(s)	720
Eco130I	CCWWGG	2 cut(s)	159, 540
Eco24I	GRGCYC	1 cut(s)	722
Eco47I	GGWCC	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	720
EcoICRI	GAGCTC	1 cut(s)	720
EcoRI	GAATTC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	159, 540
EcoT22I	ATGCAT	1 cut(s)	765
EcoT38I	GRGCYC	1 cut(s)	722
ErhI	CCWWGG	2 cut(s)	159, 540
FaeI	CATG	5 cut(s)	283, 307, 450, 487, 757
FaiI	YATR	7 cut(s)	281, 305, 448, 485, 677, 755, 768
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	5 cut(s)	279, 303, 446, 483, 753
FbaI	TGATCA	1 cut(s)	585
Fnu4HI	GCNGC	4 cut(s)	477, 531, 534, 537
FokI	GGATG	2 cut(s)	575, 703
FriOI	GRGCYC	1 cut(s)	722
Fsp4HI	GCNGC	4 cut(s)	477, 531, 534, 537
GluI	GCNGC	4 cut(s)	477, 531, 534, 537
GsuI	CTGGAG	1 cut(s)	852
HaeIII	GGCC	1 cut(s)	504
HapII	CCGG	2 cut(s)	154, 665
Hin1II	CATG	5 cut(s)	283, 307, 450, 487, 757
HinfI	GANTC	5 cut(s)	39, 164, 521, 566, 744
HpaII	CCGG	2 cut(s)	154, 665
HphI	GGTGA	1 cut(s)	790
Hpy188I	TCNGA	9 cut(s)	44, 204, 221, 412, 436, 571, 614, 717, 775
Hpy188III	TCNNGA	7 cut(s)	36, 63, 518, 626, 665, 741, 831
Hpy99I	CGWCG	1 cut(s)	117
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	3 cut(s)	76, 424, 577
HpyCH4IV	ACGT	1 cut(s)	824
HpyCH4V	TGCA	3 cut(s)	476, 694, 763
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 691
HpyF3I	CTNAG	5 cut(s)	201, 429, 465, 598, 686
HpySE526I	ACGT	1 cut(s)	824
Hsp92II	CATG	5 cut(s)	283, 307, 450, 487, 757
Kpn2I	TCCGGA	1 cut(s)	664
Ksp22I	TGATCA	1 cut(s)	585
Kzo9I	GATC	2 cut(s)	585, 661
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	698
Lsp1109I	GCAGC	4 cut(s)	488, 517, 520, 523
LweI	GCATC	3 cut(s)	618, 681, 750
MaeII	ACGT	1 cut(s)	824
MaeIII	GTNAC	5 cut(s)	22, 76, 418, 424, 727
MalI	GATC	2 cut(s)	587, 663
MboI	GATC	2 cut(s)	585, 661
MhlI	GDGCHC	1 cut(s)	722
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	4 cut(s)	139, 148, 184, 211
MluNI	TGGCCA	1 cut(s)	504
MlyI	GAGTC	2 cut(s)	515, 560
MmeI	TCCRAC	1 cut(s)	292
Mox20I	TGGCCA	1 cut(s)	504
Mph1103I	ATGCAT	1 cut(s)	765
MroI	TCCGGA	1 cut(s)	664
MscI	TGGCCA	1 cut(s)	504
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	758
Msp20I	TGGCCA	1 cut(s)	504
MspI	CCGG	2 cut(s)	154, 665
MspR9I	CCNGG	2 cut(s)	154, 291
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	2 cut(s)	536, 691
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	2 cut(s)	585, 661
NlaIII	CATG	5 cut(s)	283, 307, 450, 487, 757
NmuCI	GTSAC	2 cut(s)	76, 418
NruI	TCGCGA	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	765
NspI	RCATGY	1 cut(s)	757
PciSI	GCTCTTC	1 cut(s)	177
PfeI	GAWTC	3 cut(s)	39, 164, 744
PfoI	TCCNGGA	1 cut(s)	152
PkrI	GCNGC	4 cut(s)	478, 532, 535, 538
PleI	GAGTC	2 cut(s)	515, 560
PpsI	GAGTC	2 cut(s)	515, 560
Psp124BI	GAGCTC	1 cut(s)	722
Psp1406I	AACGTT	1 cut(s)	824
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	156
RruI	TCGCGA	1 cut(s)	37
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	758
SacI	GAGCTC	1 cut(s)	722
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	4 cut(s)	477, 531, 534, 537
Sau3AI	GATC	2 cut(s)	585, 661
Sau96I	GGNCC	1 cut(s)	156
ScaI	AGTACT	1 cut(s)	73
SchI	GAGTC	2 cut(s)	515, 560
ScrFI	CCNGG	2 cut(s)	154, 291
SduI	GDGCHC	1 cut(s)	722
SetI	ASST	9 cut(s)	49, 57, 532, 687, 703, 722, 780, 787, 827
SfaNI	GCATC	3 cut(s)	618, 681, 750
SinI	GGWCC	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	758
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	4 cut(s)	139, 148, 184, 211
SsiI	CCGC	1 cut(s)	672
SstI	GAGCTC	1 cut(s)	722
StyD4I	CCNGG	2 cut(s)	152, 289
StyI	CCWWGG	2 cut(s)	159, 540
TaaI	ACNGT	3 cut(s)	76, 424, 577
TaiI	ACGT	1 cut(s)	827
TaqI	TCGA	3 cut(s)	394, 519, 747
TasI	AATT	4 cut(s)	139, 148, 184, 211
TatI	WGTACW	1 cut(s)	71
TfiI	GAWTC	3 cut(s)	39, 164, 744
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	2 cut(s)	76, 418
TseI	GCWGC	4 cut(s)	476, 530, 533, 536
Tsp45I	GTSAC	2 cut(s)	76, 418
TspDTI	ATGAA	3 cut(s)	17, 115, 828
TspRI	CASTG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	2 cut(s)	184, 211
XceI	RCATGY	1 cut(s)	757
ZrmI	AGTACT	1 cut(s)	73
Zsp2I	ATGCAT	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.