Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011072

Physical Location & Seq

Genomic Coordinates Reverse (-)

15345602 .. 15350159

Gene Structure 4558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23510.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTTGGTGAAAAATAGAGCTGAGAGGGGAAATGTAACTTGGGCACACAACCGCACAAAACGACCAACGTTCTCTTCTTTTCTTCCCTCTGTTCTCTCATCTCCCGATTTCCTTCTTCCCAAACACAAACCCGAACAAGAAAAGAAGCAGCAACTCCTTGGCTTGGTTGAGATGAGGGCTTTAGCAAGATTGATCGGACGAAGTCTCTCATCTCAGAAAAGATTCCACCTTTCTGAGCAACCCAACACCTTCCGGTACCTCTCTCGCCGAACCTATTTCCCATCCACGACGTCGTTTTCGGGTCGCCCTATCTCCCCCTCTTCGTCTCCTTTCGCTTCTACCAAATGGGGCCTTCTCTCAGGGCAGAAGAGAAGCATGTTTATACAAACACAGTCGACACCCAATCCTGCATCGCTTATGTTTTACCCTGATAAGCCTGTTATGGAAGTTGGCAGTGCTGACTTTCCGAATCCTCGGTCCGCTATGAACTCCCCACTGGCCAAAGCCCTTTATGGAATTGATGGTGTCACTCGAGTGTTTTTTGGATCAGATTTTGTCACTGTAACTAAATCAGAAGATACTTCATGGGATATTTTGAAGCCAGAAATCTTTGCAGCAATCATGGACTTTTATTCTTCTGGGGAGCCACTCTTTCTCGACTCAAAAGCTGGGGCAGCAAAGGACACAGCTATTCATGAGGATGATTCAGAAGTCGTTGCCATGATCAAAGAATTATTGGAGACTCGCATTAGACCAGCAGTGCAAGATGATGGTGGAGATATTGAGTATAGGGGATTTGATCCAGAGACTGGAATAGTTAAACTGAGCATGCAAGGAGCGTGTAGTGGTTGCCCAAGCTCATCAGTCACCCTGAAATCTGGCATTGAGAACATGCTCATGCATTATGTACCTGAGGTCAAAGGTGTGGAGCAAGAACATGATGAAGAAGAAGATGCAGCACTAACAGGACATGTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005198 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nfu_N NifU

Protein Analysis

327

Amino Acids

36.15

Weight (kDa)

6.03

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nfu_N	PF08712	128 - 214	8.6e-31	Scaffold protein Nfu/NifU N terminal
NifU	PF01106	242 - 307	2.8e-27	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51390 AT3G20970 AT3G20970
fragaria_vesca	FvH4_1g23510 FvH4_1g23510
malus_domestica	MD04G1028700.v1.1
prunus_persica	Prupe.2G079800_v2.0.a1
pyrus_communis	pycom04g02500
rosa_chinensis	RchiOBHm_Chr2g0118911
rosa_laevigata	RLG00000018435
rosa_multiflora	Rmu_sc0001653.1_g000031 Rmu_sc0003492.1_g000006
rosa_roxburghii	Rroxscaffold_2G00124590 Rroxscaffold_2G00144600
rosa_rugosa	Rorug02G0219500
rosa_samantha	Rh2AG276800 Rh2BG288500 Rh2DG283800 Rh2DG302900
rosa_wichuraiana	Rw2G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	293
Acc65I	GGTACC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	255
AccB7I	CCANNNNNTGG	1 cut(s)	809
AccI	GTMKAC	1 cut(s)	395
AciI	CCGC	2 cut(s)	52, 480
AclI	AACGTT	1 cut(s)	68
AclWI	GGATC	2 cut(s)	553, 794
AcoI	YGGCCR	1 cut(s)	498
AcyI	GRCGYC	1 cut(s)	290
AfaI	GTAC	2 cut(s)	257, 909
AfiI	CCNNNNNNNGG	2 cut(s)	163, 809
AflIII	ACRYGT	1 cut(s)	970
AgsI	TTSAA	1 cut(s)	598
AjuI	GAANNNNNNNTTGG	4 cut(s)	22, 54, 58, 90
AleI	CACNNNNGTG	1 cut(s)	533
AluBI	AGCT	4 cut(s)	20, 668, 689, 858
AluI	AGCT	4 cut(s)	20, 668, 689, 858
Alw26I	GTCTC	4 cut(s)	209, 330, 734, 800
AlwI	GGATC	2 cut(s)	553, 794
AlwNI	CAGNNNCTG	1 cut(s)	809
Ama87I	CYCGRG	1 cut(s)	531
AoxI	GGCC	2 cut(s)	349, 498
ApeKI	GCWGC	4 cut(s)	148, 614, 674, 956
ArsI	GACNNNNNNTTYG	4 cut(s)	280, 312, 461, 493
Asp700I	GAANNNNTTC	1 cut(s)	221
Asp718I	GGTACC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	349, 477
AsuHPI	GGTGA	2 cut(s)	19, 859
AvaI	CYCGRG	1 cut(s)	531
AvaII	GGWCC	1 cut(s)	477
AxyI	CCTNAGG	1 cut(s)	912
BaeGI	GKGCMC	1 cut(s)	46
BalI	TGGCCA	1 cut(s)	500
BanI	GGYRCC	1 cut(s)	255
BbvI	GCAGC	4 cut(s)	160, 626, 686, 968
BccI	CCATC	3 cut(s)	289, 515, 764
BclI	TGATCA	1 cut(s)	723
BcoDI	GTCTC	4 cut(s)	209, 330, 734, 800
BisI	GCNGC	4 cut(s)	149, 615, 675, 957
BlsI	GCNGC	4 cut(s)	150, 616, 676, 958
Bme18I	GGWCC	1 cut(s)	477
BmeT110I	CYCGRG	1 cut(s)	531
BmgT120I	GGNCC	2 cut(s)	349, 477
BmiI	GGNNCC	3 cut(s)	257, 350, 645
BmsI	GCATC	2 cut(s)	419, 943
BsaHI	GRCGYC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	157, 473
BsaWI	WCCGGW	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 809
Bse1I	ACTGG	2 cut(s)	501, 814
Bse21I	CCTNAGG	1 cut(s)	912
BseDI	CCNNGG	2 cut(s)	157, 473
BseGI	GGATG	2 cut(s)	281, 706
BseLI	CCNNNNNNNGG	2 cut(s)	163, 809
BseMII	CTCAG	6 cut(s)	12, 225, 227, 372, 815, 903
BseNI	ACTGG	2 cut(s)	501, 814
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	4 cut(s)	160, 626, 686, 968
BseYI	CCCAGC	1 cut(s)	668
BshFI	GGCC	2 cut(s)	351, 500
BshNI	GGYRCC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	531
BsiSI	CCGG	1 cut(s)	253
BslI	CCNNNNNNNGG	2 cut(s)	163, 809
BsmAI	GTCTC	4 cut(s)	209, 330, 734, 800
BsmBI	CGTCTC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	351, 500
BsoBI	CYCGRG	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	4 cut(s)	192, 545, 723, 799
BspACI	CCGC	2 cut(s)	52, 480
BspANI	GGCC	2 cut(s)	351, 500
BspCNI	CTCAG	6 cut(s)	13, 226, 226, 371, 816, 904
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	3 cut(s)	257, 350, 645
BspPI	GGATC	2 cut(s)	553, 794
BspT107I	GGYRCC	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	501, 814
BssECI	CCNNGG	2 cut(s)	157, 473
BssMI	GATC	4 cut(s)	192, 545, 723, 799
BssNI	GRCGYC	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	157
Bst4CI	ACNGT	2 cut(s)	393, 562
Bst6I	CTCTTC	3 cut(s)	79, 325, 362
BstACI	GRCGYC	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	830
BstDEI	CTNAG	6 cut(s)	21, 213, 234, 358, 824, 912
BstF5I	GGATG	2 cut(s)	281, 706
BstKTI	GATC	4 cut(s)	195, 548, 726, 802
BstMAI	GTCTC	4 cut(s)	209, 330, 734, 800
BstMBI	GATC	4 cut(s)	192, 545, 723, 799
BstMWI	GCNNNNNNNGC	1 cut(s)	674
BstNSI	RCATGY	4 cut(s)	379, 832, 895, 974
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	4 cut(s)	160, 626, 686, 968
Bsu36I	CCTNAGG	1 cut(s)	912
BsuRI	GGCC	2 cut(s)	351, 500
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	281, 706
BtsI	GCAGTG	2 cut(s)	460, 765
BtsIMutI	CAGTG	4 cut(s)	460, 494, 558, 765
Cac8I	GCNNGC	1 cut(s)	830
CaiI	CAGNNNCTG	1 cut(s)	809
CciI	TCATGA	1 cut(s)	694
Cfr13I	GGNCC	2 cut(s)	349, 477
CpoI	CGGWCCG	1 cut(s)	477
Csp6I	GTAC	2 cut(s)	256, 908
CspI	CGGWCCG	1 cut(s)	477
CviQI	GTAC	2 cut(s)	256, 908
DdeI	CTNAG	6 cut(s)	21, 213, 234, 358, 824, 912
DpnI	GATC	4 cut(s)	194, 547, 725, 801
DpnII	GATC	4 cut(s)	192, 545, 723, 799
EaeI	YGGCCR	1 cut(s)	498
Eam1104I	CTCTTC	3 cut(s)	79, 325, 362
EarI	CTCTTC	3 cut(s)	79, 325, 362
Eco130I	CCWWGG	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	477
Eco81I	CCTNAGG	1 cut(s)	912
Eco88I	CYCGRG	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	157
EcoT22I	ATGCAT	1 cut(s)	903
ErhI	CCWWGG	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	330
FbaI	TGATCA	1 cut(s)	723
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	4 cut(s)	149, 615, 675, 957
FokI	GGATG	2 cut(s)	268, 713
Fsp4HI	GCNGC	4 cut(s)	149, 615, 675, 957
GluI	GCNGC	4 cut(s)	149, 615, 675, 957
GsaI	CCCAGC	1 cut(s)	672
HaeIII	GGCC	2 cut(s)	351, 500
HapII	CCGG	1 cut(s)	253
Hin1I	GRCGYC	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	5 cut(s)	222, 469, 659, 704, 742
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	2 cut(s)	19, 859
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	7 cut(s)	197, 216, 235, 468, 550, 574, 709
Hpy188III	TCNNGA	4 cut(s)	104, 656, 695, 803
Hpy8I	GTNNAC	1 cut(s)	396
Hpy99I	CGWCG	2 cut(s)	292, 295
HpyAV	CCTTC	3 cut(s)	122, 259, 362
HpyCH4III	ACNGT	2 cut(s)	393, 562
HpyCH4IV	ACGT	2 cut(s)	68, 290
HpyCH4V	TGCA	6 cut(s)	410, 614, 763, 832, 901, 956
HpyF10VI	GCNNNNNNNGC	1 cut(s)	674
HpyF3I	CTNAG	6 cut(s)	21, 213, 234, 358, 824, 912
HpySE526I	ACGT	2 cut(s)	68, 290
Hsp92I	GRCGYC	1 cut(s)	290
KpnI	GGTACC	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	723
Kzo9I	GATC	4 cut(s)	192, 545, 723, 799
LmnI	GCTCC	3 cut(s)	643, 836, 928
Lsp1109I	GCAGC	4 cut(s)	160, 626, 686, 968
LweI	GCATC	2 cut(s)	419, 943
MaeII	ACGT	2 cut(s)	68, 290
MaeIII	GTNAC	5 cut(s)	34, 526, 556, 562, 865
MalI	GATC	4 cut(s)	194, 547, 725, 801
MboI	GATC	4 cut(s)	192, 545, 723, 799
MhlI	GDGCHC	1 cut(s)	46
MlsI	TGGCCA	1 cut(s)	500
MluCI	AATT	2 cut(s)	516, 731
MluNI	TGGCCA	1 cut(s)	500
MlyI	GAGTC	2 cut(s)	653, 736
MnlI	CCTC	8 cut(s)	18, 97, 168, 269, 328, 483, 691, 907
Mox20I	TGGCCA	1 cut(s)	500
Mph1103I	ATGCAT	1 cut(s)	903
MroXI	GAANNNNTTC	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	500
MseI	TTAA	1 cut(s)	819
MslI	CAYNNNNRTG	3 cut(s)	533, 699, 896
Msp20I	TGGCCA	1 cut(s)	500
MspI	CCGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	674
NdeII	GATC	4 cut(s)	192, 545, 723, 799
NlaIV	GGNNCC	3 cut(s)	257, 350, 645
NmuCI	GTSAC	3 cut(s)	526, 556, 865
NsiI	ATGCAT	1 cut(s)	903
NspI	RCATGY	4 cut(s)	379, 832, 895, 974
OliI	CACNNNNGTG	1 cut(s)	533
PaeI	GCATGC	1 cut(s)	832
PaeR7I	CTCGAG	1 cut(s)	531
PagI	TCATGA	1 cut(s)	694
PciI	ACATGT	1 cut(s)	970
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	3 cut(s)	222, 469, 704
PflFI	GACNNNGTC	1 cut(s)	201
PflMI	CCANNNNNTGG	1 cut(s)	809
PkrI	GCNGC	4 cut(s)	150, 616, 676, 958
PleI	GAGTC	2 cut(s)	653, 736
PpsI	GAGTC	2 cut(s)	653, 736
PscI	ACATGT	1 cut(s)	970
Psp1406I	AACGTT	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	668
PspN4I	GGNNCC	3 cut(s)	257, 350, 645
PspPI	GGNCC	2 cut(s)	349, 477
PspXI	VCTCGAGB	1 cut(s)	531
PstNI	CAGNNNCTG	1 cut(s)	809
PsyI	GACNNNGTC	1 cut(s)	201
RsaI	GTAC	2 cut(s)	257, 909
RsaNI	GTAC	2 cut(s)	256, 908
RseI	CAYNNNNRTG	3 cut(s)	533, 699, 896
Rsr2I	CGGWCCG	1 cut(s)	477
RsrII	CGGWCCG	1 cut(s)	477
SalI	GTCGAC	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	819
SatI	GCNGC	4 cut(s)	149, 615, 675, 957
Sau3AI	GATC	4 cut(s)	192, 545, 723, 799
Sau96I	GGNCC	2 cut(s)	349, 477
SchI	GAGTC	2 cut(s)	653, 736
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	2 cut(s)	419, 943
Sfr274I	CTCGAG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	477
SlaI	CTCGAG	1 cut(s)	531
SmiMI	CAYNNNNRTG	3 cut(s)	533, 699, 896
SmlI	CTYRAG	1 cut(s)	531
SmoI	CTYRAG	1 cut(s)	531
SphI	GCATGC	1 cut(s)	832
Sse9I	AATT	2 cut(s)	516, 731
SsiI	CCGC	2 cut(s)	52, 480
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	393, 562
TaiI	ACGT	2 cut(s)	71, 293
TaqI	TCGA	3 cut(s)	395, 532, 657
TaqII	GACCGA	1 cut(s)	465
TasI	AATT	2 cut(s)	516, 731
TfiI	GAWTC	3 cut(s)	222, 469, 704
Tru1I	TTAA	1 cut(s)	819
Tru9I	TTAA	1 cut(s)	819
TscAI	CASTG	4 cut(s)	460, 501, 565, 765
TseFI	GTSAC	3 cut(s)	526, 556, 865
TseI	GCWGC	4 cut(s)	148, 614, 674, 956
Tsp45I	GTSAC	3 cut(s)	526, 556, 865
TspDTI	ATGAA	4 cut(s)	500, 573, 683, 957
TspRI	CASTG	4 cut(s)	460, 501, 565, 765
Tth111I	GACNNNGTC	1 cut(s)	201
Van91I	CCANNNNNTGG	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	477
XceI	RCATGY	4 cut(s)	379, 832, 895, 974
XhoI	CTCGAG	1 cut(s)	531
XmiI	GTMKAC	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	221
ZraI	GACGTC	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.