Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011072

Physical Location & Seq

Genomic Coordinates Reverse (-)

33215696 .. 33220565

Gene Structure 4870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG276800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAGCTGAGAGGGGAGAAATGGGATTTGGGCACAACAACCGCACAAAACGTGCTGGGCATACGCTCCAACCTTCTTTTGTTCCCTCAGAAGTTCGTACTTCTCGCGATTTCCTTGTTCCGAAACACAAAAGAAAAAGAAATGAGGGGTTTGGCAAGATTGATCGGACGCAGTCTTTCATCTCACAAAAGATTCCAACCTTCTGGACCATCCACTACCTTCCGCTGCATCTCTCGCCGGACCTATTTCCTCTCTGCTTATTTGGGTCGCCCTATCTCCCCCTCTTCATCTCCTTTCGCTTCTACAAAATGGGGCCTTCTTTCAGGGCAGAGGAGAAGCATGTTTATACAAACACAGTCCACACCCAATCCTGCATCTCTTATGTTTTACCCCGGGAAGCCTGTTATGGAAGTTGGCAGTGCAGACTTTCCGAATGCCCGGTCCGCCATGAATTCCCCACTGGCCAAAACCCTTTATGGAATTGATGGTGTCACTCGAGTGTTTTTTGGCTCAGATTTTGTTACTGTAACTAAGTCAGAAGATACTTCATGGGATCTTTTGAAGCCAGAAATCTTTGCAGCAATCATGGACTTTTACTCTTCTGGGGAGCCACTCTTTCTAGACTCAAAAGCTGCGGCAGCAAAGGACACTGCTATTAATGAGGATGATTCAGAAATAGTTGCCATGATCAAAGAATTGTTGGAGACTCGCATCAGACCAGCAGTTCAAGATGATGGCGGGGACATTGAGTATAAGGGATTTGATCCAGAAACCGGAATAGTTAAACTGAGCATGCAAGGAGCGTGTAGTGGCTGCCCAAGCTCATCAGTCACCCTGAAATCTGGCATTGAAAATATGCTCATGCATTATGTACCTGAGGTAACAAATGACAATCATGCTTTGATTCTCAAGAATGTATATATCTTTTGGACTAGAAGCCTGGTCTGTGGACTAACTGTAGATGCGCCATGCGCGTGCACACACACACAACAACCATTTTCTTATATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005198 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nfu_N NifU

Protein Analysis

337

Amino Acids

37.15

Weight (kDa)

8.15

Isoelectric Point (pI)

50.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nfu_N	PF08712	116 - 202	9.5e-31	Scaffold protein Nfu/NifU N terminal
NifU	PF01106	230 - 295	2e-27	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51390 AT3G20970 AT3G20970
fragaria_vesca	FvH4_1g23510 FvH4_1g23510
malus_domestica	MD04G1028700.v1.1
prunus_persica	Prupe.2G079800_v2.0.a1
pyrus_communis	pycom04g02500
rosa_chinensis	RchiOBHm_Chr2g0118911
rosa_laevigata	RLG00000018435
rosa_multiflora	Rmu_sc0001653.1_g000031 Rmu_sc0003492.1_g000006
rosa_roxburghii	Rroxscaffold_2G00124590 Rroxscaffold_2G00144600
rosa_rugosa	Rorug02G0219500
rosa_samantha	Rh2AG276800 Rh2BG288500 Rh2DG283800 Rh2DG302900
rosa_wichuraiana	Rw2G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	107, 974
AciI	CCGC	5 cut(s)	42, 223, 444, 635, 738
AclWI	GGATC	2 cut(s)	561, 758
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	1 cut(s)	451
AfaI	GTAC	2 cut(s)	99, 873
AfiI	CCNNNNNNNGG	1 cut(s)	773
AgsI	TTSAA	3 cut(s)	562, 728, 851
AjnI	CCWGG	1 cut(s)	939
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AleI	CACNNNNGTG	1 cut(s)	497
AluBI	AGCT	3 cut(s)	7, 632, 822
AluI	AGCT	3 cut(s)	7, 632, 822
Alw21I	GWGCWC	1 cut(s)	980
Alw26I	GTCTC	1 cut(s)	698
Alw44I	GTGCAC	1 cut(s)	976
AlwI	GGATC	2 cut(s)	561, 758
Ama87I	CYCGRG	2 cut(s)	392, 495
AoxI	GGCC	2 cut(s)	313, 462
ApaLI	GTGCAC	1 cut(s)	976
ApeKI	GCWGC	5 cut(s)	225, 578, 632, 638, 813
ApoI	RAATTY	1 cut(s)	451
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AseI	ATTAAT	1 cut(s)	657
AspLEI	GCGC	2 cut(s)	967, 974
AspS9I	GGNCC	4 cut(s)	206, 240, 313, 441
AsuC2I	CCSGG	3 cut(s)	393, 394, 439
AsuHPI	GGTGA	1 cut(s)	823
AvaI	CYCGRG	2 cut(s)	392, 495
AvaII	GGWCC	3 cut(s)	206, 240, 441
AxyI	CCTNAGG	1 cut(s)	876
BaeGI	GKGCMC	2 cut(s)	35, 980
BalI	TGGCCA	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	980
BbvI	GCAGC	5 cut(s)	212, 590, 619, 650, 800
BccI	CCATC	3 cut(s)	217, 479, 728
BciT130I	CCWGG	1 cut(s)	941
BclI	TGATCA	1 cut(s)	687
BcnI	CCSGG	3 cut(s)	393, 394, 439
BcoDI	GTCTC	1 cut(s)	698
BfaI	CTAG	2 cut(s)	620, 933
BfmI	CTRYAG	1 cut(s)	957
BisI	GCNGC	6 cut(s)	226, 579, 633, 636, 639, 814
BlsI	GCNGC	6 cut(s)	227, 580, 634, 637, 640, 815
Bme1390I	CCNGG	4 cut(s)	393, 394, 439, 941
Bme18I	GGWCC	3 cut(s)	206, 240, 441
BmeT110I	CYCGRG	2 cut(s)	392, 495
BmgT120I	GGNCC	4 cut(s)	206, 240, 313, 441
BmiI	GGNNCC	2 cut(s)	314, 609
BmrFI	CCNGG	4 cut(s)	393, 394, 439, 941
BmsI	GCATC	4 cut(s)	237, 383, 720, 952
BpuEI	CTTGAG	1 cut(s)	893
BpuMI	CCSGG	3 cut(s)	393, 394, 439
BsaJI	CCNNGG	2 cut(s)	391, 392
BsaWI	WCCGGW	1 cut(s)	773
Bsc4I	CCNNNNNNNGG	1 cut(s)	773
Bse1I	ACTGG	1 cut(s)	465
Bse21I	CCTNAGG	1 cut(s)	876
BseBI	CCWGG	1 cut(s)	941
BseDI	CCNNGG	2 cut(s)	391, 392
BseGI	GGATG	2 cut(s)	209, 670
BseLI	CCNNNNNNNGG	1 cut(s)	773
BseMII	CTCAG	4 cut(s)	101, 525, 779, 867
BseNI	ACTGG	1 cut(s)	465
BseRI	GAGGAG	1 cut(s)	346
BseSI	GKGCMC	2 cut(s)	35, 980
BseXI	GCAGC	5 cut(s)	212, 590, 619, 650, 800
BseYI	CCCAGC	1 cut(s)	55
BsgI	GTGCAG	1 cut(s)	441
Bsh1236I	CGCG	2 cut(s)	107, 974
BshFI	GGCC	2 cut(s)	315, 464
BsiHKAI	GWGCWC	1 cut(s)	980
BsiHKCI	CYCGRG	2 cut(s)	392, 495
BsiSI	CCGG	4 cut(s)	238, 393, 439, 774
BslFI	GGGAC	1 cut(s)	755
BslI	CCNNNNNNNGG	1 cut(s)	773
BsmAI	GTCTC	1 cut(s)	698
BsmFI	GGGAC	1 cut(s)	755
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	315, 464
BsoBI	CYCGRG	2 cut(s)	392, 495
Bsp1286I	GDGCHC	2 cut(s)	35, 980
Bsp143I	GATC	4 cut(s)	162, 553, 687, 763
Bsp68I	TCGCGA	1 cut(s)	107
BspACI	CCGC	5 cut(s)	42, 223, 444, 635, 738
BspANI	GGCC	2 cut(s)	315, 464
BspCNI	CTCAG	4 cut(s)	100, 524, 780, 868
BspFNI	CGCG	2 cut(s)	107, 974
BspLI	GGNNCC	2 cut(s)	314, 609
BspPI	GGATC	2 cut(s)	561, 758
BsrI	ACTGG	1 cut(s)	465
BssECI	CCNNGG	2 cut(s)	391, 392
BssMI	GATC	4 cut(s)	162, 553, 687, 763
Bst2UI	CCWGG	1 cut(s)	941
Bst4CI	ACNGT	3 cut(s)	357, 526, 958
Bst6I	CTCTTC	2 cut(s)	289, 604
BstC8I	GCNNGC	2 cut(s)	794, 976
BstDEI	CTNAG	6 cut(s)	8, 87, 511, 531, 788, 876
BstF5I	GGATG	2 cut(s)	209, 670
BstFNI	CGCG	2 cut(s)	107, 974
BstHHI	GCGC	2 cut(s)	967, 974
BstKTI	GATC	4 cut(s)	165, 556, 690, 766
BstMAI	GTCTC	1 cut(s)	698
BstMBI	GATC	4 cut(s)	162, 553, 687, 763
BstMWI	GCNNNNNNNGC	5 cut(s)	234, 443, 638, 819, 971
BstNI	CCWGG	1 cut(s)	941
BstNSI	RCATGY	2 cut(s)	343, 796
BstSCI	CCNGG	4 cut(s)	391, 392, 437, 939
BstSFI	CTRYAG	1 cut(s)	957
BstSLI	GKGCMC	2 cut(s)	35, 980
BstUI	CGCG	2 cut(s)	107, 974
BstV1I	GCAGC	5 cut(s)	212, 590, 619, 650, 800
BstX2I	RGATCY	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	553
Bsu36I	CCTNAGG	1 cut(s)	876
BsuRI	GGCC	2 cut(s)	315, 464
BtsCI	GGATG	2 cut(s)	209, 670
BtsI	GCAGTG	2 cut(s)	424, 648
BtsIMutI	CAGTG	3 cut(s)	424, 458, 648
BtuMI	TCGCGA	1 cut(s)	107
Cac8I	GCNNGC	2 cut(s)	794, 976
CfoI	GCGC	2 cut(s)	967, 974
Cfr13I	GGNCC	4 cut(s)	206, 240, 313, 441
Cfr9I	CCCGGG	1 cut(s)	392
CpoI	CGGWCCG	1 cut(s)	441
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	98, 872
CspI	CGGWCCG	1 cut(s)	441
CviAII	CATG	9 cut(s)	340, 448, 549, 586, 685, 793, 862, 896, 969
CviQI	GTAC	2 cut(s)	98, 872
DdeI	CTNAG	6 cut(s)	8, 87, 511, 531, 788, 876
DpnI	GATC	4 cut(s)	164, 555, 689, 765
DpnII	GATC	4 cut(s)	162, 553, 687, 763
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	2 cut(s)	289, 604
EarI	CTCTTC	2 cut(s)	289, 604
EciI	GGCGGA	1 cut(s)	433
Eco47I	GGWCC	3 cut(s)	206, 240, 441
Eco81I	CCTNAGG	1 cut(s)	876
Eco88I	CYCGRG	2 cut(s)	392, 495
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRI	GAATTC	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	939
EcoT22I	ATGCAT	1 cut(s)	867
FaeI	CATG	9 cut(s)	343, 451, 552, 589, 688, 796, 865, 899, 972
FaqI	GGGAC	1 cut(s)	755
FatI	CATG	9 cut(s)	339, 447, 548, 585, 684, 792, 861, 895, 968
FauI	CCCGC	1 cut(s)	731
FbaI	TGATCA	1 cut(s)	687
Fnu4HI	GCNGC	6 cut(s)	226, 579, 633, 636, 639, 814
FokI	GGATG	2 cut(s)	196, 677
Fsp4HI	GCNGC	6 cut(s)	226, 579, 633, 636, 639, 814
FspBI	CTAG	2 cut(s)	620, 933
GlaI	GCGC	2 cut(s)	966, 973
GluI	GCNGC	6 cut(s)	226, 579, 633, 636, 639, 814
GsaI	CCCAGC	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	315, 464
HapII	CCGG	4 cut(s)	238, 393, 439, 774
HgaI	GACGC	1 cut(s)	177
HhaI	GCGC	2 cut(s)	967, 974
Hin1II	CATG	9 cut(s)	343, 451, 552, 589, 688, 796, 865, 899, 972
Hin6I	GCGC	2 cut(s)	965, 972
HinP1I	GCGC	2 cut(s)	965, 972
HinfI	GANTC	5 cut(s)	192, 623, 668, 706, 904
HpaII	CCGG	4 cut(s)	238, 393, 439, 774
HphI	GGTGA	1 cut(s)	823
Hpy166II	GTNNAC	3 cut(s)	360, 950, 978
Hpy188I	TCNGA	8 cut(s)	90, 122, 167, 432, 514, 538, 673, 716
Hpy188III	TCNNGA	6 cut(s)	106, 204, 620, 728, 767, 910
Hpy8I	GTNNAC	3 cut(s)	360, 950, 978
HpyAV	CCTTC	4 cut(s)	83, 210, 229, 326
HpyCH4III	ACNGT	3 cut(s)	357, 526, 958
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	7 cut(s)	228, 374, 422, 578, 796, 865, 978
HpyF10VI	GCNNNNNNNGC	5 cut(s)	234, 443, 638, 819, 971
HpyF3I	CTNAG	6 cut(s)	8, 87, 511, 531, 788, 876
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	9 cut(s)	343, 451, 552, 589, 688, 796, 865, 899, 972
HspAI	GCGC	2 cut(s)	965, 972
Ksp22I	TGATCA	1 cut(s)	687
Kzo9I	GATC	4 cut(s)	162, 553, 687, 763
LmnI	GCTCC	4 cut(s)	4, 71, 607, 800
Lsp1109I	GCAGC	5 cut(s)	212, 590, 619, 650, 800
LweI	GCATC	4 cut(s)	237, 383, 720, 952
MaeI	CTAG	2 cut(s)	620, 933
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	5 cut(s)	490, 520, 526, 829, 880
MalI	GATC	4 cut(s)	164, 555, 689, 765
MboI	GATC	4 cut(s)	162, 553, 687, 763
MboII	GAAGA	3 cut(s)	276, 551, 591
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	2 cut(s)	35, 980
MlsI	TGGCCA	1 cut(s)	464
MluCI	AATT	3 cut(s)	451, 480, 695
MluNI	TGGCCA	1 cut(s)	464
MlyI	GAGTC	2 cut(s)	617, 700
MmeI	TCCRAC	3 cut(s)	93, 220, 681
MnlI	CCTC	8 cut(s)	5, 96, 138, 260, 292, 324, 655, 871
Mox20I	TGGCCA	1 cut(s)	464
Mph1103I	ATGCAT	1 cut(s)	867
MscI	TGGCCA	1 cut(s)	464
MseI	TTAA	3 cut(s)	657, 783, 1012
MslI	CAYNNNNRTG	2 cut(s)	497, 973
Msp20I	TGGCCA	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	4 cut(s)	238, 393, 439, 774
MspR9I	CCNGG	4 cut(s)	393, 394, 439, 941
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	1 cut(s)	941
MvnI	CGCG	2 cut(s)	107, 974
MwoI	GCNNNNNNNGC	5 cut(s)	234, 443, 638, 819, 971
NciI	CCSGG	3 cut(s)	393, 394, 439
NdeII	GATC	4 cut(s)	162, 553, 687, 763
NlaIII	CATG	9 cut(s)	343, 451, 552, 589, 688, 796, 865, 899, 972
NlaIV	GGNNCC	2 cut(s)	314, 609
NmuCI	GTSAC	2 cut(s)	490, 829
NruI	TCGCGA	1 cut(s)	107
NsiI	ATGCAT	1 cut(s)	867
NspI	RCATGY	2 cut(s)	343, 796
OliI	CACNNNNGTG	1 cut(s)	497
PaeI	GCATGC	1 cut(s)	796
PaeR7I	CTCGAG	1 cut(s)	495
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	3 cut(s)	192, 668, 904
PflFI	GACNNNGTC	1 cut(s)	171
PkrI	GCNGC	6 cut(s)	227, 580, 634, 637, 640, 815
PleI	GAGTC	2 cut(s)	617, 700
PpsI	GAGTC	2 cut(s)	617, 700
PshBI	ATTAAT	1 cut(s)	657
Psp6I	CCWGG	1 cut(s)	939
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	939
PspN4I	GGNNCC	2 cut(s)	314, 609
PspPI	GGNCC	4 cut(s)	206, 240, 313, 441
PspXI	VCTCGAGB	1 cut(s)	495
PsuI	RGATCY	1 cut(s)	553
PsyI	GACNNNGTC	1 cut(s)	171
RruI	TCGCGA	1 cut(s)	107
RsaI	GTAC	2 cut(s)	99, 873
RsaNI	GTAC	2 cut(s)	98, 872
RseI	CAYNNNNRTG	2 cut(s)	497, 973
Rsr2I	CGGWCCG	1 cut(s)	441
RsrII	CGGWCCG	1 cut(s)	441
SaqAI	TTAA	3 cut(s)	657, 783, 1012
SatI	GCNGC	6 cut(s)	226, 579, 633, 636, 639, 814
Sau3AI	GATC	4 cut(s)	162, 553, 687, 763
Sau96I	GGNCC	4 cut(s)	206, 240, 313, 441
SchI	GAGTC	2 cut(s)	617, 700
ScrFI	CCNGG	4 cut(s)	393, 394, 439, 941
SduI	GDGCHC	2 cut(s)	35, 980
SfaNI	GCATC	4 cut(s)	237, 383, 720, 952
SfcI	CTRYAG	1 cut(s)	957
Sfr274I	CTCGAG	1 cut(s)	495
SinI	GGWCC	3 cut(s)	206, 240, 441
SlaI	CTCGAG	1 cut(s)	495
SmaI	CCCGGG	1 cut(s)	394
SmiMI	CAYNNNNRTG	2 cut(s)	497, 973
SmlI	CTYRAG	2 cut(s)	495, 908
SmoI	CTYRAG	2 cut(s)	495, 908
SphI	GCATGC	1 cut(s)	796
Sse9I	AATT	3 cut(s)	451, 480, 695
SsiI	CCGC	5 cut(s)	42, 223, 444, 635, 738
SspMI	CTAG	2 cut(s)	620, 933
StyD4I	CCNGG	4 cut(s)	391, 392, 437, 939
TaaI	ACNGT	3 cut(s)	357, 526, 958
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	496
TasI	AATT	3 cut(s)	451, 480, 695
TauI	GCSGC	1 cut(s)	638
TfiI	GAWTC	3 cut(s)	192, 668, 904
Tru1I	TTAA	3 cut(s)	657, 783, 1012
Tru9I	TTAA	3 cut(s)	657, 783, 1012
TscAI	CASTG	3 cut(s)	424, 465, 655
TseFI	GTSAC	2 cut(s)	490, 829
TseI	GCWGC	5 cut(s)	225, 578, 632, 638, 813
Tsp45I	GTSAC	2 cut(s)	490, 829
TspDTI	ATGAA	4 cut(s)	168, 276, 464, 537
TspMI	CCCGGG	1 cut(s)	392
TspRI	CASTG	3 cut(s)	424, 465, 655
Tth111I	GACNNNGTC	1 cut(s)	171
VneI	GTGCAC	1 cut(s)	976
VpaK11BI	GGWCC	3 cut(s)	206, 240, 441
VspI	ATTAAT	1 cut(s)	657
XapI	RAATTY	1 cut(s)	451
XbaI	TCTAGA	1 cut(s)	619
XceI	RCATGY	2 cut(s)	343, 796
XhoI	CTCGAG	1 cut(s)	495
XmaI	CCCGGG	1 cut(s)	392
XspI	CTAG	2 cut(s)	620, 933
Zsp2I	ATGCAT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.