Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011072

Physical Location & Seq

Genomic Coordinates Reverse (-)

32528737 .. 32534972

Gene Structure 6236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG283800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGGGGTTTGGCAAGATTGATCGGACGCAGTCTTTCATCTCACAAAAGATTCCAACCCTCTGGACCATCCACTACCTTCCGCTGCATCTCTCGCCGGACCTATTTCCTCTCTGCTTATTTGGGTCGCCGTATCTCCCCCTCTTCTCCTGCTTCATCTCCTTTCGCTTCTACAAAATGGGGCCTTCTTTCAGGGCAGAAGAGAAGCATGTTTATACAAACACAGTCCACACCCAATCCTGCATCTCTTATGTTTTATCCCGGGAAGCCTGTTATGGAAGTTGGCAGTGCAGACTTTCCGAATGCCCGGTCCGCCATGAATTCCCCACTGGCCAAAGCCCTTTATGGAATTGATGGTGTCACTCGAGTGTTTTTTGGATCAGATTTTGTTACTGTAACTAAGTCAGAAGACACTTCATGGGATCTTTTGAAGCCAGAAATCTTTGCAGCAATCATGGACTTTTACTCTTCTGGGGAGCCACTCTTTCTCGACTCAAAAGCTGCAGCAGCAAAGGACACAGCTATTAATGAGGATGATTCAGAAATAGTTGCCATCAAAGAATTGTTGGAGACTCGCATCAGACCAGCAGTTCAAGATGATGGTGGGGACATTGAGTATAAGGGATTTGATCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005198 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nfu_N NifU

Protein Analysis

211

Amino Acids

23.11

Weight (kDa)

8.64

Isoelectric Point (pI)

58.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nfu_N	PF08712	72 - 158	3e-31	Scaffold protein Nfu/NifU N terminal
NifU	PF01106	185 - 210	2e-06	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51390 AT3G20970 AT3G20970
fragaria_vesca	FvH4_1g23510 FvH4_1g23510
malus_domestica	MD04G1028700.v1.1
prunus_persica	Prupe.2G079800_v2.0.a1
pyrus_communis	pycom04g02500
rosa_chinensis	RchiOBHm_Chr2g0118911
rosa_laevigata	RLG00000018435
rosa_multiflora	Rmu_sc0001653.1_g000031 Rmu_sc0003492.1_g000006
rosa_roxburghii	Rroxscaffold_2G00124590 Rroxscaffold_2G00144600
rosa_rugosa	Rorug02G0219500
rosa_samantha	Rh2AG276800 Rh2BG288500 Rh2DG283800 Rh2DG302900
rosa_wichuraiana	Rw2G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	82, 312
AclWI	GGATC	3 cut(s)	385, 429, 623
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	430, 593
AleI	CACNNNNGTG	1 cut(s)	365
AluBI	AGCT	2 cut(s)	500, 521
AluI	AGCT	2 cut(s)	500, 521
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	3 cut(s)	385, 429, 623
Ama87I	CYCGRG	2 cut(s)	260, 363
AoxI	GGCC	2 cut(s)	181, 330
ApeKI	GCWGC	5 cut(s)	84, 446, 500, 503, 506
ApoI	RAATTY	1 cut(s)	319
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AseI	ATTAAT	1 cut(s)	525
AspS9I	GGNCC	4 cut(s)	65, 99, 181, 309
AsuC2I	CCSGG	3 cut(s)	261, 262, 307
AvaI	CYCGRG	2 cut(s)	260, 363
AvaII	GGWCC	3 cut(s)	65, 99, 309
BalI	TGGCCA	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	414
BbvI	GCAGC	5 cut(s)	71, 458, 487, 515, 518
BccI	CCATC	4 cut(s)	76, 347, 560, 593
BceAI	ACGGC	1 cut(s)	114
BcnI	CCSGG	3 cut(s)	261, 262, 307
BcoDI	GTCTC	1 cut(s)	563
BfmI	CTRYAG	1 cut(s)	501
BisI	GCNGC	5 cut(s)	85, 447, 501, 504, 507
BlsI	GCNGC	5 cut(s)	86, 448, 502, 505, 508
Bme1390I	CCNGG	3 cut(s)	261, 262, 307
Bme18I	GGWCC	3 cut(s)	65, 99, 309
BmeT110I	CYCGRG	2 cut(s)	260, 363
BmgT120I	GGNCC	4 cut(s)	65, 99, 181, 309
BmiI	GGNNCC	2 cut(s)	182, 477
BmrFI	CCNGG	3 cut(s)	261, 262, 307
BmsI	GCATC	3 cut(s)	96, 251, 585
BpiI	GAAGAC	1 cut(s)	414
BpuMI	CCSGG	3 cut(s)	261, 262, 307
BsaJI	CCNNGG	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	2 cut(s)	68, 538
BseNI	ACTGG	1 cut(s)	333
BseXI	GCAGC	5 cut(s)	71, 458, 487, 515, 518
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	183, 332
BsiHKCI	CYCGRG	2 cut(s)	260, 363
BsiSI	CCGG	3 cut(s)	97, 261, 307
BslFI	GGGAC	1 cut(s)	620
BsmAI	GTCTC	1 cut(s)	563
BsmFI	GGGAC	1 cut(s)	620
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	183, 332
BsoBI	CYCGRG	2 cut(s)	260, 363
Bsp143I	GATC	4 cut(s)	21, 377, 421, 628
BspACI	CCGC	2 cut(s)	82, 312
BspANI	GGCC	2 cut(s)	183, 332
BspLI	GGNNCC	2 cut(s)	182, 477
BspMAI	CTGCAG	1 cut(s)	505
BspPI	GGATC	3 cut(s)	385, 429, 623
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	4 cut(s)	21, 377, 421, 628
Bst4CI	ACNGT	2 cut(s)	225, 394
Bst6I	CTCTTC	3 cut(s)	148, 194, 472
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	2 cut(s)	68, 538
BstKTI	GATC	4 cut(s)	24, 380, 424, 631
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	4 cut(s)	21, 377, 421, 628
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 311, 506
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	3 cut(s)	259, 260, 305
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	5 cut(s)	71, 458, 487, 515, 518
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	421
BstXI	CCANNNNNNTGG	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	2 cut(s)	183, 332
BtsCI	GGATG	2 cut(s)	68, 538
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	292, 326
Cfr13I	GGNCC	4 cut(s)	65, 99, 181, 309
Cfr9I	CCCGGG	1 cut(s)	260
CpoI	CGGWCCG	1 cut(s)	309
CseI	GACGC	1 cut(s)	36
CspI	CGGWCCG	1 cut(s)	309
CviAII	CATG	4 cut(s)	208, 316, 417, 454
CviJI	RGCY	8 cut(s)	183, 268, 332, 338, 433, 478, 500, 521
CviKI_1	RGCY	8 cut(s)	183, 268, 332, 338, 433, 478, 500, 521
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	4 cut(s)	23, 379, 423, 630
DpnII	GATC	4 cut(s)	21, 377, 421, 628
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	3 cut(s)	148, 194, 472
EarI	CTCTTC	3 cut(s)	148, 194, 472
EciI	GGCGGA	1 cut(s)	301
Eco47I	GGWCC	3 cut(s)	65, 99, 309
Eco88I	CYCGRG	2 cut(s)	260, 363
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	319
FaeI	CATG	4 cut(s)	211, 319, 420, 457
FaiI	YATR	9 cut(s)	209, 215, 251, 275, 317, 345, 418, 455, 618
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	4 cut(s)	207, 315, 416, 453
Fnu4HI	GCNGC	5 cut(s)	85, 447, 501, 504, 507
FokI	GGATG	2 cut(s)	55, 545
Fsp4HI	GCNGC	5 cut(s)	85, 447, 501, 504, 507
GluI	GCNGC	5 cut(s)	85, 447, 501, 504, 507
HaeIII	GGCC	2 cut(s)	183, 332
HapII	CCGG	3 cut(s)	97, 261, 307
HgaI	GACGC	1 cut(s)	36
Hin1II	CATG	4 cut(s)	211, 319, 420, 457
HinfI	GANTC	4 cut(s)	51, 491, 536, 571
HpaII	CCGG	3 cut(s)	97, 261, 307
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	6 cut(s)	26, 300, 382, 406, 541, 581
Hpy188III	TCNNGA	3 cut(s)	63, 488, 593
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	2 cut(s)	88, 194
HpyCH4III	ACNGT	2 cut(s)	225, 394
HpyCH4V	TGCA	5 cut(s)	87, 242, 290, 446, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 311, 506
HpyF3I	CTNAG	1 cut(s)	399
Hsp92II	CATG	4 cut(s)	211, 319, 420, 457
Kzo9I	GATC	4 cut(s)	21, 377, 421, 628
LmnI	GCTCC	1 cut(s)	475
Lsp1109I	GCAGC	5 cut(s)	71, 458, 487, 515, 518
LweI	GCATC	3 cut(s)	96, 251, 585
MaeIII	GTNAC	3 cut(s)	358, 388, 394
MalI	GATC	4 cut(s)	23, 379, 423, 630
MboI	GATC	4 cut(s)	21, 377, 421, 628
MboII	GAAGA	4 cut(s)	135, 211, 419, 459
MflI	RGATCY	1 cut(s)	421
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	3 cut(s)	319, 348, 560
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	2 cut(s)	485, 565
MmeI	TCCRAC	2 cut(s)	79, 546
MnlI	CCTC	4 cut(s)	70, 119, 151, 523
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	365
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	3 cut(s)	97, 261, 307
MspR9I	CCNGG	3 cut(s)	261, 262, 307
Mva1269I	GAATGC	1 cut(s)	307
MwoI	GCNNNNNNNGC	3 cut(s)	93, 311, 506
NciI	CCSGG	3 cut(s)	261, 262, 307
NdeII	GATC	4 cut(s)	21, 377, 421, 628
NlaIII	CATG	4 cut(s)	211, 319, 420, 457
NlaIV	GGNNCC	2 cut(s)	182, 477
NmuCI	GTSAC	1 cut(s)	358
NspI	RCATGY	1 cut(s)	211
OliI	CACNNNNGTG	1 cut(s)	365
PaeR7I	CTCGAG	1 cut(s)	363
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	51, 536
PflFI	GACNNNGTC	1 cut(s)	30
PkrI	GCNGC	5 cut(s)	86, 448, 502, 505, 508
PleI	GAGTC	2 cut(s)	485, 565
PpsI	GAGTC	2 cut(s)	485, 565
PshBI	ATTAAT	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	182, 477
PspPI	GGNCC	4 cut(s)	65, 99, 181, 309
PspXI	VCTCGAGB	1 cut(s)	363
PstI	CTGCAG	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	421
PsyI	GACNNNGTC	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	365
Rsr2I	CGGWCCG	1 cut(s)	309
RsrII	CGGWCCG	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	5 cut(s)	85, 447, 501, 504, 507
Sau3AI	GATC	4 cut(s)	21, 377, 421, 628
Sau96I	GGNCC	4 cut(s)	65, 99, 181, 309
SchI	GAGTC	2 cut(s)	485, 565
ScrFI	CCNGG	3 cut(s)	261, 262, 307
SetI	ASST	4 cut(s)	80, 104, 502, 523
SfaNI	GCATC	3 cut(s)	96, 251, 585
SfcI	CTRYAG	1 cut(s)	501
Sfr274I	CTCGAG	1 cut(s)	363
SinI	GGWCC	3 cut(s)	65, 99, 309
SlaI	CTCGAG	1 cut(s)	363
SmaI	CCCGGG	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	3 cut(s)	319, 348, 560
SsiI	CCGC	2 cut(s)	82, 312
StyD4I	CCNGG	3 cut(s)	259, 260, 305
TaaI	ACNGT	2 cut(s)	225, 394
TaqI	TCGA	2 cut(s)	364, 489
TasI	AATT	3 cut(s)	319, 348, 560
TfiI	GAWTC	2 cut(s)	51, 536
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	2 cut(s)	292, 333
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	5 cut(s)	84, 446, 500, 503, 506
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	4 cut(s)	27, 144, 332, 405
TspGWI	ACGGA	1 cut(s)	621
TspMI	CCCGGG	1 cut(s)	260
TspRI	CASTG	2 cut(s)	292, 333
Tth111I	GACNNNGTC	1 cut(s)	30
VpaK11BI	GGWCC	3 cut(s)	65, 99, 309
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	1 cut(s)	319
XceI	RCATGY	1 cut(s)	211
XhoI	CTCGAG	1 cut(s)	363
XmaI	CCCGGG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.