Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011072

Physical Location & Seq

Genomic Coordinates Forward (+)

58945371 .. 58950450

Gene Structure 5080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAGGGGTTTGGCAAGATTGATCGGACGCAGTCTTTCATCTCACAAAAGATTCCAACCTTCTGGACCATCCACTACCTTCCGCTGCATCTCTCGCCGGACCTATTTCCTCTCTGCTTATTTGGGTCGCCGTATCTCCCCCTCTTCTTCTTCTTCTTCTGCCTCATCTCCTTTCGCTTCTACAAAATGGGGCCTTCTTTCAGGGCAGAGGAGAAGCATGTTTATACAAACACAGTCCACACCCAATCCTGCATCTCTTATGTTTTACCCCGGGAAGCCTGTTATGGAAGTCGGCAGTGCAGACTTTCCGAATGCCCGGTCCGCCATGAATTCCCCACTGGCCAAAGCTCTTTATGGAATTGATGATGGAAAAGACATGTCTTTTGAGAATGCGGATGTCCCAATTGGAGTTCTGAAGCACTATACTGTCTGCACCCTGCCTAGGTTTGAGTGTCACTCGAGTGTTTTTGGATCAGATTTTGTTACTGTAACCAAGTCAGAAGATACTTCATGGGATCTTTTGAAGCCCGAAATCTTTGCAGCAATCATGGACTTTTACTCTTCTGGGGAGCCACTCTTTCTCGACTCAAAAGCTGCAGCAGCAAAGGACACAGCTATTAATGAGGATGATTCAGAAATAGTTGCCATGATCAAAGAATTGTTGGAGACTCGCATCAGACCAGCTGTTCAAGATGATGGTGGGGACATTGAGTATAAGGGATTTGATCCAGAAACCGGAATAGTTAAGCTGAGCATGCAAGGAGCATGTAGTGGCTGCCCAAGCTCATCAGTCACCCTGAAATCTGGCATTGAAAATATGCTCATGCATTATGTACCTGAGGTCAAAGGTGTGGAGCAAGAACATGATGAAGAAGACGAAGATGCAGCATTAATGGGGCATGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005198 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nfu_N NifU

Protein Analysis

302

Amino Acids

32.96

Weight (kDa)

5.18

Isoelectric Point (pI)

63.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nfu_N	PF08712	75 - 122	6.1e-11	Scaffold protein Nfu/NifU N terminal
Nfu_N	PF08712	155 - 189	8.9e-09	Scaffold protein Nfu/NifU N terminal
NifU	PF01106	217 - 285	1.5e-28	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51390 AT3G20970 AT3G20970
fragaria_vesca	FvH4_1g23510 FvH4_1g23510
malus_domestica	MD04G1028700.v1.1
prunus_persica	Prupe.2G079800_v2.0.a1
pyrus_communis	pycom04g02500
rosa_chinensis	RchiOBHm_Chr2g0118911
rosa_laevigata	RLG00000018435
rosa_multiflora	Rmu_sc0001653.1_g000031 Rmu_sc0003492.1_g000006
rosa_roxburghii	Rroxscaffold_2G00124590 Rroxscaffold_2G00144600
rosa_rugosa	Rorug02G0219500
rosa_samantha	Rh2AG276800 Rh2BG288500 Rh2DG283800 Rh2DG302900
rosa_wichuraiana	Rw2G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	82, 321, 392
AclWI	GGATC	3 cut(s)	478, 522, 719
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	434
AfaI	GTAC	1 cut(s)	834
AfiI	CCNNNNNNNGG	2 cut(s)	441, 734
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	3 cut(s)	523, 689, 812
AleI	CACNNNNGTG	1 cut(s)	459
AluBI	AGCT	6 cut(s)	347, 593, 614, 683, 748, 783
AluI	AGCT	6 cut(s)	347, 593, 614, 683, 748, 783
Alw26I	GTCTC	1 cut(s)	659
AlwI	GGATC	3 cut(s)	478, 522, 719
Ama87I	CYCGRG	2 cut(s)	269, 457
AoxI	GGCC	2 cut(s)	190, 339
ApeKI	GCWGC	7 cut(s)	84, 539, 593, 596, 599, 774, 884
ApoI	RAATTY	1 cut(s)	328
ArsI	GACNNNNNNTTYG	4 cut(s)	302, 334, 365, 397
AseI	ATTAAT	2 cut(s)	618, 890
AspA2I	CCTAGG	1 cut(s)	440
AspS9I	GGNCC	4 cut(s)	65, 99, 190, 318
AsuC2I	CCSGG	3 cut(s)	270, 271, 316
AsuHPI	GGTGA	1 cut(s)	784
AvaI	CYCGRG	2 cut(s)	269, 457
AvaII	GGWCC	3 cut(s)	65, 99, 318
AvrII	CCTAGG	1 cut(s)	440
AxyI	CCTNAGG	1 cut(s)	837
BalI	TGGCCA	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	879
BbvI	GCAGC	7 cut(s)	71, 551, 580, 608, 611, 761, 896
BccI	CCATC	3 cut(s)	76, 359, 689
BceAI	ACGGC	1 cut(s)	114
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BclI	TGATCA	1 cut(s)	648
BcnI	CCSGG	3 cut(s)	270, 271, 316
BcoDI	GTCTC	1 cut(s)	659
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	594
BisI	GCNGC	7 cut(s)	85, 540, 594, 597, 600, 775, 885
BlnI	CCTAGG	1 cut(s)	440
BlpI	GCTNAGC	1 cut(s)	749
BlsI	GCNGC	7 cut(s)	86, 541, 595, 598, 601, 776, 886
Bme1390I	CCNGG	3 cut(s)	270, 271, 316
Bme18I	GGWCC	3 cut(s)	65, 99, 318
BmeT110I	CYCGRG	2 cut(s)	269, 457
BmgT120I	GGNCC	4 cut(s)	65, 99, 190, 318
BmiI	GGNNCC	2 cut(s)	191, 570
BmrFI	CCNGG	3 cut(s)	270, 271, 316
BmsI	GCATC	4 cut(s)	96, 260, 681, 871
BpiI	GAAGAC	1 cut(s)	879
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
Bpu1102I	GCTNAGC	1 cut(s)	749
BpuMI	CCSGG	3 cut(s)	270, 271, 316
BsaJI	CCNNGG	3 cut(s)	268, 269, 440
BsaWI	WCCGGW	1 cut(s)	734
Bsc4I	CCNNNNNNNGG	2 cut(s)	441, 734
Bse1I	ACTGG	1 cut(s)	342
Bse21I	CCTNAGG	1 cut(s)	837
BseDI	CCNNGG	3 cut(s)	268, 269, 440
BseGI	GGATG	3 cut(s)	68, 400, 631
BseLI	CCNNNNNNNGG	2 cut(s)	441, 734
BseMII	CTCAG	2 cut(s)	740, 828
BseNI	ACTGG	1 cut(s)	342
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	7 cut(s)	71, 551, 580, 608, 611, 761, 896
BsgI	GTGCAG	2 cut(s)	318, 415
BshFI	GGCC	2 cut(s)	192, 341
BsiHKCI	CYCGRG	2 cut(s)	269, 457
BsiSI	CCGG	4 cut(s)	97, 270, 316, 735
BslFI	GGGAC	2 cut(s)	383, 716
BslI	CCNNNNNNNGG	2 cut(s)	441, 734
BsmAI	GTCTC	1 cut(s)	659
BsmFI	GGGAC	2 cut(s)	383, 716
BsmI	GAATGC	2 cut(s)	316, 394
BsnI	GGCC	2 cut(s)	192, 341
BsoBI	CYCGRG	2 cut(s)	269, 457
Bsp143I	GATC	5 cut(s)	21, 470, 514, 648, 724
Bsp1720I	GCTNAGC	1 cut(s)	749
BspACI	CCGC	3 cut(s)	82, 321, 392
BspANI	GGCC	2 cut(s)	192, 341
BspCNI	CTCAG	2 cut(s)	741, 829
BspLI	GGNNCC	2 cut(s)	191, 570
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	3 cut(s)	478, 522, 719
BsrI	ACTGG	1 cut(s)	342
BssECI	CCNNGG	3 cut(s)	268, 269, 440
BssMI	GATC	5 cut(s)	21, 470, 514, 648, 724
BssT1I	CCWWGG	1 cut(s)	440
Bst4CI	ACNGT	3 cut(s)	234, 427, 487
Bst6I	CTCTTC	2 cut(s)	148, 565
BstC8I	GCNNGC	1 cut(s)	755
BstDEI	CTNAG	2 cut(s)	749, 837
BstF5I	GGATG	3 cut(s)	68, 400, 631
BstKTI	GATC	5 cut(s)	24, 473, 517, 651, 727
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	5 cut(s)	21, 470, 514, 648, 724
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 320, 599, 754, 780
BstNSI	RCATGY	5 cut(s)	220, 379, 757, 768, 902
BstSCI	CCNGG	3 cut(s)	268, 269, 314
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	7 cut(s)	71, 551, 580, 608, 611, 761, 896
BstV2I	GAAGAC	1 cut(s)	879
BstX2I	RGATCY	1 cut(s)	514
BstXI	CCANNNNNNTGG	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	514
Bsu36I	CCTNAGG	1 cut(s)	837
BsuRI	GGCC	2 cut(s)	192, 341
BtsCI	GGATG	3 cut(s)	68, 400, 631
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	2 cut(s)	301, 335
Cac8I	GCNNGC	1 cut(s)	755
Cfr13I	GGNCC	4 cut(s)	65, 99, 190, 318
Cfr9I	CCCGGG	1 cut(s)	269
CpoI	CGGWCCG	1 cut(s)	318
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	833
CspI	CGGWCCG	1 cut(s)	318
CviQI	GTAC	1 cut(s)	833
DdeI	CTNAG	2 cut(s)	749, 837
DpnI	GATC	5 cut(s)	23, 472, 516, 650, 726
DpnII	GATC	5 cut(s)	21, 470, 514, 648, 724
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	2 cut(s)	148, 565
EarI	CTCTTC	2 cut(s)	148, 565
EciI	GGCGGA	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	440
Eco47I	GGWCC	3 cut(s)	65, 99, 318
Eco57I	CTGAAG	1 cut(s)	434
Eco81I	CCTNAGG	1 cut(s)	837
Eco88I	CYCGRG	2 cut(s)	269, 457
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	440
EcoT22I	ATGCAT	1 cut(s)	828
ErhI	CCWWGG	1 cut(s)	440
FaqI	GGGAC	2 cut(s)	383, 716
FbaI	TGATCA	1 cut(s)	648
Fnu4HI	GCNGC	7 cut(s)	85, 540, 594, 597, 600, 775, 885
FokI	GGATG	3 cut(s)	55, 407, 638
Fsp4HI	GCNGC	7 cut(s)	85, 540, 594, 597, 600, 775, 885
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	7 cut(s)	85, 540, 594, 597, 600, 775, 885
HaeIII	GGCC	2 cut(s)	192, 341
HapII	CCGG	4 cut(s)	97, 270, 316, 735
HgaI	GACGC	1 cut(s)	36
HinfI	GANTC	4 cut(s)	51, 584, 629, 667
HpaII	CCGG	4 cut(s)	97, 270, 316, 735
HphI	GGTGA	1 cut(s)	784
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	7 cut(s)	26, 309, 414, 475, 499, 634, 677
Hpy188III	TCNNGA	4 cut(s)	63, 581, 689, 728
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	3 cut(s)	69, 88, 203
HpyCH4III	ACNGT	3 cut(s)	234, 427, 487
HpyCH4V	TGCA	9 cut(s)	87, 251, 299, 432, 539, 596, 757, 826, 884
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 320, 599, 754, 780
HpyF3I	CTNAG	2 cut(s)	749, 837
Ksp22I	TGATCA	1 cut(s)	648
Kzo9I	GATC	5 cut(s)	21, 470, 514, 648, 724
LmnI	GCTCC	3 cut(s)	568, 761, 853
Lsp1109I	GCAGC	7 cut(s)	71, 551, 580, 608, 611, 761, 896
LweI	GCATC	4 cut(s)	96, 260, 681, 871
MaeI	CTAG	1 cut(s)	441
MaeIII	GTNAC	4 cut(s)	452, 481, 487, 790
MalI	GATC	5 cut(s)	23, 472, 516, 650, 726
MboI	GATC	5 cut(s)	21, 470, 514, 648, 724
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	1 cut(s)	514
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	4 cut(s)	328, 357, 402, 656
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	2 cut(s)	578, 661
MmeI	TCCRAC	2 cut(s)	79, 642
MnlI	CCTC	6 cut(s)	119, 151, 172, 201, 616, 832
Mox20I	TGGCCA	1 cut(s)	341
Mph1103I	ATGCAT	1 cut(s)	828
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	3 cut(s)	618, 744, 890
MslI	CAYNNNNRTG	1 cut(s)	459
Msp20I	TGGCCA	1 cut(s)	341
MspA1I	CMGCKG	2 cut(s)	84, 683
MspI	CCGG	4 cut(s)	97, 270, 316, 735
MspR9I	CCNGG	3 cut(s)	270, 271, 316
MunI	CAATTG	1 cut(s)	402
Mva1269I	GAATGC	2 cut(s)	316, 394
MwoI	GCNNNNNNNGC	5 cut(s)	93, 320, 599, 754, 780
NciI	CCSGG	3 cut(s)	270, 271, 316
NdeII	GATC	5 cut(s)	21, 470, 514, 648, 724
NlaIV	GGNNCC	2 cut(s)	191, 570
NmuCI	GTSAC	2 cut(s)	452, 790
NsiI	ATGCAT	1 cut(s)	828
NspI	RCATGY	5 cut(s)	220, 379, 757, 768, 902
OliI	CACNNNNGTG	1 cut(s)	459
PaeI	GCATGC	1 cut(s)	757
PaeR7I	CTCGAG	1 cut(s)	457
PciI	ACATGT	1 cut(s)	375
PctI	GAATGC	2 cut(s)	316, 394
PfeI	GAWTC	2 cut(s)	51, 629
PflFI	GACNNNGTC	1 cut(s)	30
PkrI	GCNGC	7 cut(s)	86, 541, 595, 598, 601, 776, 886
PleI	GAGTC	2 cut(s)	578, 661
PpsI	GAGTC	2 cut(s)	578, 661
PscI	ACATGT	1 cut(s)	375
PshBI	ATTAAT	2 cut(s)	618, 890
PspN4I	GGNNCC	2 cut(s)	191, 570
PspPI	GGNCC	4 cut(s)	65, 99, 190, 318
PspXI	VCTCGAGB	1 cut(s)	457
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	514
PsyI	GACNNNGTC	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	1 cut(s)	834
RsaNI	GTAC	1 cut(s)	833
RseI	CAYNNNNRTG	1 cut(s)	459
Rsr2I	CGGWCCG	1 cut(s)	318
RsrII	CGGWCCG	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	618, 744, 890
SatI	GCNGC	7 cut(s)	85, 540, 594, 597, 600, 775, 885
Sau3AI	GATC	5 cut(s)	21, 470, 514, 648, 724
Sau96I	GGNCC	4 cut(s)	65, 99, 190, 318
SchI	GAGTC	2 cut(s)	578, 661
ScrFI	CCNGG	3 cut(s)	270, 271, 316
SfaNI	GCATC	4 cut(s)	96, 260, 681, 871
SfcI	CTRYAG	1 cut(s)	594
Sfr274I	CTCGAG	1 cut(s)	457
SinI	GGWCC	3 cut(s)	65, 99, 318
SlaI	CTCGAG	1 cut(s)	457
SmaI	CCCGGG	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
SphI	GCATGC	1 cut(s)	757
Sse9I	AATT	4 cut(s)	328, 357, 402, 656
SsiI	CCGC	3 cut(s)	82, 321, 392
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	3 cut(s)	268, 269, 314
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	3 cut(s)	234, 427, 487
TaqI	TCGA	2 cut(s)	458, 582
TasI	AATT	4 cut(s)	328, 357, 402, 656
TfiI	GAWTC	2 cut(s)	51, 629
Tru1I	TTAA	3 cut(s)	618, 744, 890
Tru9I	TTAA	3 cut(s)	618, 744, 890
TscAI	CASTG	2 cut(s)	301, 342
TseFI	GTSAC	2 cut(s)	452, 790
TseI	GCWGC	7 cut(s)	84, 539, 593, 596, 599, 774, 884
Tsp45I	GTSAC	2 cut(s)	452, 790
TspDTI	ATGAA	4 cut(s)	27, 341, 498, 882
TspMI	CCCGGG	1 cut(s)	269
TspRI	CASTG	2 cut(s)	301, 342
Tth111I	GACNNNGTC	1 cut(s)	30
VpaK11BI	GGWCC	3 cut(s)	65, 99, 318
VspI	ATTAAT	2 cut(s)	618, 890
XapI	RAATTY	1 cut(s)	328
XceI	RCATGY	5 cut(s)	220, 379, 757, 768, 902
XhoI	CTCGAG	1 cut(s)	457
XmaI	CCCGGG	1 cut(s)	269
XmaJI	CCTAGG	1 cut(s)	440
XspI	CTAG	1 cut(s)	441
Zsp2I	ATGCAT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.