Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011072

Physical Location & Seq

Genomic Coordinates Reverse (-)

31183046 .. 31188780

Gene Structure 5735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49166

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAGGGGTTTGGCAAGATTGATCGGACGCAGTCTTTCATCTCACAAAAGATTCCAACCTACTACCTTCCGCTGCTTCTCTCGCCGGACCTATTTCCTCTCTGCTTATTTGGGTCGCCGTATCTCCCCCTCTTCTTCTTCTTCTTCTTCTTCTCCTTTCGCTTCTACAAAATGGGGCCTTCTTTCAGGGCAGAGGAGAAGCATGTTCATACAAACACAGTCCACACCCAATCCTGCATCTCTTATGTTTTACCCCGGGAAGCCTGTTATGGAAGTTGGCAGTGCAGACTTCCCGAATGCCCGGTCCGCCATGAATTCCCCACTGGCCAAGGCCCTTTATGGAATTGATGGTGTCACTCGAGTGTTTTTTGGATCAGATTTTGTTACTGTAACTAAGTCAGAAGATACTTCATGGGATCTTTTGAAGCCAGAAATCTTTGCAGCAATCATGGACTTTTACTCTTCTGGGGAGCCACTCTTTCTCGACTCAAAAGCTGCGGCAGCAAAGGACACTGCTATTAATGAGGATGATTCAGAAATAGTTGCCATGATCAAAGAATTGTTGGAGACTCGCATCAGACCAGCAGTTCAAGATGATGGCGGGGACATTGAGTATAAGGGATTTGATCCAGAAACCGGAATAGTTAAACTGAGCATGCAAGGAGCGTGTAGTGGCTGCCCAAGCTCATCAGTCACCCTGAAATCTGGCATTGAAAATATGCTCATGCATTATGTACCTGAGGTCAAAGGTGTGGAGCAAGAACATGATGAAGAAGATGAAGATGCAGCATTAACGGGGCATGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005198 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nfu_N NifU

Protein Analysis

269

Amino Acids

29.44

Weight (kDa)

5.26

Isoelectric Point (pI)

60.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nfu_N	PF08712	70 - 156	5e-31	Scaffold protein Nfu/NifU N terminal
NifU	PF01106	184 - 252	1.2e-28	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51390 AT3G20970 AT3G20970
fragaria_vesca	FvH4_1g23510 FvH4_1g23510
malus_domestica	MD04G1028700.v1.1
prunus_persica	Prupe.2G079800_v2.0.a1
pyrus_communis	pycom04g02500
rosa_chinensis	RchiOBHm_Chr2g0118911
rosa_laevigata	RLG00000018435
rosa_multiflora	Rmu_sc0001653.1_g000031 Rmu_sc0003492.1_g000006
rosa_roxburghii	Rroxscaffold_2G00124590 Rroxscaffold_2G00144600
rosa_rugosa	Rorug02G0219500
rosa_samantha	Rh2AG276800 Rh2BG288500 Rh2DG283800 Rh2DG302900
rosa_wichuraiana	Rw2G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	70, 306, 497, 600
AclWI	GGATC	3 cut(s)	379, 423, 620
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	313
AfaI	GTAC	1 cut(s)	735
AfiI	CCNNNNNNNGG	1 cut(s)	635
AgsI	TTSAA	3 cut(s)	424, 590, 713
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	2 cut(s)	494, 684
AluI	AGCT	2 cut(s)	494, 684
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	3 cut(s)	379, 423, 620
Ama87I	CYCGRG	2 cut(s)	254, 357
AoxI	GGCC	3 cut(s)	175, 324, 330
ApeKI	GCWGC	6 cut(s)	72, 440, 494, 500, 675, 785
ApoI	RAATTY	1 cut(s)	313
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AseI	ATTAAT	1 cut(s)	519
AspS9I	GGNCC	4 cut(s)	87, 175, 303, 331
AsuC2I	CCSGG	3 cut(s)	255, 256, 301
AsuHPI	GGTGA	1 cut(s)	685
AvaI	CYCGRG	2 cut(s)	254, 357
AvaII	GGWCC	2 cut(s)	87, 303
AxyI	CCTNAGG	1 cut(s)	738
BalI	TGGCCA	1 cut(s)	326
BbvI	GCAGC	6 cut(s)	59, 452, 481, 512, 662, 797
BccI	CCATC	2 cut(s)	341, 590
BceAI	ACGGC	1 cut(s)	102
BclI	TGATCA	1 cut(s)	549
BcnI	CCSGG	3 cut(s)	255, 256, 301
BcoDI	GTCTC	1 cut(s)	560
BisI	GCNGC	7 cut(s)	73, 441, 495, 498, 501, 676, 786
BlsI	GCNGC	7 cut(s)	74, 442, 496, 499, 502, 677, 787
Bme1390I	CCNGG	3 cut(s)	255, 256, 301
Bme18I	GGWCC	2 cut(s)	87, 303
BmeT110I	CYCGRG	2 cut(s)	254, 357
BmgT120I	GGNCC	4 cut(s)	87, 175, 303, 331
BmiI	GGNNCC	2 cut(s)	176, 471
BmrFI	CCNGG	3 cut(s)	255, 256, 301
BmsI	GCATC	3 cut(s)	245, 582, 772
BpuMI	CCSGG	3 cut(s)	255, 256, 301
BsaJI	CCNNGG	3 cut(s)	253, 254, 327
BsaWI	WCCGGW	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse1I	ACTGG	1 cut(s)	327
Bse21I	CCTNAGG	1 cut(s)	738
BseDI	CCNNGG	3 cut(s)	253, 254, 327
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMII	CTCAG	2 cut(s)	641, 729
BseNI	ACTGG	1 cut(s)	327
BseRI	GAGGAG	1 cut(s)	208
BseXI	GCAGC	6 cut(s)	59, 452, 481, 512, 662, 797
BsgI	GTGCAG	1 cut(s)	303
BshFI	GGCC	3 cut(s)	177, 326, 332
BsiHKCI	CYCGRG	2 cut(s)	254, 357
BsiSI	CCGG	4 cut(s)	85, 255, 301, 636
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	1 cut(s)	560
BsmFI	GGGAC	1 cut(s)	617
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	3 cut(s)	177, 326, 332
BsoBI	CYCGRG	2 cut(s)	254, 357
Bsp143I	GATC	5 cut(s)	21, 371, 415, 549, 625
BspACI	CCGC	4 cut(s)	70, 306, 497, 600
BspANI	GGCC	3 cut(s)	177, 326, 332
BspCNI	CTCAG	2 cut(s)	642, 730
BspLI	GGNNCC	2 cut(s)	176, 471
BspPI	GGATC	3 cut(s)	379, 423, 620
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	3 cut(s)	253, 254, 327
BssMI	GATC	5 cut(s)	21, 371, 415, 549, 625
BssT1I	CCWWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	219, 388
Bst6I	CTCTTC	2 cut(s)	136, 466
BstC8I	GCNNGC	1 cut(s)	656
BstDEI	CTNAG	3 cut(s)	393, 650, 738
BstF5I	GGATG	1 cut(s)	532
BstKTI	GATC	5 cut(s)	24, 374, 418, 552, 628
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	5 cut(s)	21, 371, 415, 549, 625
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 305, 500, 681
BstNSI	RCATGY	3 cut(s)	205, 658, 803
BstSCI	CCNGG	3 cut(s)	253, 254, 299
BstV1I	GCAGC	6 cut(s)	59, 452, 481, 512, 662, 797
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
Bsu36I	CCTNAGG	1 cut(s)	738
BsuRI	GGCC	3 cut(s)	177, 326, 332
BtsCI	GGATG	1 cut(s)	532
BtsI	GCAGTG	2 cut(s)	286, 510
BtsIMutI	CAGTG	3 cut(s)	286, 320, 510
Cac8I	GCNNGC	1 cut(s)	656
Cfr13I	GGNCC	4 cut(s)	87, 175, 303, 331
Cfr9I	CCCGGG	1 cut(s)	254
CpoI	CGGWCCG	1 cut(s)	303
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	734
CspI	CGGWCCG	1 cut(s)	303
CviAII	CATG	9 cut(s)	202, 310, 411, 448, 547, 655, 724, 764, 800
CviJI	RGCY	9 cut(s)	177, 262, 326, 332, 427, 472, 494, 675, 684
CviKI_1	RGCY	9 cut(s)	177, 262, 326, 332, 427, 472, 494, 675, 684
CviQI	GTAC	1 cut(s)	734
DdeI	CTNAG	3 cut(s)	393, 650, 738
DpnI	GATC	5 cut(s)	23, 373, 417, 551, 627
DpnII	GATC	5 cut(s)	21, 371, 415, 549, 625
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	136, 466
EarI	CTCTTC	2 cut(s)	136, 466
EciI	GGCGGA	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	87, 303
Eco81I	CCTNAGG	1 cut(s)	738
Eco88I	CYCGRG	2 cut(s)	254, 357
EcoO109I	RGGNCCY	2 cut(s)	175, 331
EcoRI	GAATTC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	327
EcoT22I	ATGCAT	1 cut(s)	729
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	9 cut(s)	205, 313, 414, 451, 550, 658, 727, 767, 803
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	9 cut(s)	201, 309, 410, 447, 546, 654, 723, 763, 799
FauI	CCCGC	1 cut(s)	593
FbaI	TGATCA	1 cut(s)	549
Fnu4HI	GCNGC	7 cut(s)	73, 441, 495, 498, 501, 676, 786
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	7 cut(s)	73, 441, 495, 498, 501, 676, 786
GluI	GCNGC	7 cut(s)	73, 441, 495, 498, 501, 676, 786
HaeIII	GGCC	3 cut(s)	177, 326, 332
HapII	CCGG	4 cut(s)	85, 255, 301, 636
HgaI	GACGC	1 cut(s)	36
Hin1II	CATG	9 cut(s)	205, 313, 414, 451, 550, 658, 727, 767, 803
HinfI	GANTC	4 cut(s)	51, 485, 530, 568
HpaII	CCGG	4 cut(s)	85, 255, 301, 636
HphI	GGTGA	1 cut(s)	685
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	5 cut(s)	26, 376, 400, 535, 578
Hpy188III	TCNNGA	4 cut(s)	292, 482, 590, 629
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	2 cut(s)	76, 188
HpyCH4III	ACNGT	2 cut(s)	219, 388
HpyCH4V	TGCA	6 cut(s)	236, 284, 440, 658, 727, 785
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 305, 500, 681
HpyF3I	CTNAG	3 cut(s)	393, 650, 738
Hsp92II	CATG	9 cut(s)	205, 313, 414, 451, 550, 658, 727, 767, 803
Ksp22I	TGATCA	1 cut(s)	549
Kzo9I	GATC	5 cut(s)	21, 371, 415, 549, 625
LmnI	GCTCC	3 cut(s)	469, 662, 754
Lsp1109I	GCAGC	6 cut(s)	59, 452, 481, 512, 662, 797
LweI	GCATC	3 cut(s)	245, 582, 772
MaeIII	GTNAC	4 cut(s)	352, 382, 388, 691
MalI	GATC	5 cut(s)	23, 373, 417, 551, 627
MboI	GATC	5 cut(s)	21, 371, 415, 549, 625
MflI	RGATCY	1 cut(s)	415
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	3 cut(s)	313, 342, 557
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	2 cut(s)	479, 562
MmeI	TCCRAC	2 cut(s)	79, 543
MnlI	CCTC	5 cut(s)	107, 139, 186, 517, 733
Mox20I	TGGCCA	1 cut(s)	326
Mph1103I	ATGCAT	1 cut(s)	729
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	3 cut(s)	519, 645, 791
MslI	CAYNNNNRTG	1 cut(s)	359
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	72
MspI	CCGG	4 cut(s)	85, 255, 301, 636
MspR9I	CCNGG	3 cut(s)	255, 256, 301
Mva1269I	GAATGC	1 cut(s)	301
MwoI	GCNNNNNNNGC	4 cut(s)	81, 305, 500, 681
NciI	CCSGG	3 cut(s)	255, 256, 301
NdeII	GATC	5 cut(s)	21, 371, 415, 549, 625
NlaIII	CATG	9 cut(s)	205, 313, 414, 451, 550, 658, 727, 767, 803
NlaIV	GGNNCC	2 cut(s)	176, 471
NmuCI	GTSAC	2 cut(s)	352, 691
NsiI	ATGCAT	1 cut(s)	729
NspI	RCATGY	3 cut(s)	205, 658, 803
OliI	CACNNNNGTG	1 cut(s)	359
PaeI	GCATGC	1 cut(s)	658
PaeR7I	CTCGAG	1 cut(s)	357
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	51, 530
PflFI	GACNNNGTC	1 cut(s)	30
PkrI	GCNGC	7 cut(s)	74, 442, 496, 499, 502, 677, 787
PleI	GAGTC	2 cut(s)	479, 562
PpsI	GAGTC	2 cut(s)	479, 562
PshBI	ATTAAT	1 cut(s)	519
PspN4I	GGNNCC	2 cut(s)	176, 471
PspPI	GGNCC	4 cut(s)	87, 175, 303, 331
PspXI	VCTCGAGB	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	415
PsyI	GACNNNGTC	1 cut(s)	30
RsaI	GTAC	1 cut(s)	735
RsaNI	GTAC	1 cut(s)	734
RseI	CAYNNNNRTG	1 cut(s)	359
Rsr2I	CGGWCCG	1 cut(s)	303
RsrII	CGGWCCG	1 cut(s)	303
SaqAI	TTAA	3 cut(s)	519, 645, 791
SatI	GCNGC	7 cut(s)	73, 441, 495, 498, 501, 676, 786
Sau3AI	GATC	5 cut(s)	21, 371, 415, 549, 625
Sau96I	GGNCC	4 cut(s)	87, 175, 303, 331
SchI	GAGTC	2 cut(s)	479, 562
ScrFI	CCNGG	3 cut(s)	255, 256, 301
SetI	ASST	8 cut(s)	61, 68, 92, 496, 686, 739, 744, 751
SfaNI	GCATC	3 cut(s)	245, 582, 772
Sfr274I	CTCGAG	1 cut(s)	357
SinI	GGWCC	2 cut(s)	87, 303
SlaI	CTCGAG	1 cut(s)	357
SmaI	CCCGGG	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
SphI	GCATGC	1 cut(s)	658
Sse9I	AATT	3 cut(s)	313, 342, 557
SsiI	CCGC	4 cut(s)	70, 306, 497, 600
StyD4I	CCNGG	3 cut(s)	253, 254, 299
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	219, 388
TaqI	TCGA	2 cut(s)	358, 483
TasI	AATT	3 cut(s)	313, 342, 557
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	2 cut(s)	51, 530
Tru1I	TTAA	3 cut(s)	519, 645, 791
Tru9I	TTAA	3 cut(s)	519, 645, 791
TscAI	CASTG	3 cut(s)	286, 327, 517
TseFI	GTSAC	2 cut(s)	352, 691
TseI	GCWGC	6 cut(s)	72, 440, 494, 500, 675, 785
Tsp45I	GTSAC	2 cut(s)	352, 691
TspDTI	ATGAA	6 cut(s)	27, 196, 326, 399, 783, 792
TspMI	CCCGGG	1 cut(s)	254
TspRI	CASTG	3 cut(s)	286, 327, 517
Tth111I	GACNNNGTC	1 cut(s)	30
VpaK11BI	GGWCC	2 cut(s)	87, 303
VspI	ATTAAT	1 cut(s)	519
XapI	RAATTY	1 cut(s)	313
XceI	RCATGY	3 cut(s)	205, 658, 803
XhoI	CTCGAG	1 cut(s)	357
XmaI	CCCGGG	1 cut(s)	254
Zsp2I	ATGCAT	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.