Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002721

Physical Location & Seq

Genomic Coordinates Forward (+)

26761355 .. 26765601

Gene Structure 4247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00404250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGATCGGCTCAAGGCTCCGGCTCGGCTAATGATAGTTTCGGATCTTGATCATACAATGGTTGATCATCATGACAAGGAGAACCTGTCTCTTCTCCGGTTTAATTCTCTGTGGGAAGCTAATTATCGTCACGACTCTCTGCTTGTCTTTTCAACTGGAAGGTCACCGACACTGTACAAAGAATTGAGGAAAGAGAAACCTATGCTGACTCCTGATATAACAATAATGTCTGTGGGAACTGAGATAACTTACGGTAACGCGATGGTTCCAGATGATGGTTGGGTTGAGGTTCTGAATCAGAAGTGGGATAAGAACATAGTCAAAGAAGAATCAAGCAAGTTTCCTGAACTTAAGCTTCAGGCAGAAACAGAGCAACGGGCACACAAGGTTAGCTTTTATGTTGAGAAAGACAAGGCTCAGACAGTGACAAAGGCTCTTTCAGAGGCTTTGAAACAGCGTGGGTTGGATGTTAAGATAATCTATAGTGGAGGAATAGATTTGGATATATTACCACAAGGTGCTGGAAAAGGACAAGCTCTTGCATATTTGCTTCAGAAATTTAAGACTGAGGGACATCCACCTGTTAATACTCTTGTTTGTGGTGACTCTGGAAATGATGCTGAGCTTTTTAGTATCCCTGAAGTATATGGAGTCATGGTTAAGAACGCCCAAGAAGAACTGTTGCAGTGGCATGCTGAAAATGCTAAGGATAACAAAAAGATTATTCATGCAACAGAGAGATGTGCAGCTGGTATCATTCAAGCCATTGGTCACTTTAGTCTAGGTCCAAATTTGCCCCCCAGAGATGTTACAGATACTTCAGACTGCACGCTGGAAAATGCGAACCCTGGTCATAGTATAGTGGAGTTTTTCTTATTCTACGAGAAATGGCGACGTGCAGAAATTGAGAATTCAGAGATCTATCTAGCCGGTGTGAAAGCCAATTGCTGTGCATCTGCTACATATGTCCATCCTACTGGCAACGAGCAAAGTCTTCATAACTGCATAAATGCTCTGAGAGGCTGCTATGGAGACAAACAGGGAAAACATTATCGAGTTTGGGTAGATCAGGTTTTACCAACACAAATCGATTCAAAGACATGGCTAGTGAAGTTCGATATGTGGGTATTATCTGGTGAGGAACAATATGCAGCAAGGGGGACTGCTATATTTTCTTCGAAGGGTGAGAGTCCTTCAGATCAGCTCACTTGGATTCGTGGGCATCAGACATGGATCAGAGGATATGAACCAAAACAAGTTACACCATTTTTCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016757

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

425

Amino Acids

47.93

Weight (kDa)

5.99

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	9 - 259	1.4e-101	Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3	PF08282	100 - 232	2.5e-12	haloacid dehalogenase-like hydrolase
S6PP_C	PF08472	283 - 412	4.4e-48	Sucrose-6-phosphate phosphohydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51420 AT1G51420 AT1G51420 AT1G51420 AT2G35840 AT2G35840 AT2G35840 AT2G35840 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340
fragaria_vesca	FvH4_6g20950 FvH4_6g20950
malus_domestica	MD12G1045400.v1.1 MD14G1044300.v1.1
prunus_persica	Prupe.7G089300_v2.0.a1 Prupe.7G089300_v2.0.a1
pyrus_communis	pycom12g03920 pycom14g03750
rosa_chinensis	RchiOBHm_Chr3g0477361
rosa_laevigata	RLG00000023729
rosa_multiflora	Rmu_sc0006369.1_g000008
rosa_roxburghii	Rroxscaffold_6G00404250 Rroxscaffold_6G00404730 Rroxscaffold_7G00202730
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700
rosa_samantha	Rh3AG210200 Rh3BG243600 Rh3CG237500 Rh3DG237100
rosa_wichuraiana	Rw0G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	275
AccII	CGCG	1 cut(s)	260
AclWI	GGATC	3 cut(s)	12, 51, 1241
AcsI	RAATTY	3 cut(s)	557, 790, 910
AcuI	CTGAAG	5 cut(s)	341, 536, 660, 804, 1179
AdeI	CACNNNGTG	1 cut(s)	518
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	275, 1271
AflII	CTTAAG	1 cut(s)	350
AgsI	TTSAA	4 cut(s)	153, 451, 761, 1095
AjiI	CACGTC	1 cut(s)	896
AjnI	CCWGG	1 cut(s)	847
AluBI	AGCT	7 cut(s)	119, 355, 393, 536, 625, 749, 1204
AluI	AGCT	7 cut(s)	119, 355, 393, 536, 625, 749, 1204
Alw26I	GTCTC	2 cut(s)	93, 1026
AlwI	GGATC	3 cut(s)	12, 51, 1241
ApeKI	GCWGC	3 cut(s)	746, 1023, 1151
ApoI	RAATTY	3 cut(s)	557, 790, 910
AspS9I	GGNCC	1 cut(s)	785
AsuHPI	GGTGA	4 cut(s)	156, 614, 1148, 1196
AsuII	TTCGAA	1 cut(s)	1178
AvaII	GGWCC	1 cut(s)	785
BaeGI	GKGCMC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	986
BbvI	GCAGC	3 cut(s)	758, 1010, 1163
BccI	CCATC	3 cut(s)	256, 269, 978
BciT130I	CCWGG	1 cut(s)	849
BciVI	GTATCC	1 cut(s)	644
BclI	TGATCA	2 cut(s)	49, 64
BcoDI	GTCTC	2 cut(s)	93, 1026
BfaI	CTAG	3 cut(s)	782, 926, 1106
BfmI	CTRYAG	1 cut(s)	481
BfrI	CTTAAG	1 cut(s)	350
BfuI	GTATCC	1 cut(s)	644
BglII	AGATCT	1 cut(s)	918
BisI	GCNGC	3 cut(s)	747, 1024, 1152
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	3 cut(s)	748, 1025, 1153
Bme1390I	CCNGG	1 cut(s)	849
Bme18I	GGWCC	1 cut(s)	785
BmgBI	CACGTC	1 cut(s)	896
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	2 cut(s)	18, 267
BmrFI	CCNGG	1 cut(s)	849
BmsI	GCATC	3 cut(s)	607, 962, 1231
BpiI	GAAGAC	1 cut(s)	986
Bpu10I	CCTNAGC	1 cut(s)	705
Bpu1102I	GCTNAGC	1 cut(s)	621
Bpu14I	TTCGAA	1 cut(s)	1178
Bsa29I	ATCGAT	1 cut(s)	1089
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	847
BsaWI	WCCGGW	1 cut(s)	96
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 642, 672
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 1271
Bse118I	RCCGGY	1 cut(s)	929
Bse1I	ACTGG	2 cut(s)	160, 982
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	849
BseCI	ATCGAT	1 cut(s)	1089
BseDI	CCNNGG	1 cut(s)	847
BseGI	GGATG	3 cut(s)	472, 574, 970
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	275, 1271
BseMII	CTCAG	5 cut(s)	231, 431, 558, 612, 1007
BseNI	ACTGG	2 cut(s)	160, 982
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	3 cut(s)	758, 1010, 1163
BsgI	GTGCAG	3 cut(s)	765, 811, 918
Bsh1236I	CGCG	1 cut(s)	260
BshVI	ATCGAT	1 cut(s)	1089
BsiSI	CCGG	3 cut(s)	20, 97, 930
BslFI	GGGAC	2 cut(s)	585, 1174
BslI	CCNNNNNNNGG	2 cut(s)	275, 1271
BsmAI	GTCTC	2 cut(s)	93, 1026
BsmFI	GGGAC	2 cut(s)	585, 1174
Bsp119I	TTCGAA	1 cut(s)	1178
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	8 cut(s)	4, 43, 49, 64, 918, 1066, 1198, 1233
Bsp1720I	GCTNAGC	1 cut(s)	621
BspCNI	CTCAG	5 cut(s)	232, 430, 559, 613, 1008
BspDI	ATCGAT	1 cut(s)	1089
BspFNI	CGCG	1 cut(s)	260
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	18, 267
BspPI	GGATC	3 cut(s)	12, 51, 1241
BspT104I	TTCGAA	1 cut(s)	1178
BspTI	CTTAAG	1 cut(s)	350
BsrFI	RCCGGY	1 cut(s)	929
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	2 cut(s)	160, 982
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	1 cut(s)	847
BssMI	GATC	8 cut(s)	4, 43, 49, 64, 918, 1066, 1198, 1233
Bst2UI	CCWGG	1 cut(s)	849
Bst4CI	ACNGT	4 cut(s)	174, 254, 424, 681
Bst6I	CTCTTC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	174
BstBI	TTCGAA	1 cut(s)	1178
BstC8I	GCNNGC	2 cut(s)	693, 830
BstDEI	CTNAG	6 cut(s)	240, 417, 567, 621, 705, 1016
BstEII	GGTNACC	1 cut(s)	162
BstF5I	GGATG	3 cut(s)	472, 574, 970
BstFNI	CGCG	1 cut(s)	260
BstKTI	GATC	8 cut(s)	7, 46, 52, 67, 921, 1069, 1201, 1236
BstMAI	GTCTC	2 cut(s)	93, 1026
BstMBI	GATC	8 cut(s)	4, 43, 49, 64, 918, 1066, 1198, 1233
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstNI	CCWGG	1 cut(s)	849
BstNSI	RCATGY	1 cut(s)	695
BstPI	GGTNACC	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	847
BstSFI	CTRYAG	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	382
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	3 cut(s)	758, 1010, 1163
BstV2I	GAAGAC	1 cut(s)	986
BstX2I	RGATCY	2 cut(s)	43, 918
BstXI	CCANNNNNNTGG	1 cut(s)	977
BstYI	RGATCY	2 cut(s)	43, 918
Bsu15I	ATCGAT	1 cut(s)	1089
BsuI	GTATCC	1 cut(s)	644
BsuTUI	ATCGAT	1 cut(s)	1089
BtgZI	GCGATG	1 cut(s)	275
BtrI	CACGTC	1 cut(s)	896
BtsCI	GGATG	3 cut(s)	472, 574, 970
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	3 cut(s)	170, 429, 692
Cac8I	GCNNGC	2 cut(s)	693, 830
CciI	TCATGA	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	929
Cfr13I	GGNCC	1 cut(s)	785
ClaI	ATCGAT	1 cut(s)	1089
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	6 cut(s)	71, 655, 692, 728, 1101, 1230
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	6 cut(s)	240, 417, 567, 621, 705, 1016
DpnI	GATC	8 cut(s)	6, 45, 51, 66, 920, 1068, 1200, 1235
DpnII	GATC	8 cut(s)	4, 43, 49, 64, 918, 1066, 1198, 1233
DraIII	CACNNNGTG	1 cut(s)	518
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	785
Eco57I	CTGAAG	5 cut(s)	341, 536, 660, 804, 1179
Eco91I	GGTNACC	1 cut(s)	162
EcoO65I	GGTNACC	1 cut(s)	162
EcoRI	GAATTC	1 cut(s)	910
EcoRII	CCWGG	1 cut(s)	847
FaeI	CATG	6 cut(s)	74, 658, 695, 731, 1104, 1233
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	2 cut(s)	585, 1174
FatI	CATG	6 cut(s)	70, 654, 691, 727, 1100, 1229
FauNDI	CATATG	1 cut(s)	964
FbaI	TGATCA	2 cut(s)	49, 64
Fnu4HI	GCNGC	3 cut(s)	747, 1024, 1152
FokI	GGATG	3 cut(s)	479, 561, 957
Fsp4HI	GCNGC	3 cut(s)	747, 1024, 1152
FspBI	CTAG	3 cut(s)	782, 926, 1106
GluI	GCNGC	3 cut(s)	747, 1024, 1152
HapII	CCGG	3 cut(s)	20, 97, 930
Hin1II	CATG	6 cut(s)	74, 658, 695, 731, 1104, 1233
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	9 cut(s)	134, 208, 295, 329, 605, 651, 1091, 1189, 1213
HpaII	CCGG	3 cut(s)	20, 97, 930
HphI	GGTGA	4 cut(s)	156, 614, 1148, 1196
Hpy188III	TCNNGA	7 cut(s)	47, 71, 131, 212, 269, 344, 609
Hpy99I	CGWCG	1 cut(s)	897
HpyAV	CCTTC	3 cut(s)	153, 1174, 1203
HpyCH4III	ACNGT	4 cut(s)	174, 254, 424, 681
HpyCH4IV	ACGT	1 cut(s)	895
HpyCH4V	TGCA	9 cut(s)	542, 685, 731, 746, 828, 899, 953, 1005, 1151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpyF3I	CTNAG	6 cut(s)	240, 417, 567, 621, 705, 1016
HpySE526I	ACGT	1 cut(s)	895
Hsp92II	CATG	6 cut(s)	74, 658, 695, 731, 1104, 1233
Ksp22I	TGATCA	2 cut(s)	49, 64
Kzo9I	GATC	8 cut(s)	4, 43, 49, 64, 918, 1066, 1198, 1233
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	3 cut(s)	758, 1010, 1163
LweI	GCATC	3 cut(s)	607, 962, 1231
MaeI	CTAG	3 cut(s)	782, 926, 1106
MaeII	ACGT	1 cut(s)	895
MaeIII	GTNAC	8 cut(s)	128, 162, 254, 424, 602, 770, 808, 1258
MalI	GATC	8 cut(s)	6, 45, 51, 66, 920, 1068, 1200, 1235
MboI	GATC	8 cut(s)	4, 43, 49, 64, 918, 1066, 1198, 1233
MboII	GAAGA	5 cut(s)	83, 338, 686, 986, 1167
MfeI	CAATTG	1 cut(s)	943
MflI	RGATCY	2 cut(s)	43, 918
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	8 cut(s)	103, 121, 182, 557, 790, 903, 910, 943
MlyI	GAGTC	5 cut(s)	128, 202, 599, 660, 1198
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	8 cut(s)	180, 280, 436, 482, 562, 1013, 1132, 1232
MseI	TTAA	6 cut(s)	102, 351, 471, 561, 585, 660
MspA1I	CMGCKG	1 cut(s)	749
MspCI	CTTAAG	1 cut(s)	350
MspI	CCGG	3 cut(s)	20, 97, 930
MspR9I	CCNGG	1 cut(s)	849
MunI	CAATTG	1 cut(s)	943
MvaI	CCWGG	1 cut(s)	849
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	701
NdeI	CATATG	1 cut(s)	964
NdeII	GATC	8 cut(s)	4, 43, 49, 64, 918, 1066, 1198, 1233
NlaIII	CATG	6 cut(s)	74, 658, 695, 731, 1104, 1233
NlaIV	GGNNCC	2 cut(s)	18, 267
NmeAIII	GCCGAG	1 cut(s)	4
NmuCI	GTSAC	5 cut(s)	128, 162, 424, 602, 770
NspI	RCATGY	1 cut(s)	695
NspV	TTCGAA	1 cut(s)	1178
PaeI	GCATGC	1 cut(s)	695
PagI	TCATGA	1 cut(s)	70
PfeI	GAWTC	4 cut(s)	295, 329, 1091, 1213
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	748, 1025, 1153
PleI	GAGTC	5 cut(s)	128, 202, 599, 659, 1197
PpsI	GAGTC	5 cut(s)	128, 202, 599, 659, 1197
Psp6I	CCWGG	1 cut(s)	847
PspEI	GGTNACC	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	847
PspN4I	GGNNCC	2 cut(s)	18, 267
PspPI	GGNCC	1 cut(s)	785
PsuI	RGATCY	2 cut(s)	43, 918
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	6 cut(s)	102, 351, 471, 561, 585, 660
SatI	GCNGC	3 cut(s)	747, 1024, 1152
Sau3AI	GATC	8 cut(s)	4, 43, 49, 64, 918, 1066, 1198, 1233
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	5 cut(s)	128, 202, 599, 660, 1198
ScrFI	CCNGG	1 cut(s)	849
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	3 cut(s)	607, 962, 1231
SfcI	CTRYAG	1 cut(s)	481
SfuI	TTCGAA	1 cut(s)	1178
SinI	GGWCC	1 cut(s)	785
SmlI	CTYRAG	2 cut(s)	11, 350
SmoI	CTYRAG	2 cut(s)	11, 350
SphI	GCATGC	1 cut(s)	695
Sse9I	AATT	8 cut(s)	103, 121, 182, 557, 790, 903, 910, 943
SspMI	CTAG	3 cut(s)	782, 926, 1106
StyD4I	CCNGG	1 cut(s)	847
TaaI	ACNGT	4 cut(s)	174, 254, 424, 681
TaiI	ACGT	1 cut(s)	898
TaqI	TCGA	4 cut(s)	1054, 1089, 1116, 1178
TasI	AATT	8 cut(s)	103, 121, 182, 557, 790, 903, 910, 943
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	4 cut(s)	295, 329, 1091, 1213
Tru1I	TTAA	6 cut(s)	102, 351, 471, 561, 585, 660
Tru9I	TTAA	6 cut(s)	102, 351, 471, 561, 585, 660
TscAI	CASTG	3 cut(s)	177, 429, 692
TseFI	GTSAC	5 cut(s)	128, 162, 424, 602, 770
TseI	GCWGC	3 cut(s)	746, 1023, 1151
Tsp45I	GTSAC	5 cut(s)	128, 162, 424, 602, 770
TspDTI	ATGAA	3 cut(s)	716, 986, 1260
TspRI	CASTG	3 cut(s)	177, 429, 692
Van91I	CCANNNNNTGG	1 cut(s)	275
Vha464I	CTTAAG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	785
XapI	RAATTY	3 cut(s)	557, 790, 910
XceI	RCATGY	1 cut(s)	695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276
XspI	CTAG	3 cut(s)	782, 926, 1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.