Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001653.1

Orthogroup ID

OG0011072

Physical Location & Seq

Genomic Coordinates Forward (+)

129033 .. 133068

Gene Structure 4036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001653.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atgaggggtttggcaagattgatcggacgcagtctttcatctcacaaaagattccaaccctctggaccatccactacctttcgctgcatctctcgccggacctatttcctctctgcttatttgggtcgccgtatctccccctcttctcctgcttcatctcctttcgcttctacaaaatggggccttctttcagggcagaggagaagcatgtttatacaaacacagtccacacccaatcctgcatctcttatgttttaccccgggaagcctgttatggaagttggcagtgcagactttccgaatgcccggtccgccatgaattccccactggccaaagccctttatggaattgatggtgtcactcgagtgttttttggatcagattttgttactgtaactaagtcagaagatacttcatgggatcttttgaagccagaaatctttgcagcaatcatggacttttactcttctggggagccactctttctcgactcaaaagctgcagcagcaaaggacacagctattaatgaggatgattcagaaatagttgccatgatcaaagaattgttggagactcgcatcagaccagcagttcaagatgatggtggggacattgagtataagggatttgatccagaaaccggaatagttaaactgagcatgcaaggagcgtgtagtggctgcccaagctcatcagtcaccctgaaatctggcattgaaaatatgctcatgcattatgtacctgaggtcaaaggtgtggagcaagaacatgatgaagaagatgaagatgcagcattaacggggcatgcagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005198 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nfu_N NifU

Protein Analysis

271

Amino Acids

29.53

Weight (kDa)

5.26

Isoelectric Point (pI)

60.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51390 AT3G20970 AT3G20970
fragaria_vesca	FvH4_1g23510 FvH4_1g23510
malus_domestica	MD04G1028700.v1.1
prunus_persica	Prupe.2G079800_v2.0.a1
pyrus_communis	pycom04g02500
rosa_chinensis	RchiOBHm_Chr2g0118911
rosa_laevigata	RLG00000018435
rosa_multiflora	Rmu_sc0001653.1_g000031 Rmu_sc0003492.1_g000006
rosa_roxburghii	Rroxscaffold_2G00124590 Rroxscaffold_2G00144600
rosa_rugosa	Rorug02G0219500
rosa_samantha	Rh2AG276800 Rh2BG288500 Rh2DG283800 Rh2DG302900
rosa_wichuraiana	Rw2G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	3 cut(s)	385, 429, 626
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	319
AfaI	GTAC	1 cut(s)	741
AfiI	CCNNNNNNNGG	1 cut(s)	641
AgsI	TTSAA	3 cut(s)	430, 596, 719
AleI	CACNNNNGTG	1 cut(s)	365
AluBI	AGCT	3 cut(s)	500, 521, 690
AluI	AGCT	3 cut(s)	500, 521, 690
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	3 cut(s)	385, 429, 626
Ama87I	CYCGRG	2 cut(s)	260, 363
AoxI	GGCC	2 cut(s)	181, 330
ApeKI	GCWGC	7 cut(s)	84, 446, 500, 503, 506, 681, 791
ApoI	RAATTY	1 cut(s)	319
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AseI	ATTAAT	1 cut(s)	525
AspS9I	GGNCC	4 cut(s)	65, 99, 181, 309
AsuC2I	CCSGG	3 cut(s)	261, 262, 307
AsuHPI	GGTGA	1 cut(s)	691
AvaI	CYCGRG	2 cut(s)	260, 363
AvaII	GGWCC	3 cut(s)	65, 99, 309
AxyI	CCTNAGG	1 cut(s)	744
BalI	TGGCCA	1 cut(s)	332
BbvI	GCAGC	7 cut(s)	71, 458, 487, 515, 518, 668, 803
BccI	CCATC	3 cut(s)	76, 347, 596
BceAI	ACGGC	1 cut(s)	114
BclI	TGATCA	1 cut(s)	555
BcnI	CCSGG	3 cut(s)	261, 262, 307
BcoDI	GTCTC	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	501
BisI	GCNGC	7 cut(s)	85, 447, 501, 504, 507, 682, 792
BlsI	GCNGC	7 cut(s)	86, 448, 502, 505, 508, 683, 793
Bme1390I	CCNGG	3 cut(s)	261, 262, 307
Bme18I	GGWCC	3 cut(s)	65, 99, 309
BmeT110I	CYCGRG	2 cut(s)	260, 363
BmgT120I	GGNCC	4 cut(s)	65, 99, 181, 309
BmiI	GGNNCC	2 cut(s)	182, 477
BmrFI	CCNGG	3 cut(s)	261, 262, 307
BmsI	GCATC	4 cut(s)	96, 251, 588, 778
BpuMI	CCSGG	3 cut(s)	261, 262, 307
BsaJI	CCNNGG	2 cut(s)	259, 260
BsaWI	WCCGGW	1 cut(s)	641
Bsc4I	CCNNNNNNNGG	1 cut(s)	641
Bse1I	ACTGG	1 cut(s)	333
Bse21I	CCTNAGG	1 cut(s)	744
BseDI	CCNNGG	2 cut(s)	259, 260
BseGI	GGATG	2 cut(s)	68, 538
BseLI	CCNNNNNNNGG	1 cut(s)	641
BseMII	CTCAG	2 cut(s)	647, 735
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	214
BseXI	GCAGC	7 cut(s)	71, 458, 487, 515, 518, 668, 803
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	183, 332
BsiHKCI	CYCGRG	2 cut(s)	260, 363
BsiSI	CCGG	4 cut(s)	97, 261, 307, 642
BslFI	GGGAC	1 cut(s)	623
BslI	CCNNNNNNNGG	1 cut(s)	641
BsmAI	GTCTC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	623
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	183, 332
BsoBI	CYCGRG	2 cut(s)	260, 363
Bsp143I	GATC	5 cut(s)	21, 377, 421, 555, 631
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	2 cut(s)	183, 332
BspCNI	CTCAG	2 cut(s)	648, 736
BspLI	GGNNCC	2 cut(s)	182, 477
BspMAI	CTGCAG	1 cut(s)	505
BspPI	GGATC	3 cut(s)	385, 429, 626
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	259, 260
BssMI	GATC	5 cut(s)	21, 377, 421, 555, 631
Bst4CI	ACNGT	2 cut(s)	225, 394
Bst6I	CTCTTC	2 cut(s)	148, 472
BstC8I	GCNNGC	2 cut(s)	662, 807
BstDEI	CTNAG	3 cut(s)	399, 656, 744
BstF5I	GGATG	2 cut(s)	68, 538
BstKTI	GATC	5 cut(s)	24, 380, 424, 558, 634
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	5 cut(s)	21, 377, 421, 555, 631
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 311, 506, 687
BstNSI	RCATGY	3 cut(s)	211, 664, 809
BstSCI	CCNGG	3 cut(s)	259, 260, 305
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	7 cut(s)	71, 458, 487, 515, 518, 668, 803
BstX2I	RGATCY	1 cut(s)	421
BstXI	CCANNNNNNTGG	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	421
Bsu36I	CCTNAGG	1 cut(s)	744
BsuRI	GGCC	2 cut(s)	183, 332
BtsCI	GGATG	2 cut(s)	68, 538
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	292, 326
Cac8I	GCNNGC	2 cut(s)	662, 807
Cfr13I	GGNCC	4 cut(s)	65, 99, 181, 309
Cfr9I	CCCGGG	1 cut(s)	260
CpoI	CGGWCCG	1 cut(s)	309
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	740
CspI	CGGWCCG	1 cut(s)	309
CviAII	CATG	9 cut(s)	208, 316, 417, 454, 553, 661, 730, 770, 806
CviQI	GTAC	1 cut(s)	740
DdeI	CTNAG	3 cut(s)	399, 656, 744
DpnI	GATC	5 cut(s)	23, 379, 423, 557, 633
DpnII	GATC	5 cut(s)	21, 377, 421, 555, 631
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	2 cut(s)	148, 472
EarI	CTCTTC	2 cut(s)	148, 472
EciI	GGCGGA	1 cut(s)	301
Eco47I	GGWCC	3 cut(s)	65, 99, 309
Eco81I	CCTNAGG	1 cut(s)	744
Eco88I	CYCGRG	2 cut(s)	260, 363
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	735
FaeI	CATG	9 cut(s)	211, 319, 420, 457, 556, 664, 733, 773, 809
FaqI	GGGAC	1 cut(s)	623
FatI	CATG	9 cut(s)	207, 315, 416, 453, 552, 660, 729, 769, 805
FbaI	TGATCA	1 cut(s)	555
Fnu4HI	GCNGC	7 cut(s)	85, 447, 501, 504, 507, 682, 792
FokI	GGATG	2 cut(s)	55, 545
Fsp4HI	GCNGC	7 cut(s)	85, 447, 501, 504, 507, 682, 792
GluI	GCNGC	7 cut(s)	85, 447, 501, 504, 507, 682, 792
HaeIII	GGCC	2 cut(s)	183, 332
HapII	CCGG	4 cut(s)	97, 261, 307, 642
HgaI	GACGC	1 cut(s)	36
Hin1II	CATG	9 cut(s)	211, 319, 420, 457, 556, 664, 733, 773, 809
HinfI	GANTC	4 cut(s)	51, 491, 536, 574
HpaII	CCGG	4 cut(s)	97, 261, 307, 642
HphI	GGTGA	1 cut(s)	691
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	6 cut(s)	26, 300, 382, 406, 541, 584
Hpy188III	TCNNGA	4 cut(s)	63, 488, 596, 635
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	2 cut(s)	225, 394
HpyCH4V	TGCA	9 cut(s)	87, 242, 290, 446, 503, 664, 733, 791, 809
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 311, 506, 687
HpyF3I	CTNAG	3 cut(s)	399, 656, 744
Hsp92II	CATG	9 cut(s)	211, 319, 420, 457, 556, 664, 733, 773, 809
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	5 cut(s)	21, 377, 421, 555, 631
LmnI	GCTCC	3 cut(s)	475, 668, 760
Lsp1109I	GCAGC	7 cut(s)	71, 458, 487, 515, 518, 668, 803
LweI	GCATC	4 cut(s)	96, 251, 588, 778
MaeIII	GTNAC	4 cut(s)	358, 388, 394, 697
MalI	GATC	5 cut(s)	23, 379, 423, 557, 633
MboI	GATC	5 cut(s)	21, 377, 421, 555, 631
MboII	GAAGA	6 cut(s)	135, 419, 459, 788, 791, 797
MflI	RGATCY	1 cut(s)	421
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	3 cut(s)	319, 348, 563
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	2 cut(s)	485, 568
MmeI	TCCRAC	2 cut(s)	79, 549
MnlI	CCTC	6 cut(s)	70, 119, 151, 192, 523, 739
Mox20I	TGGCCA	1 cut(s)	332
Mph1103I	ATGCAT	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	3 cut(s)	525, 651, 797
MslI	CAYNNNNRTG	1 cut(s)	365
Msp20I	TGGCCA	1 cut(s)	332
MspI	CCGG	4 cut(s)	97, 261, 307, 642
MspR9I	CCNGG	3 cut(s)	261, 262, 307
Mva1269I	GAATGC	1 cut(s)	307
MwoI	GCNNNNNNNGC	4 cut(s)	93, 311, 506, 687
NciI	CCSGG	3 cut(s)	261, 262, 307
NdeII	GATC	5 cut(s)	21, 377, 421, 555, 631
NlaIII	CATG	9 cut(s)	211, 319, 420, 457, 556, 664, 733, 773, 809
NlaIV	GGNNCC	2 cut(s)	182, 477
NmuCI	GTSAC	2 cut(s)	358, 697
NsiI	ATGCAT	1 cut(s)	735
NspI	RCATGY	3 cut(s)	211, 664, 809
OliI	CACNNNNGTG	1 cut(s)	365
PaeI	GCATGC	2 cut(s)	664, 809
PaeR7I	CTCGAG	1 cut(s)	363
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	51, 536
PflFI	GACNNNGTC	1 cut(s)	30
PkrI	GCNGC	7 cut(s)	86, 448, 502, 505, 508, 683, 793
PleI	GAGTC	2 cut(s)	485, 568
PpsI	GAGTC	2 cut(s)	485, 568
PshBI	ATTAAT	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	182, 477
PspPI	GGNCC	4 cut(s)	65, 99, 181, 309
PspXI	VCTCGAGB	1 cut(s)	363
PstI	CTGCAG	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	421
PsyI	GACNNNGTC	1 cut(s)	30
RsaI	GTAC	1 cut(s)	741
RsaNI	GTAC	1 cut(s)	740
RseI	CAYNNNNRTG	1 cut(s)	365
Rsr2I	CGGWCCG	1 cut(s)	309
RsrII	CGGWCCG	1 cut(s)	309
SaqAI	TTAA	3 cut(s)	525, 651, 797
SatI	GCNGC	7 cut(s)	85, 447, 501, 504, 507, 682, 792
Sau3AI	GATC	5 cut(s)	21, 377, 421, 555, 631
Sau96I	GGNCC	4 cut(s)	65, 99, 181, 309
SchI	GAGTC	2 cut(s)	485, 568
ScrFI	CCNGG	3 cut(s)	261, 262, 307
SetI	ASST	8 cut(s)	80, 104, 502, 523, 692, 745, 750, 757
SfaNI	GCATC	4 cut(s)	96, 251, 588, 778
SfcI	CTRYAG	1 cut(s)	501
Sfr274I	CTCGAG	1 cut(s)	363
SinI	GGWCC	3 cut(s)	65, 99, 309
SlaI	CTCGAG	1 cut(s)	363
SmaI	CCCGGG	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
SphI	GCATGC	2 cut(s)	664, 809
Sse9I	AATT	3 cut(s)	319, 348, 563
SsiI	CCGC	1 cut(s)	312
StyD4I	CCNGG	3 cut(s)	259, 260, 305
TaaI	ACNGT	2 cut(s)	225, 394
TaqI	TCGA	2 cut(s)	364, 489
TasI	AATT	3 cut(s)	319, 348, 563
TfiI	GAWTC	2 cut(s)	51, 536
Tru1I	TTAA	3 cut(s)	525, 651, 797
Tru9I	TTAA	3 cut(s)	525, 651, 797
TscAI	CASTG	2 cut(s)	292, 333
TseFI	GTSAC	2 cut(s)	358, 697
TseI	GCWGC	7 cut(s)	84, 446, 500, 503, 506, 681, 791
Tsp45I	GTSAC	2 cut(s)	358, 697
TspDTI	ATGAA	6 cut(s)	27, 144, 332, 405, 789, 798
TspMI	CCCGGG	1 cut(s)	260
TspRI	CASTG	2 cut(s)	292, 333
Tth111I	GACNNNGTC	1 cut(s)	30
VpaK11BI	GGWCC	3 cut(s)	65, 99, 309
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	1 cut(s)	319
XceI	RCATGY	3 cut(s)	211, 664, 809
XhoI	CTCGAG	1 cut(s)	363
XmaI	CCCGGG	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.