Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003492.1

Orthogroup ID

OG0011072

Physical Location & Seq

Genomic Coordinates Forward (+)

29614 .. 30178

Gene Structure 565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003492.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgaggggtttggcaagattgatcggacgcagtctttcatctcacaaaagattccaaccctctggaccatccactaccttccgctgcatctctcgccggacctatttcctctctgcttatttgggtcgccgtatctccccctcttctcctgcttcatctcctttcgcttctacaaaatggggccttctttcagggcagaggagaagcatgtttatacaaacacagtccacacccaatcctgcatctcttatgttttaccccgggaagcctgttatggaagttggcagtgcagactttccgaatgcccggtccgccatgaattccccactggccaaagccctttatggaattgatggtaaaatcattcttgacattattgatggtgttctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005198 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nfu_N NifU

Protein Analysis

130

Amino Acids

14.17

Weight (kDa)

11.18

Isoelectric Point (pI)

71.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51390 AT3G20970 AT3G20970
fragaria_vesca	FvH4_1g23510 FvH4_1g23510
malus_domestica	MD04G1028700.v1.1
prunus_persica	Prupe.2G079800_v2.0.a1
pyrus_communis	pycom04g02500
rosa_chinensis	RchiOBHm_Chr2g0118911
rosa_laevigata	RLG00000018435
rosa_multiflora	Rmu_sc0001653.1_g000031 Rmu_sc0003492.1_g000006
rosa_roxburghii	Rroxscaffold_2G00124590 Rroxscaffold_2G00144600
rosa_rugosa	Rorug02G0219500
rosa_samantha	Rh2AG276800 Rh2BG288500 Rh2DG283800 Rh2DG302900
rosa_wichuraiana	Rw2G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	82, 312
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	319
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	2 cut(s)	181, 330
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	319
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AspS9I	GGNCC	4 cut(s)	65, 99, 181, 309
AsuC2I	CCSGG	3 cut(s)	261, 262, 307
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	3 cut(s)	65, 99, 309
BalI	TGGCCA	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	3 cut(s)	76, 347, 374
BceAI	ACGGC	1 cut(s)	114
BcnI	CCSGG	3 cut(s)	261, 262, 307
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
Bme1390I	CCNGG	3 cut(s)	261, 262, 307
Bme18I	GGWCC	3 cut(s)	65, 99, 309
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	4 cut(s)	65, 99, 181, 309
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	3 cut(s)	261, 262, 307
BmsI	GCATC	2 cut(s)	96, 251
BpuMI	CCSGG	3 cut(s)	261, 262, 307
BsaJI	CCNNGG	2 cut(s)	259, 260
Bse1I	ACTGG	1 cut(s)	333
BseDI	CCNNGG	2 cut(s)	259, 260
BseGI	GGATG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	183, 332
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	3 cut(s)	97, 261, 307
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	183, 332
BsoBI	CYCGRG	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	2 cut(s)	82, 312
BspANI	GGCC	2 cut(s)	183, 332
BspLI	GGNNCC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	259, 260
BssMI	GATC	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	225
Bst6I	CTCTTC	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	68
BstKTI	GATC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 311
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	3 cut(s)	259, 260, 305
BstV1I	GCAGC	1 cut(s)	71
BstXI	CCANNNNNNTGG	1 cut(s)	62
BsuRI	GGCC	2 cut(s)	183, 332
BtsCI	GGATG	1 cut(s)	68
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	292, 326
Cfr13I	GGNCC	4 cut(s)	65, 99, 181, 309
Cfr9I	CCCGGG	1 cut(s)	260
CpoI	CGGWCCG	1 cut(s)	309
CseI	GACGC	1 cut(s)	36
CspI	CGGWCCG	1 cut(s)	309
CviAII	CATG	2 cut(s)	208, 316
CviJI	RGCY	4 cut(s)	183, 268, 332, 338
CviKI_1	RGCY	4 cut(s)	183, 268, 332, 338
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
EciI	GGCGGA	1 cut(s)	301
Eco47I	GGWCC	3 cut(s)	65, 99, 309
Eco88I	CYCGRG	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	319
FaeI	CATG	2 cut(s)	211, 319
FaiI	YATR	6 cut(s)	209, 215, 251, 275, 317, 345
FatI	CATG	2 cut(s)	207, 315
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	183, 332
HapII	CCGG	3 cut(s)	97, 261, 307
HgaI	GACGC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	211, 319
HinfI	GANTC	1 cut(s)	51
HpaII	CCGG	3 cut(s)	97, 261, 307
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	2 cut(s)	26, 300
Hpy188III	TCNNGA	2 cut(s)	63, 368
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	2 cut(s)	88, 194
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	87, 242, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 311
Hsp92II	CATG	2 cut(s)	211, 319
Kzo9I	GATC	1 cut(s)	21
LpnPI	CCDG	9 cut(s)	48, 110, 162, 177, 252, 274, 282, 314, 320
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	2 cut(s)	96, 251
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	2 cut(s)	319, 348
MluNI	TGGCCA	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	4 cut(s)	70, 119, 151, 192
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	3 cut(s)	97, 261, 307
MspR9I	CCNGG	3 cut(s)	261, 262, 307
Mva1269I	GAATGC	1 cut(s)	307
MwoI	GCNNNNNNNGC	2 cut(s)	93, 311
NciI	CCSGG	3 cut(s)	261, 262, 307
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	2 cut(s)	211, 319
NlaIV	GGNNCC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	211
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	51
PflFI	GACNNNGTC	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	4 cut(s)	65, 99, 181, 309
PsyI	GACNNNGTC	1 cut(s)	30
Rsr2I	CGGWCCG	1 cut(s)	309
RsrII	CGGWCCG	1 cut(s)	309
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	4 cut(s)	65, 99, 181, 309
ScrFI	CCNGG	3 cut(s)	261, 262, 307
SetI	ASST	2 cut(s)	80, 104
SfaNI	GCATC	2 cut(s)	96, 251
SinI	GGWCC	3 cut(s)	65, 99, 309
SmaI	CCCGGG	1 cut(s)	262
Sse9I	AATT	2 cut(s)	319, 348
SsiI	CCGC	2 cut(s)	82, 312
StyD4I	CCNGG	3 cut(s)	259, 260, 305
TaaI	ACNGT	1 cut(s)	225
TasI	AATT	2 cut(s)	319, 348
TfiI	GAWTC	1 cut(s)	51
TscAI	CASTG	2 cut(s)	292, 333
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	3 cut(s)	27, 144, 332
TspMI	CCCGGG	1 cut(s)	260
TspRI	CASTG	2 cut(s)	292, 333
Tth111I	GACNNNGTC	1 cut(s)	30
VpaK11BI	GGWCC	3 cut(s)	65, 99, 309
XapI	RAATTY	1 cut(s)	319
XceI	RCATGY	1 cut(s)	211
XmaI	CCCGGG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.