Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0011072

Physical Location & Seq

Genomic Coordinates Forward (+)

2234079 .. 2235863

Gene Structure 1785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAGAGGGCTACGAAGATTGCTTGGACGAAGTCTTTCGTCTCACACAAGGTGCCAACCTCCTCGGCATCGCAATGGCACCCAGTTCATCTCTCGCCGAACCTATTTCCTATCTGCTCATTCAGCTCCCACGACGTCGTACCTGGCTCACAACAACTCCCCCTTTTCCGATGCATCTCCTTTCAATTCTCTGAAATGGGGCCTTCTCGGCGGGCAGAAGAGAAGCATGTTTATCCAAACTCAATCCACACCCAACCCTGCATCTCACATGTTTTATCCTGGGAAACCCGTTATGGAAGTTGGCAGTGCAGACTTCCCGAATGCTCGTTCGGCCATGAATTCACCACTTGCCAAAGCCCTTTATGGAATTGATGGAGTCACTCGAGTGTTTTATGGATCAGATTTCGTTACTGTAACAAAATCTGAAGATACTTCTTGGGATCTATTGAAGCCTGAAATCTTTGCTGCAATCATGGATTTTTATTCTTCTGGGCAGCCACTCTTTCTAGACGAAAAAACTGCATCAGCAATGGACACAGCTATTCAAGAAGTATGTCATCAAATTTCTCTCTGTGAACTTTATAAGTTTTGGGGCCAACATGTTAACAGAGCGATTAGATCAATGTTTTACCTTTGCTTTGAAGATATTTTCATTTTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005198 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nfu_N NifU

Protein Analysis

221

Amino Acids

24.85

Weight (kDa)

9.1

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51390 AT3G20970 AT3G20970
fragaria_vesca	FvH4_1g23510 FvH4_1g23510
malus_domestica	MD04G1028700.v1.1
prunus_persica	Prupe.2G079800_v2.0.a1
pyrus_communis	pycom04g02500
rosa_chinensis	RchiOBHm_Chr2g0118911
rosa_laevigata	RLG00000018435
rosa_multiflora	Rmu_sc0001653.1_g000031 Rmu_sc0003492.1_g000006
rosa_roxburghii	Rroxscaffold_2G00124590 Rroxscaffold_2G00144600
rosa_rugosa	Rorug02G0219500
rosa_samantha	Rh2AG276800 Rh2BG288500 Rh2DG283800 Rh2DG302900
rosa_wichuraiana	Rw2G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	582
AatII	GACGTC	1 cut(s)	137
AccB1I	GGYRCC	2 cut(s)	51, 77
AciI	CCGC	1 cut(s)	210
AclWI	GGATC	2 cut(s)	403, 447
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	2 cut(s)	337, 561
AcuI	CTGAAG	1 cut(s)	444
AcyI	GRCGYC	1 cut(s)	134
AdeI	CACNNNGTG	1 cut(s)	51
AfaI	GTAC	1 cut(s)	140
AflIII	ACRYGT	2 cut(s)	267, 598
AgsI	TTSAA	4 cut(s)	184, 448, 545, 641
AjnI	CCWGG	2 cut(s)	141, 277
AleI	CACNNNNGTG	1 cut(s)	383
AluBI	AGCT	2 cut(s)	125, 539
AluI	AGCT	2 cut(s)	125, 539
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	2 cut(s)	403, 447
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	3 cut(s)	199, 330, 592
ApeKI	GCWGC	2 cut(s)	464, 493
ApoI	RAATTY	2 cut(s)	337, 561
Asp700I	GAANNNNTTC	1 cut(s)	34
AspS9I	GGNCC	2 cut(s)	199, 592
AsuHPI	GGTGA	1 cut(s)	333
AvaI	CYCGRG	1 cut(s)	381
BanI	GGYRCC	2 cut(s)	51, 77
BbvI	GCAGC	2 cut(s)	451, 505
BccI	CCATC	1 cut(s)	365
BcgI	CGANNNNNNTGC	2 cut(s)	500, 534
BciT130I	CCWGG	2 cut(s)	143, 279
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	506
BglI	GCCNNNNNGGC	1 cut(s)	207
BisI	GCNGC	2 cut(s)	465, 494
BlsI	GCNGC	2 cut(s)	466, 495
Bme1390I	CCNGG	2 cut(s)	143, 279
BmeT110I	CYCGRG	1 cut(s)	381
BmgT120I	GGNCC	2 cut(s)	199, 592
BmiI	GGNNCC	4 cut(s)	53, 79, 200, 593
BmrFI	CCNGG	2 cut(s)	143, 279
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	5 cut(s)	76, 160, 182, 269, 530
BmuI	ACTGGG	1 cut(s)	76
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	62, 278
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bse1I	ACTGG	1 cut(s)	82
Bse3DI	GCAATG	2 cut(s)	79, 534
BseBI	CCWGG	2 cut(s)	143, 279
BseDI	CCNNGG	2 cut(s)	62, 278
BseMI	GCAATG	2 cut(s)	79, 534
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	451, 505
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	3 cut(s)	201, 332, 594
BshNI	GGYRCC	2 cut(s)	51, 77
BsiHKCI	CYCGRG	1 cut(s)	381
BsmAI	GTCTC	1 cut(s)	45
BsmBI	CGTCTC	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	3 cut(s)	201, 332, 594
BsoBI	CYCGRG	1 cut(s)	381
Bsp143I	GATC	3 cut(s)	395, 439, 617
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	3 cut(s)	201, 332, 594
BspLI	GGNNCC	4 cut(s)	53, 79, 200, 593
BspPI	GGATC	2 cut(s)	403, 447
BspT107I	GGYRCC	2 cut(s)	51, 77
BsrDI	GCAATG	2 cut(s)	79, 534
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	62, 278
BssMI	GATC	3 cut(s)	395, 439, 617
BssNI	GRCGYC	1 cut(s)	134
Bst2UI	CCWGG	2 cut(s)	143, 279
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	212
BstKTI	GATC	3 cut(s)	398, 442, 620
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	3 cut(s)	395, 439, 617
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 207, 329
BstNI	CCWGG	2 cut(s)	143, 279
BstNSI	RCATGY	3 cut(s)	229, 271, 602
BstSCI	CCNGG	2 cut(s)	141, 277
BstV1I	GCAGC	2 cut(s)	451, 505
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuRI	GGCC	3 cut(s)	201, 332, 594
BtgZI	GCGATG	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	212
Cfr13I	GGNCC	2 cut(s)	199, 592
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	5 cut(s)	226, 268, 334, 472, 599
CviQI	GTAC	1 cut(s)	139
DpnI	GATC	3 cut(s)	397, 441, 619
DpnII	GATC	3 cut(s)	395, 439, 617
DraIII	CACNNNGTG	1 cut(s)	51
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	337
EcoRII	CCWGG	2 cut(s)	141, 277
EcoT22I	ATGCAT	1 cut(s)	175
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	5 cut(s)	229, 271, 337, 475, 602
FatI	CATG	5 cut(s)	225, 267, 333, 471, 598
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	2 cut(s)	465, 494
Fsp4HI	GCNGC	2 cut(s)	465, 494
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	2 cut(s)	465, 494
HaeIII	GGCC	3 cut(s)	201, 332, 594
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	5 cut(s)	229, 271, 337, 475, 602
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	1 cut(s)	375
HpaI	GTTAAC	1 cut(s)	604
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	2 cut(s)	575, 604
Hpy188I	TCNGA	4 cut(s)	169, 192, 400, 424
Hpy188III	TCNNGA	3 cut(s)	316, 506, 545
Hpy8I	GTNNAC	2 cut(s)	575, 604
Hpy99I	CGWCG	2 cut(s)	136, 139
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	5 cut(s)	173, 260, 308, 467, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 207, 329
HpySE526I	ACGT	1 cut(s)	134
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	5 cut(s)	229, 271, 337, 475, 602
KspAI	GTTAAC	1 cut(s)	604
Kzo9I	GATC	3 cut(s)	395, 439, 617
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	8 cut(s)	95, 128, 155, 264, 270, 291, 465, 474
Lsp1109I	GCAGC	2 cut(s)	451, 505
LweI	GCATC	5 cut(s)	76, 160, 182, 269, 530
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	3 cut(s)	376, 406, 412
MalI	GATC	3 cut(s)	397, 441, 619
MboI	GATC	3 cut(s)	395, 439, 617
MboII	GAAGA	5 cut(s)	27, 229, 437, 477, 653
MflI	RGATCY	1 cut(s)	439
MluCI	AATT	4 cut(s)	184, 337, 366, 561
MlyI	GAGTC	1 cut(s)	384
MnlI	CCTC	2 cut(s)	69, 72
Mph1103I	ATGCAT	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	34
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	2 cut(s)	72, 383
MspR9I	CCNGG	2 cut(s)	143, 279
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	2 cut(s)	143, 279
MwoI	GCNNNNNNNGC	3 cut(s)	122, 207, 329
NdeII	GATC	3 cut(s)	395, 439, 617
NlaIII	CATG	5 cut(s)	229, 271, 337, 475, 602
NlaIV	GGNNCC	4 cut(s)	53, 79, 200, 593
NmeAIII	GCCGAG	2 cut(s)	43, 186
NmuCI	GTSAC	1 cut(s)	376
NsiI	ATGCAT	1 cut(s)	175
NspI	RCATGY	3 cut(s)	229, 271, 602
OliI	CACNNNNGTG	1 cut(s)	383
PaeR7I	CTCGAG	1 cut(s)	381
PciI	ACATGT	2 cut(s)	267, 598
PctI	GAATGC	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	34
PflFI	GACNNNGTC	1 cut(s)	30
PkrI	GCNGC	2 cut(s)	466, 495
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PscI	ACATGT	2 cut(s)	267, 598
PsiI	TTATAA	1 cut(s)	582
Psp6I	CCWGG	2 cut(s)	141, 277
PspGI	CCWGG	2 cut(s)	141, 277
PspN4I	GGNNCC	4 cut(s)	53, 79, 200, 593
PspPI	GGNCC	2 cut(s)	199, 592
PspXI	VCTCGAGB	1 cut(s)	381
PsuI	RGATCY	1 cut(s)	439
PsyI	GACNNNGTC	1 cut(s)	30
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	2 cut(s)	72, 383
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	2 cut(s)	465, 494
Sau3AI	GATC	3 cut(s)	395, 439, 617
Sau96I	GGNCC	2 cut(s)	199, 592
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	2 cut(s)	143, 279
SetI	ASST	8 cut(s)	53, 61, 104, 127, 137, 144, 541, 633
SfaNI	GCATC	5 cut(s)	76, 160, 182, 269, 530
Sfr274I	CTCGAG	1 cut(s)	381
SlaI	CTCGAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	2 cut(s)	72, 383
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
Sse9I	AATT	4 cut(s)	184, 337, 366, 561
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	1 cut(s)	506
StyD4I	CCNGG	2 cut(s)	141, 277
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	1 cut(s)	137
TaqI	TCGA	1 cut(s)	382
TasI	AATT	4 cut(s)	184, 337, 366, 561
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	464, 493
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	3 cut(s)	76, 350, 640
TspRI	CASTG	1 cut(s)	310
Tth111I	GACNNNGTC	1 cut(s)	30
XapI	RAATTY	2 cut(s)	337, 561
XbaI	TCTAGA	1 cut(s)	505
XceI	RCATGY	3 cut(s)	229, 271, 602
XhoI	CTCGAG	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	1 cut(s)	506
ZraI	GACGTC	1 cut(s)	135
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.