Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002721

Physical Location & Seq

Genomic Coordinates Forward (+)

19406853 .. 19409457

Gene Structure 2605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52340.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGAGCGGCTGATTTCTCATCCTCCTCTCATGATCGTCTCAGACCTTGATCACACCATGGTTGATCATCAAGATCATGAGAACCTCTCTCTTCTCAGGTTCAATTCATTGTGGGAATACGCTTATCGCCGTGACTCTCTTCTTGTCTTCTCTACAGCAAGATCACCTGTTCTTTATAAAGAATTGAGAAAAGAGAAACCTTTGTTGACTCCTGATATCATTATTACATCAATAGGAACTGAGATAGCATTTGGTAACTCCATGGTTCCTGATCATGCTTGGGTTGAATCCTTGAACAGCTGTAAATGGAACCGGGAAATAGTCTTGGAAGAAACTAGCAAGTTCCCTGAGTTAACTCTTCAGCCAAAAACTGAGCAGAGGCTACACAAGGTCAGCTTTTACATTGATGAAGGTAAAGGTGAGGCATTGACCAAGGAACTATCACAATTGCTGGAGAAACGTGGCTTGGATGTCAAGATAATTTACAGTTGGGGAAAGAATGTCGATGTTATACCGCGTGGTGCAGGAAAAGGAGAAGCGCTTGAGTATCTTCTCAAGAAGCTGCAGGCTGAAGGAATATTCCCGGTCAATACTCTTGCTTGTGGTGACTCTGAACATGATGCTGAACTATTTAGCATTCCTGATGTTCACGGTGTTATGGTGAGCAATTCCCAAGAAGAGCTATTGAAGTGGCGTTCTGAAAATGCGTTGAACAACCTTAAGGTTATACATTCAACCGAGAGGTGTGCTGATGGGATTATTCAAGCCATCGGACATTTTAATCTTGGTCCCGATCTATCTCCAAGAGATGTTTCGGAATTCTTGGATCGTAAGATGGACAATGTGAATCCTGGTCACGAGGTTGTGAGATTCTACTTGTTCTACGAGAGATTGAGACGCGGTGAGATCAAGAACTATGAGACATACATAGCCAGCTTCAAAGATTCATGTCTCCATGCTGCTGTCCTTTTTCATCCATCAGGTGCAGAAAAATCTCTGAGAGACACCATTGATGAGCTGAAGAAGTGTTATGGTGACAAAAGAGGGAAGAAGTTTTGGGTTTGGGTAGATCAGGTTCTGGTAACAGACACCATTCCTGGCAAATGGATAGTGAAGTTTGATAAGTGGGAGCAATGCGAGGATGAAAGCCAATGCTGCAAAACGACTGTCGAATTTACTTCAAAGGGAGGAGATTTGGTGTGGGAGAAGGTGAAGCAGATATGGTCAGAGGAATCAAAGGTGAAAGATGATAACAGTTCTTGGATTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

423

Amino Acids

48.68

Weight (kDa)

5.56

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	9 - 261	4.5e-96	Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3	PF08282	117 - 230	3.8e-11	haloacid dehalogenase-like hydrolase
S6PP_C	PF08472	284 - 410	2.2e-52	Sucrose-6-phosphate phosphohydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51420 AT1G51420 AT1G51420 AT1G51420 AT2G35840 AT2G35840 AT2G35840 AT2G35840 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340
fragaria_vesca	FvH4_6g20950 FvH4_6g20950
malus_domestica	MD12G1045400.v1.1 MD14G1044300.v1.1
prunus_persica	Prupe.7G089300_v2.0.a1 Prupe.7G089300_v2.0.a1
pyrus_communis	pycom12g03920 pycom14g03750
rosa_chinensis	RchiOBHm_Chr3g0477361
rosa_laevigata	RLG00000023729
rosa_multiflora	Rmu_sc0006369.1_g000008
rosa_roxburghii	Rroxscaffold_6G00404250 Rroxscaffold_6G00404730 Rroxscaffold_7G00202730
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700
rosa_samantha	Rh3AG210200 Rh3BG243600 Rh3CG237500 Rh3DG237100
rosa_wichuraiana	Rw0G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
AccBSI	CCGCTC	1 cut(s)	7
AccII	CGCG	2 cut(s)	517, 900
AciI	CCGC	3 cut(s)	7, 515, 900
AclWI	GGATC	1 cut(s)	834
AcsI	RAATTY	2 cut(s)	818, 1172
AcuI	CTGAAG	3 cut(s)	344, 591, 1040
AfeI	AGCGCT	1 cut(s)	540
AflII	CTTAAG	1 cut(s)	719
AgsI	TTSAA	9 cut(s)	103, 287, 295, 688, 712, 735, 764, 940, 1182
AjnI	CCWGG	2 cut(s)	850, 1096
AjuI	GAANNNNNNNTTGG	4 cut(s)	449, 481, 796, 828
AluBI	AGCT	6 cut(s)	300, 396, 562, 682, 936, 1018
AluI	AGCT	6 cut(s)	300, 396, 562, 682, 936, 1018
Alw26I	GTCTC	5 cut(s)	43, 889, 914, 956, 996
AlwI	GGATC	1 cut(s)	834
AlwNI	CAGNNNCTG	1 cut(s)	1078
Aor51HI	AGCGCT	1 cut(s)	540
ApeKI	GCWGC	3 cut(s)	562, 959, 1155
ApoI	RAATTY	2 cut(s)	818, 1172
ArsI	GACNNNNNNTTYG	2 cut(s)	1152, 1184
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	1 cut(s)	788
AsuC2I	CCSGG	2 cut(s)	314, 584
AsuHPI	GGTGA	8 cut(s)	156, 431, 617, 673, 914, 1046, 1222, 1252
AvaII	GGWCC	1 cut(s)	788
BauI	CACGAG	1 cut(s)	857
BbsI	GAAGAC	1 cut(s)	139
BbvI	GCAGC	3 cut(s)	549, 946, 1142
BccI	CCATC	4 cut(s)	746, 776, 829, 985
BceAI	ACGGC	1 cut(s)	114
BcgI	CGANNNNNNTGC	2 cut(s)	728, 762
BciT130I	CCWGG	2 cut(s)	852, 1098
BclI	TGATCA	3 cut(s)	49, 64, 271
BcnI	CCSGG	2 cut(s)	314, 584
BcoDI	GTCTC	5 cut(s)	43, 889, 914, 956, 996
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	2 cut(s)	153, 563
BfoI	RGCGCY	1 cut(s)	542
BfrI	CTTAAG	1 cut(s)	719
BisI	GCNGC	4 cut(s)	8, 563, 960, 1156
BlsI	GCNGC	4 cut(s)	9, 564, 961, 1157
Bme1390I	CCNGG	4 cut(s)	314, 584, 852, 1098
Bme18I	GGWCC	1 cut(s)	788
BmgT120I	GGNCC	1 cut(s)	788
BmiI	GGNNCC	3 cut(s)	267, 311, 790
BmrFI	CCNGG	4 cut(s)	314, 584, 852, 1098
BmsI	GCATC	1 cut(s)	610
BpiI	GAAGAC	1 cut(s)	139
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
BpmI	CTGGAG	1 cut(s)	473
BpuEI	CTTGAG	2 cut(s)	539, 563
BpuMI	CCSGG	2 cut(s)	314, 584
BsaJI	CCNNGG	3 cut(s)	57, 261, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	1182, 1212
Bse3DI	GCAATG	1 cut(s)	1139
BseBI	CCWGG	2 cut(s)	852, 1098
BseDI	CCNNGG	3 cut(s)	57, 261, 432
BseGI	GGATG	4 cut(s)	19, 475, 973, 1147
BseMI	GCAATG	1 cut(s)	1139
BseMII	CTCAG	6 cut(s)	54, 109, 231, 339, 363, 989
BseRI	GAGGAG	2 cut(s)	15, 1203
BseXI	GCAGC	3 cut(s)	549, 946, 1142
BsgI	GTGCAG	2 cut(s)	543, 1005
Bsh1236I	CGCG	2 cut(s)	517, 900
BsiSI	CCGG	2 cut(s)	313, 584
BslFI	GGGAC	1 cut(s)	774
BsmAI	GTCTC	5 cut(s)	43, 889, 914, 956, 996
BsmBI	CGTCTC	2 cut(s)	43, 889
BsmFI	GGGAC	1 cut(s)	774
BsmI	GAATGC	1 cut(s)	636
Bsp19I	CCATGG	2 cut(s)	57, 261
BspACI	CCGC	3 cut(s)	7, 515, 900
BspCNI	CTCAG	6 cut(s)	53, 108, 232, 340, 364, 990
BspFNI	CGCG	2 cut(s)	517, 900
BspHI	TCATGA	2 cut(s)	30, 76
BspLI	GGNNCC	3 cut(s)	267, 311, 790
BspMAI	CTGCAG	1 cut(s)	567
BspPI	GGATC	1 cut(s)	834
BspQI	GCTCTTC	1 cut(s)	672
BspTI	CTTAAG	1 cut(s)	719
BsrBI	CCGCTC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	1139
BssECI	CCNNGG	3 cut(s)	57, 261, 432
BssSI	CACGAG	1 cut(s)	857
BssT1I	CCWWGG	3 cut(s)	57, 261, 432
Bst2BI	CACGAG	1 cut(s)	857
Bst2UI	CCWGG	2 cut(s)	852, 1098
Bst4CI	ACNGT	4 cut(s)	488, 653, 1168, 1256
Bst6I	CTCTTC	4 cut(s)	96, 144, 363, 672
BstAFI	CTTAAG	1 cut(s)	719
BstC8I	GCNNGC	2 cut(s)	567, 934
BstDEI	CTNAG	6 cut(s)	40, 95, 240, 348, 372, 998
BstDSI	CCRYGG	2 cut(s)	57, 261
BstF5I	GGATG	4 cut(s)	19, 475, 973, 1147
BstFNI	CGCG	2 cut(s)	517, 900
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	1 cut(s)	541
BstMAI	GTCTC	5 cut(s)	43, 889, 914, 956, 996
BstMWI	GCNNNNNNNGC	1 cut(s)	1155
BstNI	CCWGG	2 cut(s)	852, 1098
BstSCI	CCNGG	4 cut(s)	312, 582, 850, 1096
BstSFI	CTRYAG	2 cut(s)	153, 563
BstUI	CGCG	2 cut(s)	517, 900
BstV1I	GCAGC	3 cut(s)	549, 946, 1142
BstV2I	GAAGAC	1 cut(s)	139
BtgI	CCRYGG	2 cut(s)	57, 261
BtsCI	GGATG	4 cut(s)	19, 475, 973, 1147
Cac8I	GCNNGC	2 cut(s)	567, 934
CaiI	CAGNNNCTG	1 cut(s)	1078
CciI	TCATGA	2 cut(s)	30, 76
CfoI	GCGC	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	788
CseI	GACGC	1 cut(s)	906
CviAII	CATG	8 cut(s)	31, 58, 77, 262, 275, 617, 948, 956
DdeI	CTNAG	6 cut(s)	40, 95, 240, 348, 372, 998
Eam1104I	CTCTTC	4 cut(s)	96, 144, 363, 672
EarI	CTCTTC	4 cut(s)	96, 144, 363, 672
Eco130I	CCWWGG	3 cut(s)	57, 261, 432
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	788
Eco47III	AGCGCT	1 cut(s)	540
Eco57I	CTGAAG	3 cut(s)	344, 591, 1040
EcoRI	GAATTC	1 cut(s)	818
EcoRII	CCWGG	2 cut(s)	850, 1096
EcoRV	GATATC	1 cut(s)	217
EcoT14I	CCWWGG	3 cut(s)	57, 261, 432
ErhI	CCWWGG	3 cut(s)	57, 261, 432
Esp3I	CGTCTC	2 cut(s)	43, 889
FaeI	CATG	8 cut(s)	34, 61, 80, 265, 278, 620, 951, 959
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FaqI	GGGAC	1 cut(s)	774
FatI	CATG	8 cut(s)	30, 57, 76, 261, 274, 616, 947, 955
FbaI	TGATCA	3 cut(s)	49, 64, 271
Fnu4HI	GCNGC	4 cut(s)	8, 563, 960, 1156
FokI	GGATG	4 cut(s)	6, 482, 960, 1154
Fsp4HI	GCNGC	4 cut(s)	8, 563, 960, 1156
FspBI	CTAG	1 cut(s)	336
GlaI	GCGC	1 cut(s)	540
GluI	GCNGC	4 cut(s)	8, 563, 960, 1156
GsuI	CTGGAG	1 cut(s)	473
HaeII	RGCGCY	1 cut(s)	542
HapII	CCGG	2 cut(s)	313, 584
HgaI	GACGC	1 cut(s)	906
HhaI	GCGC	1 cut(s)	541
Hin1II	CATG	8 cut(s)	34, 61, 80, 265, 278, 620, 951, 959
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HincII	GTYRAC	2 cut(s)	207, 354
HindII	GTYRAC	2 cut(s)	207, 354
HinfI	GANTC	9 cut(s)	134, 208, 287, 608, 847, 870, 944, 1232, 1264
HpaI	GTTAAC	1 cut(s)	354
HpaII	CCGG	2 cut(s)	313, 584
HphI	GGTGA	8 cut(s)	156, 431, 617, 673, 914, 1046, 1222, 1252
Hpy166II	GTNNAC	3 cut(s)	207, 354, 649
Hpy188I	TCNGA	8 cut(s)	43, 613, 700, 773, 817, 999, 1228, 1271
Hpy8I	GTNNAC	3 cut(s)	207, 354, 649
HpyAV	CCTTC	3 cut(s)	404, 566, 1201
HpyCH4III	ACNGT	4 cut(s)	488, 653, 1168, 1256
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	4 cut(s)	524, 565, 986, 1158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1155
HpyF3I	CTNAG	6 cut(s)	40, 95, 240, 348, 372, 998
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	8 cut(s)	34, 61, 80, 265, 278, 620, 951, 959
HspAI	GCGC	1 cut(s)	539
Ksp22I	TGATCA	3 cut(s)	49, 64, 271
KspAI	GTTAAC	1 cut(s)	354
LguI	GCTCTTC	1 cut(s)	672
LmnI	GCTCC	2 cut(s)	4, 1129
Lsp1109I	GCAGC	3 cut(s)	549, 946, 1142
LweI	GCATC	1 cut(s)	610
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	6 cut(s)	131, 254, 605, 854, 1034, 1081
MbiI	CCGCTC	1 cut(s)	7
MboII	GAAGA	9 cut(s)	83, 131, 139, 341, 350, 542, 689, 1033, 1060
MfeI	CAATTG	1 cut(s)	446
MluCI	AATT	7 cut(s)	103, 182, 446, 480, 667, 818, 1172
MlyI	GAGTC	3 cut(s)	128, 202, 602
MseI	TTAA	3 cut(s)	353, 720, 780
MspA1I	CMGCKG	1 cut(s)	300
MspCI	CTTAAG	1 cut(s)	719
MspI	CCGG	2 cut(s)	313, 584
MspR9I	CCNGG	4 cut(s)	314, 584, 852, 1098
MunI	CAATTG	1 cut(s)	446
Mva1269I	GAATGC	1 cut(s)	636
MvaI	CCWGG	2 cut(s)	852, 1098
MvnI	CGCG	2 cut(s)	517, 900
MwoI	GCNNNNNNNGC	1 cut(s)	1155
NciI	CCSGG	2 cut(s)	314, 584
NcoI	CCATGG	2 cut(s)	57, 261
NlaIII	CATG	8 cut(s)	34, 61, 80, 265, 278, 620, 951, 959
NlaIV	GGNNCC	3 cut(s)	267, 311, 790
NmuCI	GTSAC	4 cut(s)	131, 605, 854, 1034
PagI	TCATGA	2 cut(s)	30, 76
PciSI	GCTCTTC	1 cut(s)	672
PctI	GAATGC	1 cut(s)	636
PfeI	GAWTC	6 cut(s)	287, 847, 870, 944, 1232, 1264
PkrI	GCNGC	4 cut(s)	9, 564, 961, 1157
PleI	GAGTC	3 cut(s)	128, 202, 602
PpsI	GAGTC	3 cut(s)	128, 202, 602
PsiI	TTATAA	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	850, 1096
PspGI	CCWGG	2 cut(s)	850, 1096
PspN4I	GGNNCC	3 cut(s)	267, 311, 790
PspPI	GGNCC	1 cut(s)	788
PsrI	GAACNNNNNNTAC	2 cut(s)	1059, 1091
PstI	CTGCAG	1 cut(s)	567
PstNI	CAGNNNCTG	1 cut(s)	1078
PvuII	CAGCTG	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	672
SaqAI	TTAA	3 cut(s)	353, 720, 780
SatI	GCNGC	4 cut(s)	8, 563, 960, 1156
Sau96I	GGNCC	1 cut(s)	788
SchI	GAGTC	3 cut(s)	128, 202, 602
ScrFI	CCNGG	4 cut(s)	314, 584, 852, 1098
SfaNI	GCATC	1 cut(s)	610
SfcI	CTRYAG	2 cut(s)	153, 563
SinI	GGWCC	1 cut(s)	788
SmlI	CTYRAG	3 cut(s)	542, 554, 719
SmoI	CTYRAG	3 cut(s)	542, 554, 719
Sse9I	AATT	7 cut(s)	103, 182, 446, 480, 667, 818, 1172
SsiI	CCGC	3 cut(s)	7, 515, 900
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	4 cut(s)	312, 582, 850, 1096
StyI	CCWWGG	3 cut(s)	57, 261, 432
TaaI	ACNGT	4 cut(s)	488, 653, 1168, 1256
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	2 cut(s)	504, 1170
TasI	AATT	7 cut(s)	103, 182, 446, 480, 667, 818, 1172
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	6 cut(s)	287, 847, 870, 944, 1232, 1264
Tru1I	TTAA	3 cut(s)	353, 720, 780
Tru9I	TTAA	3 cut(s)	353, 720, 780
TseFI	GTSAC	4 cut(s)	131, 605, 854, 1034
TseI	GCWGC	3 cut(s)	562, 959, 1155
Tsp45I	GTSAC	4 cut(s)	131, 605, 854, 1034
TspDTI	ATGAA	5 cut(s)	96, 423, 936, 962, 1158
Vha464I	CTTAAG	1 cut(s)	719
VpaK11BI	GGWCC	1 cut(s)	788
XapI	RAATTY	2 cut(s)	818, 1172
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.