Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011072

Physical Location & Seq

Genomic Coordinates Forward (+)

12196363 .. 12202474

Gene Structure 6112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G079800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAGAGGGTTACGAAGATTGGTTGGACGAAGTCTTTCATCTGACAGAGGATGCGAAGCTTCTGGACAATTTCATGGCTTCCGATTCATTTCTCGCCGGACCTATTTGCTATCTGCTTATTCACCTGCCACGACGTCGTATCTGGGTCACCATAACTCCCCCTTTTCGTCTTCTGAATCTCCTTTCACTTCTATGAAATGGGGCTTTCTCGGTGGGCAGAAGAGAAGCATGTTTATTCAAACTCAATCCACACCCAACCCTGCATCTCTTATGTTTTATCCTGGGAAGCCTGTTATGGAAGTTGGCAGTGCCGACTTTCCGAATGCCCGTTCGGCCATGAATTCACCCCTGGCCAAAGCCCTTTATGGAATTGATGGAATTACTCGAGTGTTTTATGGATCAGATTTTGTTACTGTAACAAAGTCAGAAGATGCTTCTTGGGATCTTTTGAAGCCTGAAATCTTTGCAGCAATCATGGACTTCTATTCTTCTGGGCAGTCACTCTTTCTGGACTCAAAAACTGCATCAGCGATGGACACTGCTATTCAAGAAGATGATTCAGAAATCATTGCAATGATCAAAGAATTGTTGGAGACTCGCATCCGACCAGCAGTGCAAGATGATGGTGGCGACATTGAGTATAGGGGATTTGATCCAGAAACTGGAATAGTTAAATTGAGAATGCAAGGAGCATGCAGTGGCTGCCCAAGCTCATCAGTCACCCTGAAATCTGGCATTGAAAATATGCTAATGCATTATGTACCTGAGGTCAAAAGTGTAGAGCAAGAACACGATGCTGATGATGAAGGAGCAGCACTAACGAGTCAGATGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005198 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nfu_N NifU

Protein Analysis

279

Amino Acids

30.49

Weight (kDa)

5.13

Isoelectric Point (pI)

57.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51390 AT3G20970 AT3G20970
fragaria_vesca	FvH4_1g23510 FvH4_1g23510
malus_domestica	MD04G1028700.v1.1
prunus_persica	Prupe.2G079800_v2.0.a1
pyrus_communis	pycom04g02500
rosa_chinensis	RchiOBHm_Chr2g0118911
rosa_laevigata	RLG00000018435
rosa_multiflora	Rmu_sc0001653.1_g000031 Rmu_sc0003492.1_g000006
rosa_roxburghii	Rroxscaffold_2G00124590 Rroxscaffold_2G00144600
rosa_rugosa	Rorug02G0219500
rosa_samantha	Rh2AG276800 Rh2BG288500 Rh2DG283800 Rh2DG302900
rosa_wichuraiana	Rw2G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	133
AatII	GACGTC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	133
AccB7I	CCANNNNNTGG	1 cut(s)	662
AclWI	GGATC	3 cut(s)	406, 450, 647
AcoI	YGGCCR	2 cut(s)	333, 351
AcsI	RAATTY	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	134
AfaI	GTAC	1 cut(s)	762
AfiI	CCNNNNNNNGG	1 cut(s)	662
AgsI	TTSAA	4 cut(s)	239, 451, 548, 740
AjnI	CCWGG	2 cut(s)	280, 348
AluBI	AGCT	2 cut(s)	59, 711
AluI	AGCT	2 cut(s)	59, 711
Alw26I	GTCTC	1 cut(s)	587
AlwI	GGATC	3 cut(s)	406, 450, 647
AlwNI	CAGNNNCTG	2 cut(s)	662, 702
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	2 cut(s)	333, 351
ApeKI	GCWGC	3 cut(s)	467, 702, 812
ApoI	RAATTY	1 cut(s)	340
Asp700I	GAANNNNTTC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	99
AsuHPI	GGTGA	4 cut(s)	114, 140, 336, 712
AvaI	CYCGRG	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	99
AxyI	CCTNAGG	1 cut(s)	765
BalI	TGGCCA	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	479, 689, 824
BccI	CCATC	4 cut(s)	368, 526, 617, 823
BciT130I	CCWGG	2 cut(s)	282, 350
BclI	TGATCA	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	587
BfuAI	ACCTGC	1 cut(s)	133
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	3 cut(s)	468, 703, 813
BlsI	GCNGC	3 cut(s)	469, 704, 814
Bme1390I	CCNGG	2 cut(s)	282, 350
Bme18I	GGWCC	1 cut(s)	99
BmeT110I	CYCGRG	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	282, 350
BmsI	GCATC	6 cut(s)	41, 272, 421, 533, 609, 784
BpiI	GAAGAC	1 cut(s)	162
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	281, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	662
Bse1I	ACTGG	1 cut(s)	667
Bse21I	CCTNAGG	1 cut(s)	765
Bse3DI	GCAATG	2 cut(s)	567, 579
BseBI	CCWGG	2 cut(s)	282, 350
BseDI	CCNNGG	2 cut(s)	281, 348
BseGI	GGATG	2 cut(s)	56, 600
BseLI	CCNNNNNNNGG	1 cut(s)	662
BseMI	GCAATG	2 cut(s)	567, 579
BseMII	CTCAG	1 cut(s)	756
BseNI	ACTGG	1 cut(s)	667
BseXI	GCAGC	3 cut(s)	479, 689, 824
BshFI	GGCC	2 cut(s)	335, 353
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	662
BsmAI	GTCTC	1 cut(s)	587
BsmI	GAATGC	2 cut(s)	328, 687
BsnI	GGCC	2 cut(s)	335, 353
BsoBI	CYCGRG	1 cut(s)	384
Bsp143I	GATC	4 cut(s)	398, 442, 576, 652
BspANI	GGCC	2 cut(s)	335, 353
BspCNI	CTCAG	1 cut(s)	757
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	3 cut(s)	406, 450, 647
BsrDI	GCAATG	2 cut(s)	567, 579
BsrI	ACTGG	1 cut(s)	667
BssECI	CCNNGG	2 cut(s)	281, 348
BssMI	GATC	4 cut(s)	398, 442, 576, 652
BssNI	GRCGYC	1 cut(s)	134
Bst2UI	CCWGG	2 cut(s)	282, 350
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	215
BstACI	GRCGYC	1 cut(s)	134
BstAPI	GCANNNNNTGC	1 cut(s)	702
BstC8I	GCNNGC	1 cut(s)	694
BstDEI	CTNAG	1 cut(s)	765
BstEII	GGTNACC	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	56, 600
BstKTI	GATC	4 cut(s)	401, 445, 579, 655
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	4 cut(s)	398, 442, 576, 652
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 702, 708
BstNI	CCWGG	2 cut(s)	282, 350
BstNSI	RCATGY	2 cut(s)	232, 696
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	2 cut(s)	280, 348
BstV1I	GCAGC	3 cut(s)	479, 689, 824
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
Bsu36I	CCTNAGG	1 cut(s)	765
BsuRI	GGCC	2 cut(s)	335, 353
BtgZI	GCGATG	1 cut(s)	545
BtsCI	GGATG	2 cut(s)	56, 600
BtsI	GCAGTG	4 cut(s)	313, 537, 618, 703
BtsIMutI	CAGTG	4 cut(s)	313, 537, 618, 703
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	694
CaiI	CAGNNNCTG	2 cut(s)	662, 702
Cfr13I	GGNCC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	761
CviAII	CATG	5 cut(s)	74, 229, 337, 475, 693
CviQI	GTAC	1 cut(s)	761
DdeI	CTNAG	1 cut(s)	765
DpnI	GATC	4 cut(s)	400, 444, 578, 654
DpnII	GATC	4 cut(s)	398, 442, 576, 652
EaeI	YGGCCR	2 cut(s)	333, 351
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	765
Eco88I	CYCGRG	1 cut(s)	384
Eco91I	GGTNACC	1 cut(s)	146
EcoO65I	GGTNACC	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	280, 348
EcoT22I	ATGCAT	1 cut(s)	756
FaeI	CATG	5 cut(s)	77, 232, 340, 478, 696
FatI	CATG	5 cut(s)	73, 228, 336, 474, 692
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	3 cut(s)	468, 703, 813
FokI	GGATG	2 cut(s)	63, 587
Fsp4HI	GCNGC	3 cut(s)	468, 703, 813
GluI	GCNGC	3 cut(s)	468, 703, 813
HaeIII	GGCC	2 cut(s)	335, 353
HapII	CCGG	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	5 cut(s)	77, 232, 340, 478, 696
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	6 cut(s)	84, 176, 512, 557, 595, 823
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	4 cut(s)	114, 140, 336, 712
Hpy188I	TCNGA	9 cut(s)	43, 83, 175, 321, 403, 427, 562, 605, 828
Hpy188III	TCNNGA	4 cut(s)	63, 509, 548, 656
Hpy99I	CGWCG	2 cut(s)	136, 139
HpyAV	CCTTC	1 cut(s)	800
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	8 cut(s)	263, 467, 524, 572, 616, 685, 696, 754
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 702, 708
HpyF3I	CTNAG	1 cut(s)	765
HpySE526I	ACGT	1 cut(s)	134
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	5 cut(s)	77, 232, 340, 478, 696
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	4 cut(s)	398, 442, 576, 652
LmnI	GCTCC	2 cut(s)	689, 809
Lsp1109I	GCAGC	3 cut(s)	479, 689, 824
LweI	GCATC	6 cut(s)	41, 272, 421, 533, 609, 784
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	6 cut(s)	9, 146, 409, 415, 498, 718
MalI	GATC	4 cut(s)	400, 444, 578, 654
MboI	GATC	4 cut(s)	398, 442, 576, 652
MboII	GAAGA	6 cut(s)	27, 162, 232, 440, 480, 563
MflI	RGATCY	1 cut(s)	442
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	6 cut(s)	68, 340, 369, 378, 584, 674
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	3 cut(s)	506, 589, 832
MmeI	TCCRAC	3 cut(s)	4, 570, 628
MnlI	CCTC	2 cut(s)	41, 760
Mox20I	TGGCCA	1 cut(s)	353
Mph1103I	ATGCAT	1 cut(s)	756
MroXI	GAANNNNTTC	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	1 cut(s)	672
MslI	CAYNNNNRTG	2 cut(s)	191, 572
Msp20I	TGGCCA	1 cut(s)	353
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	2 cut(s)	282, 350
Mva1269I	GAATGC	2 cut(s)	328, 687
MvaI	CCWGG	2 cut(s)	282, 350
MwoI	GCNNNNNNNGC	3 cut(s)	332, 702, 708
NdeII	GATC	4 cut(s)	398, 442, 576, 652
NlaIII	CATG	5 cut(s)	77, 232, 340, 478, 696
NmuCI	GTSAC	3 cut(s)	146, 498, 718
NsiI	ATGCAT	1 cut(s)	756
NspI	RCATGY	2 cut(s)	232, 696
PaeI	GCATGC	1 cut(s)	696
PaeR7I	CTCGAG	1 cut(s)	384
PaqCI	CACCTGC	1 cut(s)	133
PctI	GAATGC	2 cut(s)	328, 687
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	3 cut(s)	84, 176, 557
PflFI	GACNNNGTC	1 cut(s)	30
PflMI	CCANNNNNTGG	1 cut(s)	662
PkrI	GCNGC	3 cut(s)	469, 704, 814
PleI	GAGTC	3 cut(s)	506, 589, 831
PpsI	GAGTC	3 cut(s)	506, 589, 831
Psp6I	CCWGG	2 cut(s)	280, 348
PspEI	GGTNACC	1 cut(s)	146
PspGI	CCWGG	2 cut(s)	280, 348
PspPI	GGNCC	1 cut(s)	99
PspXI	VCTCGAGB	1 cut(s)	384
PstNI	CAGNNNCTG	2 cut(s)	662, 702
PsuI	RGATCY	1 cut(s)	442
PsyI	GACNNNGTC	1 cut(s)	30
RsaI	GTAC	1 cut(s)	762
RsaNI	GTAC	1 cut(s)	761
RseI	CAYNNNNRTG	2 cut(s)	191, 572
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	3 cut(s)	468, 703, 813
Sau3AI	GATC	4 cut(s)	398, 442, 576, 652
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	3 cut(s)	506, 589, 832
ScrFI	CCNGG	2 cut(s)	282, 350
SetI	ASST	7 cut(s)	61, 104, 127, 137, 713, 766, 771
SfaNI	GCATC	6 cut(s)	41, 272, 421, 533, 609, 784
Sfr274I	CTCGAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	99
SlaI	CTCGAG	1 cut(s)	384
SmiMI	CAYNNNNRTG	2 cut(s)	191, 572
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
SphI	GCATGC	1 cut(s)	696
Sse9I	AATT	6 cut(s)	68, 340, 369, 378, 584, 674
StyD4I	CCNGG	2 cut(s)	280, 348
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	1 cut(s)	137
TaqI	TCGA	1 cut(s)	385
TasI	AATT	6 cut(s)	68, 340, 369, 378, 584, 674
TfiI	GAWTC	3 cut(s)	84, 176, 557
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	4 cut(s)	313, 544, 618, 703
TseFI	GTSAC	3 cut(s)	146, 498, 718
TseI	GCWGC	3 cut(s)	467, 702, 812
Tsp45I	GTSAC	3 cut(s)	146, 498, 718
TspDTI	ATGAA	6 cut(s)	27, 62, 76, 209, 353, 819
TspRI	CASTG	4 cut(s)	313, 544, 618, 703
Tth111I	GACNNNGTC	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	99
XapI	RAATTY	1 cut(s)	340
XceI	RCATGY	2 cut(s)	232, 696
XhoI	CTCGAG	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	34
ZraI	GACGTC	1 cut(s)	135
Zsp2I	ATGCAT	1 cut(s)	756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.