Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011072

Physical Location & Seq

Genomic Coordinates Reverse (-)

31980765 .. 31985456

Gene Structure 4692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG288500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAGGGGTTTGGCAAGATTGATCGGACGCAGTCTTTCATCTCACAAAAGATTCCAACCCTCTGGACCATCCACTACCTTCCGCTGCATCTCTCGCCGGACCTATTTCCTCTCTGCTTATTTGGGTCGCCGTATCTCCCCCTCTTCTCCTGCTTCATCTCCTTTCGCTTCTACAAAATGGGGCCTTCTTTCAGGGCAGAAGAGAAGCATGTTTATACAAACACAGTCCACACCCAATCCTGCATCTCTTATGTTTTATCCCGGGAAGCCTGTTATGGAAGTTGGCAGTGCAGACTTTCCGAATGCCCGGTCCGCCATGAATTCCCCACTGGCCAAAGCCCTTTATGGAATTGATGGTGTCACTCGAGTGTTTTTTGGATCAGATTTTGTTACTGTAACTAAGTCAGAAGACACTTCATGGGATCTTTTGAAGCCAGAAATCTTTGCAGCAATCATGGACTTTTACTCTTCTGGGGAGCCACTCTTTCTCGACTCAAAAGCTGCAGCAGCAAAGGACACAGCTATTAATGAGGATGATTCAGAAATAGTTGCCATCAAAGAATTGTTGGAGACTCGCATCAGACCAGCAGTTCAAGATGATGGTGGGGACATTGAGTATAAGGGATTTGATCCAGAAACCGGAATAGTTAAACTGAGCATGCAAGGAGCGTGTAGTGGCTGCCCAAGCTCATCAGTCACCCTGAAATCTGGCATTGAAAATATGCTCATGCATTATGTACCTGAGGTCAAAGGTGTGGAGCAAGAACATGATGAAGAAGATGAAGATGCAGCATTAACGGGGCATGCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005198 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nfu_N NifU

Protein Analysis

270

Amino Acids

29.37

Weight (kDa)

5.26

Isoelectric Point (pI)

59.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nfu_N	PF08712	72 - 158	5.1e-31	Scaffold protein Nfu/NifU N terminal
NifU	PF01106	185 - 253	1.3e-28	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51390 AT3G20970 AT3G20970
fragaria_vesca	FvH4_1g23510 FvH4_1g23510
malus_domestica	MD04G1028700.v1.1
prunus_persica	Prupe.2G079800_v2.0.a1
pyrus_communis	pycom04g02500
rosa_chinensis	RchiOBHm_Chr2g0118911
rosa_laevigata	RLG00000018435
rosa_multiflora	Rmu_sc0001653.1_g000031 Rmu_sc0003492.1_g000006
rosa_roxburghii	Rroxscaffold_2G00124590 Rroxscaffold_2G00144600
rosa_rugosa	Rorug02G0219500
rosa_samantha	Rh2AG276800 Rh2BG288500 Rh2DG283800 Rh2DG302900
rosa_wichuraiana	Rw2G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	82, 312
AclWI	GGATC	3 cut(s)	385, 429, 623
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	319
AfaI	GTAC	1 cut(s)	738
AfiI	CCNNNNNNNGG	1 cut(s)	638
AgsI	TTSAA	3 cut(s)	430, 593, 716
AleI	CACNNNNGTG	1 cut(s)	365
AluBI	AGCT	3 cut(s)	500, 521, 687
AluI	AGCT	3 cut(s)	500, 521, 687
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	3 cut(s)	385, 429, 623
Ama87I	CYCGRG	2 cut(s)	260, 363
AoxI	GGCC	2 cut(s)	181, 330
ApeKI	GCWGC	7 cut(s)	84, 446, 500, 503, 506, 678, 788
ApoI	RAATTY	1 cut(s)	319
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AseI	ATTAAT	1 cut(s)	525
AspS9I	GGNCC	4 cut(s)	65, 99, 181, 309
AsuC2I	CCSGG	3 cut(s)	261, 262, 307
AsuHPI	GGTGA	1 cut(s)	688
AvaI	CYCGRG	2 cut(s)	260, 363
AvaII	GGWCC	3 cut(s)	65, 99, 309
AxyI	CCTNAGG	1 cut(s)	741
BalI	TGGCCA	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	414
BbvI	GCAGC	7 cut(s)	71, 458, 487, 515, 518, 665, 800
BccI	CCATC	4 cut(s)	76, 347, 560, 593
BceAI	ACGGC	1 cut(s)	114
BcnI	CCSGG	3 cut(s)	261, 262, 307
BcoDI	GTCTC	1 cut(s)	563
BfmI	CTRYAG	1 cut(s)	501
BisI	GCNGC	7 cut(s)	85, 447, 501, 504, 507, 679, 789
BlsI	GCNGC	7 cut(s)	86, 448, 502, 505, 508, 680, 790
Bme1390I	CCNGG	3 cut(s)	261, 262, 307
Bme18I	GGWCC	3 cut(s)	65, 99, 309
BmeT110I	CYCGRG	2 cut(s)	260, 363
BmgT120I	GGNCC	4 cut(s)	65, 99, 181, 309
BmiI	GGNNCC	2 cut(s)	182, 477
BmrFI	CCNGG	3 cut(s)	261, 262, 307
BmsI	GCATC	4 cut(s)	96, 251, 585, 775
BpiI	GAAGAC	1 cut(s)	414
BpuMI	CCSGG	3 cut(s)	261, 262, 307
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	638
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse1I	ACTGG	1 cut(s)	333
Bse21I	CCTNAGG	1 cut(s)	741
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	2 cut(s)	68, 538
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMII	CTCAG	2 cut(s)	644, 732
BseNI	ACTGG	1 cut(s)	333
BseXI	GCAGC	7 cut(s)	71, 458, 487, 515, 518, 665, 800
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	183, 332
BsiHKCI	CYCGRG	2 cut(s)	260, 363
BsiSI	CCGG	4 cut(s)	97, 261, 307, 639
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	1 cut(s)	563
BsmFI	GGGAC	1 cut(s)	620
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	183, 332
BsoBI	CYCGRG	2 cut(s)	260, 363
Bsp143I	GATC	4 cut(s)	21, 377, 421, 628
BspACI	CCGC	2 cut(s)	82, 312
BspANI	GGCC	2 cut(s)	183, 332
BspCNI	CTCAG	2 cut(s)	645, 733
BspLI	GGNNCC	2 cut(s)	182, 477
BspMAI	CTGCAG	1 cut(s)	505
BspPI	GGATC	3 cut(s)	385, 429, 623
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	4 cut(s)	21, 377, 421, 628
Bst4CI	ACNGT	2 cut(s)	225, 394
Bst6I	CTCTTC	3 cut(s)	148, 194, 472
BstC8I	GCNNGC	2 cut(s)	659, 804
BstDEI	CTNAG	3 cut(s)	399, 653, 741
BstF5I	GGATG	2 cut(s)	68, 538
BstKTI	GATC	4 cut(s)	24, 380, 424, 631
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	4 cut(s)	21, 377, 421, 628
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 311, 506, 684
BstNSI	RCATGY	3 cut(s)	211, 661, 806
BstSCI	CCNGG	3 cut(s)	259, 260, 305
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	7 cut(s)	71, 458, 487, 515, 518, 665, 800
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	421
BstXI	CCANNNNNNTGG	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	421
Bsu36I	CCTNAGG	1 cut(s)	741
BsuRI	GGCC	2 cut(s)	183, 332
BtsCI	GGATG	2 cut(s)	68, 538
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	292, 326
Cac8I	GCNNGC	2 cut(s)	659, 804
Cfr13I	GGNCC	4 cut(s)	65, 99, 181, 309
Cfr9I	CCCGGG	1 cut(s)	260
CpoI	CGGWCCG	1 cut(s)	309
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	737
CspI	CGGWCCG	1 cut(s)	309
CviAII	CATG	8 cut(s)	208, 316, 417, 454, 658, 727, 767, 803
CviQI	GTAC	1 cut(s)	737
DdeI	CTNAG	3 cut(s)	399, 653, 741
DpnI	GATC	4 cut(s)	23, 379, 423, 630
DpnII	GATC	4 cut(s)	21, 377, 421, 628
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	3 cut(s)	148, 194, 472
EarI	CTCTTC	3 cut(s)	148, 194, 472
EciI	GGCGGA	1 cut(s)	301
Eco47I	GGWCC	3 cut(s)	65, 99, 309
Eco81I	CCTNAGG	1 cut(s)	741
Eco88I	CYCGRG	2 cut(s)	260, 363
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	732
FaeI	CATG	8 cut(s)	211, 319, 420, 457, 661, 730, 770, 806
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	8 cut(s)	207, 315, 416, 453, 657, 726, 766, 802
Fnu4HI	GCNGC	7 cut(s)	85, 447, 501, 504, 507, 679, 789
FokI	GGATG	2 cut(s)	55, 545
Fsp4HI	GCNGC	7 cut(s)	85, 447, 501, 504, 507, 679, 789
GluI	GCNGC	7 cut(s)	85, 447, 501, 504, 507, 679, 789
HaeIII	GGCC	2 cut(s)	183, 332
HapII	CCGG	4 cut(s)	97, 261, 307, 639
HgaI	GACGC	1 cut(s)	36
Hin1II	CATG	8 cut(s)	211, 319, 420, 457, 661, 730, 770, 806
HinfI	GANTC	4 cut(s)	51, 491, 536, 571
HpaII	CCGG	4 cut(s)	97, 261, 307, 639
HphI	GGTGA	1 cut(s)	688
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	6 cut(s)	26, 300, 382, 406, 541, 581
Hpy188III	TCNNGA	4 cut(s)	63, 488, 593, 632
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	2 cut(s)	88, 194
HpyCH4III	ACNGT	2 cut(s)	225, 394
HpyCH4V	TGCA	9 cut(s)	87, 242, 290, 446, 503, 661, 730, 788, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 311, 506, 684
HpyF3I	CTNAG	3 cut(s)	399, 653, 741
Hsp92II	CATG	8 cut(s)	211, 319, 420, 457, 661, 730, 770, 806
Kzo9I	GATC	4 cut(s)	21, 377, 421, 628
LmnI	GCTCC	3 cut(s)	475, 665, 757
Lsp1109I	GCAGC	7 cut(s)	71, 458, 487, 515, 518, 665, 800
LweI	GCATC	4 cut(s)	96, 251, 585, 775
MaeIII	GTNAC	4 cut(s)	358, 388, 394, 694
MalI	GATC	4 cut(s)	23, 379, 423, 630
MboI	GATC	4 cut(s)	21, 377, 421, 628
MboII	GAAGA	7 cut(s)	135, 211, 419, 459, 785, 788, 794
MflI	RGATCY	1 cut(s)	421
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	3 cut(s)	319, 348, 560
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	2 cut(s)	485, 565
MmeI	TCCRAC	2 cut(s)	79, 546
MnlI	CCTC	5 cut(s)	70, 119, 151, 523, 736
Mox20I	TGGCCA	1 cut(s)	332
Mph1103I	ATGCAT	1 cut(s)	732
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	3 cut(s)	525, 648, 794
MslI	CAYNNNNRTG	1 cut(s)	365
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	4 cut(s)	97, 261, 307, 639
MspR9I	CCNGG	3 cut(s)	261, 262, 307
Mva1269I	GAATGC	1 cut(s)	307
MwoI	GCNNNNNNNGC	4 cut(s)	93, 311, 506, 684
NciI	CCSGG	3 cut(s)	261, 262, 307
NdeII	GATC	4 cut(s)	21, 377, 421, 628
NlaIII	CATG	8 cut(s)	211, 319, 420, 457, 661, 730, 770, 806
NlaIV	GGNNCC	2 cut(s)	182, 477
NmuCI	GTSAC	2 cut(s)	358, 694
NsiI	ATGCAT	1 cut(s)	732
NspI	RCATGY	3 cut(s)	211, 661, 806
OliI	CACNNNNGTG	1 cut(s)	365
PaeI	GCATGC	2 cut(s)	661, 806
PaeR7I	CTCGAG	1 cut(s)	363
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	51, 536
PflFI	GACNNNGTC	1 cut(s)	30
PkrI	GCNGC	7 cut(s)	86, 448, 502, 505, 508, 680, 790
PleI	GAGTC	2 cut(s)	485, 565
PpsI	GAGTC	2 cut(s)	485, 565
PshBI	ATTAAT	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	182, 477
PspPI	GGNCC	4 cut(s)	65, 99, 181, 309
PspXI	VCTCGAGB	1 cut(s)	363
PstI	CTGCAG	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	421
PsyI	GACNNNGTC	1 cut(s)	30
RsaI	GTAC	1 cut(s)	738
RsaNI	GTAC	1 cut(s)	737
RseI	CAYNNNNRTG	1 cut(s)	365
Rsr2I	CGGWCCG	1 cut(s)	309
RsrII	CGGWCCG	1 cut(s)	309
SaqAI	TTAA	3 cut(s)	525, 648, 794
SatI	GCNGC	7 cut(s)	85, 447, 501, 504, 507, 679, 789
Sau3AI	GATC	4 cut(s)	21, 377, 421, 628
Sau96I	GGNCC	4 cut(s)	65, 99, 181, 309
SchI	GAGTC	2 cut(s)	485, 565
ScrFI	CCNGG	3 cut(s)	261, 262, 307
SetI	ASST	8 cut(s)	80, 104, 502, 523, 689, 742, 747, 754
SfaNI	GCATC	4 cut(s)	96, 251, 585, 775
SfcI	CTRYAG	1 cut(s)	501
Sfr274I	CTCGAG	1 cut(s)	363
SinI	GGWCC	3 cut(s)	65, 99, 309
SlaI	CTCGAG	1 cut(s)	363
SmaI	CCCGGG	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
SphI	GCATGC	2 cut(s)	661, 806
Sse9I	AATT	3 cut(s)	319, 348, 560
SsiI	CCGC	2 cut(s)	82, 312
StyD4I	CCNGG	3 cut(s)	259, 260, 305
TaaI	ACNGT	2 cut(s)	225, 394
TaqI	TCGA	2 cut(s)	364, 489
TasI	AATT	3 cut(s)	319, 348, 560
TfiI	GAWTC	2 cut(s)	51, 536
Tru1I	TTAA	3 cut(s)	525, 648, 794
Tru9I	TTAA	3 cut(s)	525, 648, 794
TscAI	CASTG	2 cut(s)	292, 333
TseFI	GTSAC	2 cut(s)	358, 694
TseI	GCWGC	7 cut(s)	84, 446, 500, 503, 506, 678, 788
Tsp45I	GTSAC	2 cut(s)	358, 694
TspDTI	ATGAA	6 cut(s)	27, 144, 332, 405, 786, 795
TspMI	CCCGGG	1 cut(s)	260
TspRI	CASTG	2 cut(s)	292, 333
Tth111I	GACNNNGTC	1 cut(s)	30
VpaK11BI	GGWCC	3 cut(s)	65, 99, 309
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	1 cut(s)	319
XceI	RCATGY	3 cut(s)	211, 661, 806
XhoI	CTCGAG	1 cut(s)	363
XmaI	CCCGGG	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.