Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002721

Physical Location & Seq

Genomic Coordinates Reverse (-)

19064598 .. 19066989

Gene Structure 2392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51420.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGAGCGGTTAACATCTCCTCCTCGTCTAATGATAGTCTCCGATCTTGACGAAACCATGGTTGATCATCATAAAGATCCTGAGAATCTAGCTCTATTGAGGTTTAATTCATTGTGGGAAGACGCTTATCGACACGACTCTCTTCTTGTTTTCTCAACAGGAAGAGCTCAAACAATGTACAAGAAACTGAGAAAAGAGAAACCTTTGTTAACCCCTGATGTTATCATTACTTCTGTAGGAACTGAGATAGCTTATGGTAACTCAATGGTTCCTGATGATAATTGGGTTGAAATCTTGAATAAGAAATGGGACCGAGGAATCGTCCAAGAAGAAACCAGCAAGTTCCCTGAGTTAACTCTTCAGGGTGAAACAGAACAGAGGCCACACAAGCTTAGCTTTAATATTGACAAGAGTAAGGTTAAGGCAGTGACGAAAGAGCTATCTCCGCGGTTAGAGAAACGTGGGGTTGATGTCAAATTCATTTTCAGTGGAGGAAACGCTTTCGATGTTTTAGCAAAAGGTGGAGGAAAGGGACAAGCTCTTGCTTATCTGCTAAAGAAGCTCAAGACTGAAGGAAAGCTCCCTATCAACACTCTTGCTTGTGGGGACTCTGGAAATGATACTGAACTATTTACCATTCCCAATGTTTATGGTGTCATGGTAAGCAATGCTCAAGAAGAGTTGTTGGAGTGGTATGCTGAAAATGCGAAAGACAATGCAAATATAATCCATGCGAGTGAGAGGTGTGCGGGTGGGATTACACAAGCCATTGGTCACTTTAAGCTTGGTCCAAATCTTTCTCCAAGAGATGTTTCTGACTTCTTGGAGTGCAAGGCGGATAATGTGAACCCGGGTCATGAGGTTGTGAAGTTTTTCTTGTTCTACGAGAGATGGAGACGAGGTGAAGTTGAGAACTGTACGACATACACATCAAGTCTCAAAGCTTCATGTCATCCTTCTGGTGTCTTTGTTCATCCATCTGGTGCTGAAAAGTCTCTCAGAGACACCATTGATGAGCTTGGCAAGTACTATGGAGACAAAAAAGGGAAGAAGTTTCGTGTTTGGACTGATCAGGTCTTGGCAACAGACACAACTCCAGGGACTTGGATAGTAAAGCTTGATAAATGGGAGCAGACTGGGGATGAGAGGAAATGTTGCACAACAACTGTCAAATTCACCTCAAAGGAAGGAGAAGGGTTTGTGTGGGAACATGTGCAGCAAATATGGTCGGAGGAAACAGAGATTAAGGATGATAGCAACTGGATCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005911 GO:0008150 GO:0009506 GO:0010035 GO:0010038 GO:0016020 GO:0016740 GO:0016757 GO:0030054 GO:0031090 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

423

Amino Acids

47.85

Weight (kDa)

5.8

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	10 - 262	3.3e-99	Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3	PF08282	109 - 232	6.7e-12	haloacid dehalogenase-like hydrolase
S6PP_C	PF08472	285 - 412	1.7e-55	Sucrose-6-phosphate phosphohydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51420 AT1G51420 AT1G51420 AT1G51420 AT2G35840 AT2G35840 AT2G35840 AT2G35840 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340
fragaria_vesca	FvH4_6g20950 FvH4_6g20950
malus_domestica	MD12G1045400.v1.1 MD14G1044300.v1.1
prunus_persica	Prupe.7G089300_v2.0.a1 Prupe.7G089300_v2.0.a1
pyrus_communis	pycom12g03920 pycom14g03750
rosa_chinensis	RchiOBHm_Chr3g0477361
rosa_laevigata	RLG00000023729
rosa_multiflora	Rmu_sc0006369.1_g000008
rosa_roxburghii	Rroxscaffold_6G00404250 Rroxscaffold_6G00404730 Rroxscaffold_7G00202730
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700
rosa_samantha	Rh3AG210200 Rh3BG243600 Rh3CG237500 Rh3DG237100
rosa_wichuraiana	Rw0G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	7
AccII	CGCG	1 cut(s)	448
AciI	CCGC	5 cut(s)	7, 446, 448, 749, 836
AclWI	GGATC	2 cut(s)	71, 1271
AcsI	RAATTY	2 cut(s)	476, 1172
AcuI	CTGAAG	2 cut(s)	344, 591
AfaI	GTAC	3 cut(s)	179, 919, 1028
AflIII	ACRYGT	1 cut(s)	1210
AgsI	TTSAA	2 cut(s)	290, 298
AjnI	CCWGG	1 cut(s)	1096
AjuI	GAANNNNNNNTTGG	2 cut(s)	796, 828
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	6 cut(s)	43, 889, 941, 996, 999, 1029
AlwI	GGATC	2 cut(s)	71, 1271
Ama87I	CYCGRG	1 cut(s)	850
AoxI	GGCC	1 cut(s)	380
ApeKI	GCWGC	1 cut(s)	1216
ApoI	RAATTY	2 cut(s)	476, 1172
Asp700I	GAANNNNTTC	1 cut(s)	872
AspS9I	GGNCC	2 cut(s)	310, 788
AsuC2I	CCSGG	2 cut(s)	851, 852
AsuHPI	GGTGA	3 cut(s)	377, 914, 1168
AvaI	CYCGRG	1 cut(s)	850
AvaII	GGWCC	2 cut(s)	310, 788
BanII	GRGCYC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	1228
BccI	CCATC	2 cut(s)	885, 985
BciT130I	CCWGG	1 cut(s)	1098
BclI	TGATCA	2 cut(s)	64, 1069
BcnI	CCSGG	2 cut(s)	851, 852
BcoDI	GTCTC	6 cut(s)	43, 889, 941, 996, 999, 1029
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	1 cut(s)	1217
BlpI	GCTNAGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	1218
BmcAI	AGTACT	1 cut(s)	1028
Bme1390I	CCNGG	3 cut(s)	851, 852, 1098
Bme18I	GGWCC	2 cut(s)	310, 788
BmeT110I	CYCGRG	1 cut(s)	850
BmgT120I	GGNCC	2 cut(s)	310, 788
BmiI	GGNNCC	2 cut(s)	270, 311
BmrFI	CCNGG	3 cut(s)	851, 852, 1098
BmrI	ACTGGG	1 cut(s)	1146
BmuI	ACTGGG	1 cut(s)	1146
BpiI	GAAGAC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	1080
Bpu1102I	GCTNAGC	1 cut(s)	392
BpuEI	CTTGAG	2 cut(s)	548, 657
BpuMI	CCSGG	2 cut(s)	851, 852
BsaJI	CCNNGG	5 cut(s)	57, 313, 446, 850, 1097
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 886, 916
Bse1I	ACTGG	2 cut(s)	1141, 1265
Bse3DI	GCAATG	1 cut(s)	673
BseBI	CCWGG	1 cut(s)	1098
BseDI	CCNNGG	5 cut(s)	57, 313, 446, 850, 1097
BseGI	GGATG	4 cut(s)	952, 973, 1147, 1255
BseMI	GCAATG	1 cut(s)	673
BseMII	CTCAG	5 cut(s)	72, 179, 234, 339, 1012
BseNI	ACTGG	2 cut(s)	1141, 1265
BseRI	GAGGAG	2 cut(s)	9, 12
BseXI	GCAGC	1 cut(s)	1228
BsgI	GTGCAG	1 cut(s)	1235
Bsh1236I	CGCG	1 cut(s)	448
BshFI	GGCC	1 cut(s)	382
BsiHKAI	GWGCWC	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	850
BsiSI	CCGG	1 cut(s)	851
BslFI	GGGAC	4 cut(s)	323, 546, 620, 1114
BsmAI	GTCTC	6 cut(s)	43, 889, 941, 996, 999, 1029
BsmBI	CGTCTC	1 cut(s)	889
BsmFI	GGGAC	4 cut(s)	323, 546, 620, 1114
BsnI	GGCC	1 cut(s)	382
BsoBI	CYCGRG	1 cut(s)	850
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	5 cut(s)	43, 64, 76, 1069, 1263
Bsp1720I	GCTNAGC	1 cut(s)	392
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	5 cut(s)	7, 446, 448, 749, 836
BspANI	GGCC	1 cut(s)	382
BspCNI	CTCAG	5 cut(s)	73, 180, 235, 340, 1011
BspFNI	CGCG	1 cut(s)	448
BspHI	TCATGA	1 cut(s)	856
BspLI	GGNNCC	2 cut(s)	270, 311
BspPI	GGATC	2 cut(s)	71, 1271
BspQI	GCTCTTC	1 cut(s)	157
BsrBI	CCGCTC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	673
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	2 cut(s)	1141, 1265
BssECI	CCNNGG	5 cut(s)	57, 313, 446, 850, 1097
BssMI	GATC	5 cut(s)	43, 64, 76, 1069, 1263
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	1098
Bst4CI	ACNGT	2 cut(s)	917, 1168
Bst6I	CTCTTC	4 cut(s)	147, 157, 363, 672
BstAUI	TGTACA	1 cut(s)	177
BstDEI	CTNAG	6 cut(s)	81, 188, 243, 348, 392, 998
BstDSI	CCRYGG	2 cut(s)	57, 446
BstF5I	GGATG	4 cut(s)	952, 973, 1147, 1255
BstFNI	CGCG	1 cut(s)	448
BstKTI	GATC	5 cut(s)	46, 67, 79, 1072, 1266
BstMAI	GTCTC	6 cut(s)	43, 889, 941, 996, 999, 1029
BstMBI	GATC	5 cut(s)	43, 64, 76, 1069, 1263
BstMWI	GCNNNNNNNGC	4 cut(s)	388, 445, 559, 704
BstNI	CCWGG	1 cut(s)	1098
BstNSI	RCATGY	1 cut(s)	1214
BstSCI	CCNGG	3 cut(s)	849, 850, 1096
BstSFI	CTRYAG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	1228
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	1104
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	382
BtgI	CCRYGG	2 cut(s)	57, 446
BtsCI	GGATG	4 cut(s)	952, 973, 1147, 1255
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	432, 493
CciI	TCATGA	1 cut(s)	856
Cfr13I	GGNCC	2 cut(s)	310, 788
Cfr42I	CCGCGG	1 cut(s)	449
Cfr9I	CCCGGG	1 cut(s)	850
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	3 cut(s)	178, 918, 1027
CviAII	CATG	6 cut(s)	58, 658, 731, 857, 948, 1211
CviQI	GTAC	3 cut(s)	178, 918, 1027
DdeI	CTNAG	6 cut(s)	81, 188, 243, 348, 392, 998
DpnI	GATC	5 cut(s)	45, 66, 78, 1071, 1265
DpnII	GATC	5 cut(s)	43, 64, 76, 1069, 1263
Eam1104I	CTCTTC	4 cut(s)	147, 157, 363, 672
EarI	CTCTTC	4 cut(s)	147, 157, 363, 672
EciI	GGCGGA	1 cut(s)	851
Ecl136II	GAGCTC	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	169
Eco47I	GGWCC	2 cut(s)	310, 788
Eco53kI	GAGCTC	1 cut(s)	167
Eco57I	CTGAAG	2 cut(s)	344, 591
Eco88I	CYCGRG	1 cut(s)	850
EcoICRI	GAGCTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	1096
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	57
Esp3I	CGTCTC	1 cut(s)	889
FaeI	CATG	6 cut(s)	61, 661, 734, 860, 951, 1214
FalI	AAGNNNNNCTT	4 cut(s)	380, 412, 860, 892
FaqI	GGGAC	4 cut(s)	323, 546, 620, 1114
FatI	CATG	6 cut(s)	57, 657, 730, 856, 947, 1210
FauI	CCCGC	1 cut(s)	742
FbaI	TGATCA	2 cut(s)	64, 1069
Fnu4HI	GCNGC	1 cut(s)	1217
FokI	GGATG	4 cut(s)	939, 960, 1154, 1262
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	1217
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	1 cut(s)	1217
GsuI	CTGGAG	1 cut(s)	1080
HaeIII	GGCC	1 cut(s)	382
HapII	CCGG	1 cut(s)	851
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	6 cut(s)	61, 661, 734, 860, 951, 1214
HincII	GTYRAC	3 cut(s)	12, 210, 354
HindII	GTYRAC	3 cut(s)	12, 210, 354
HindIII	AAGCTT	4 cut(s)	389, 782, 942, 1115
HinfI	GANTC	4 cut(s)	85, 137, 318, 608
HpaI	GTTAAC	3 cut(s)	12, 210, 354
HpaII	CCGG	1 cut(s)	851
HphI	GGTGA	3 cut(s)	377, 914, 1168
Hpy166II	GTNNAC	4 cut(s)	12, 210, 354, 847
Hpy188I	TCNGA	5 cut(s)	43, 817, 1001, 1231, 1271
Hpy188III	TCNNGA	8 cut(s)	47, 80, 272, 295, 565, 612, 674, 857
Hpy8I	GTNNAC	4 cut(s)	12, 210, 354, 847
HpyAV	CCTTC	4 cut(s)	566, 966, 1181, 1187
HpyCH4III	ACNGT	2 cut(s)	917, 1168
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	4 cut(s)	719, 831, 1158, 1216
HpyF10VI	GCNNNNNNNGC	4 cut(s)	388, 445, 559, 704
HpyF3I	CTNAG	6 cut(s)	81, 188, 243, 348, 392, 998
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	6 cut(s)	61, 661, 734, 860, 951, 1214
Ksp22I	TGATCA	2 cut(s)	64, 1069
KspAI	GTTAAC	3 cut(s)	12, 210, 354
KspI	CCGCGG	1 cut(s)	449
Kzo9I	GATC	5 cut(s)	43, 64, 76, 1069, 1263
LguI	GCTCTTC	1 cut(s)	157
LmnI	GCTCC	3 cut(s)	4, 585, 1129
Lsp1109I	GCAGC	1 cut(s)	1228
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	3 cut(s)	257, 427, 773
MalI	GATC	5 cut(s)	45, 66, 78, 1071, 1265
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	5 cut(s)	43, 64, 76, 1069, 1263
MboII	GAAGA	7 cut(s)	131, 134, 174, 341, 350, 689, 1060
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	4 cut(s)	106, 280, 476, 1172
MlyI	GAGTC	2 cut(s)	131, 602
MmeI	TCCRAC	2 cut(s)	666, 1209
MroXI	GAANNNNTTC	1 cut(s)	872
MseI	TTAA	8 cut(s)	11, 105, 209, 353, 399, 420, 780, 1245
MslI	CAYNNNNRTG	1 cut(s)	735
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	1 cut(s)	851
MspR9I	CCNGG	3 cut(s)	851, 852, 1098
MvaI	CCWGG	1 cut(s)	1098
MvnI	CGCG	1 cut(s)	448
MwoI	GCNNNNNNNGC	4 cut(s)	388, 445, 559, 704
NciI	CCSGG	2 cut(s)	851, 852
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	5 cut(s)	43, 64, 76, 1069, 1263
NlaIII	CATG	6 cut(s)	61, 661, 734, 860, 951, 1214
NlaIV	GGNNCC	2 cut(s)	270, 311
NmuCI	GTSAC	2 cut(s)	427, 773
NspI	RCATGY	1 cut(s)	1214
PagI	TCATGA	1 cut(s)	856
PciI	ACATGT	1 cut(s)	1210
PciSI	GCTCTTC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	872
PfeI	GAWTC	2 cut(s)	85, 318
PkrI	GCNGC	1 cut(s)	1218
PleI	GAGTC	2 cut(s)	131, 602
PpsI	GAGTC	2 cut(s)	131, 602
PscI	ACATGT	1 cut(s)	1210
Psp124BI	GAGCTC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	1096
PspGI	CCWGG	1 cut(s)	1096
PspN4I	GGNNCC	2 cut(s)	270, 311
PspPI	GGNCC	2 cut(s)	310, 788
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	3 cut(s)	179, 919, 1028
RsaNI	GTAC	3 cut(s)	178, 918, 1027
RseI	CAYNNNNRTG	1 cut(s)	735
SacI	GAGCTC	1 cut(s)	169
SacII	CCGCGG	1 cut(s)	449
SapI	GCTCTTC	1 cut(s)	157
SaqAI	TTAA	8 cut(s)	11, 105, 209, 353, 399, 420, 780, 1245
SatI	GCNGC	1 cut(s)	1217
Sau3AI	GATC	5 cut(s)	43, 64, 76, 1069, 1263
Sau96I	GGNCC	2 cut(s)	310, 788
ScaI	AGTACT	1 cut(s)	1028
SchI	GAGTC	2 cut(s)	131, 602
ScrFI	CCNGG	3 cut(s)	851, 852, 1098
SduI	GDGCHC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	234
Sfr303I	CCGCGG	1 cut(s)	449
SgrBI	CCGCGG	1 cut(s)	449
SinI	GGWCC	2 cut(s)	310, 788
SmaI	CCCGGG	1 cut(s)	852
SmiMI	CAYNNNNRTG	1 cut(s)	735
SmlI	CTYRAG	2 cut(s)	563, 672
SmoI	CTYRAG	2 cut(s)	563, 672
Sse9I	AATT	4 cut(s)	106, 280, 476, 1172
SsiI	CCGC	5 cut(s)	7, 446, 448, 749, 836
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	1 cut(s)	89
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	3 cut(s)	849, 850, 1096
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	917, 1168
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	2 cut(s)	130, 504
TaqII	GACCGA	1 cut(s)	327
TasI	AATT	4 cut(s)	106, 280, 476, 1172
TatI	WGTACW	2 cut(s)	177, 1026
TfiI	GAWTC	2 cut(s)	85, 318
Tru1I	TTAA	8 cut(s)	11, 105, 209, 353, 399, 420, 780, 1245
Tru9I	TTAA	8 cut(s)	11, 105, 209, 353, 399, 420, 780, 1245
TscAI	CASTG	2 cut(s)	432, 493
TseFI	GTSAC	2 cut(s)	427, 773
TseI	GCWGC	1 cut(s)	1216
Tsp45I	GTSAC	2 cut(s)	427, 773
TspDTI	ATGAA	4 cut(s)	99, 469, 936, 962
TspMI	CCCGGG	1 cut(s)	850
TspRI	CASTG	2 cut(s)	432, 493
VpaK11BI	GGWCC	2 cut(s)	310, 788
XapI	RAATTY	2 cut(s)	476, 1172
XceI	RCATGY	1 cut(s)	1214
XmaI	CCCGGG	1 cut(s)	850
XmnI	GAANNNNTTC	1 cut(s)	872
XspI	CTAG	1 cut(s)	89
ZrmI	AGTACT	1 cut(s)	1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.