Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002721

Physical Location & Seq

Genomic Coordinates Reverse (-)

50969762 .. 50976032

Gene Structure 6271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCAAACTGCACTGCAAACACAATTGTTTGTGGTGACTCTAGAAATGATGCCGAACTCTTCACTCTTTCTCAAGTCTATGGTGTTATGGAGTGGAGGTTGGTAATGCACAGGAGGAATGGTTACACTAGTATGCAGCAAAACAATGAGAAAGATTCTCGAAAACATGGAAGCTTCCGGTTAATTAAGCAAGGCCACCGACAAATAGTCGGTCCCTCCTTTCTAGCTCATCTCTCTCACTCTCCATTGAGATTAGTTCAAACTAGTTGCCACCGAGTTGACTCACCGGGAAGGCCTCGTCCTCCGGCCAAGCGCAGCTCACCATTCTTGTACCGCAAGCCTTCAACTTTAGGGCCAAACTCCATCGAACTCGCCACCCCCAACCGAAACTCTCCATTTCGGATTAACCTCAAGCCGATTGACTGCGACCCGGATCCGAACCGTCGACGAGGACGAGTCGGCCCGGGAAACCTCGGAGGAGCTGTCCAACGTGGCACTGGAGCCGTGGCTGTAGCGAGAGAAGCGGCTGAACCGGAGGAGAGCTCGAAACTGCGAAGGCTCGGTGGACATGCTGTGCGAGAGCGGATTGTGCGGCAACAATTGATGAAGTACAAGGGGACTCCCTTGTTACGACCTTGTGTTTGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016757

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

216

Amino Acids

24.08

Weight (kDa)

10.84

Isoelectric Point (pI)

57.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51420 AT1G51420 AT1G51420 AT1G51420 AT2G35840 AT2G35840 AT2G35840 AT2G35840 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340
fragaria_vesca	FvH4_6g20950 FvH4_6g20950
malus_domestica	MD12G1045400.v1.1 MD14G1044300.v1.1
prunus_persica	Prupe.7G089300_v2.0.a1 Prupe.7G089300_v2.0.a1
pyrus_communis	pycom12g03920 pycom14g03750
rosa_chinensis	RchiOBHm_Chr3g0477361
rosa_laevigata	RLG00000023729
rosa_multiflora	Rmu_sc0006369.1_g000008
rosa_roxburghii	Rroxscaffold_6G00404250 Rroxscaffold_6G00404730 Rroxscaffold_7G00202730
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700
rosa_samantha	Rh3AG210200 Rh3BG243600 Rh3CG237500 Rh3DG237100
rosa_wichuraiana	Rw0G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	583
AccI	GTMKAC	1 cut(s)	445
AciI	CCGC	4 cut(s)	334, 524, 583, 592
AclWI	GGATC	2 cut(s)	428, 441
AcoI	YGGCCR	1 cut(s)	306
AfaI	GTAC	2 cut(s)	332, 611
AgsI	TTSAA	2 cut(s)	260, 345
AhdI	GACNNNNNGTC	1 cut(s)	206
AhlI	ACTAGT	2 cut(s)	128, 263
AluBI	AGCT	5 cut(s)	174, 227, 318, 482, 543
AluI	AGCT	5 cut(s)	174, 227, 318, 482, 543
Alw21I	GWGCWC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	428, 441
Ama87I	CYCGRG	1 cut(s)	463
AoxI	GGCC	5 cut(s)	193, 293, 306, 353, 460
ApeKI	GCWGC	2 cut(s)	136, 315
ArsI	GACNNNNNNTTYG	3 cut(s)	196, 228, 624
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	3 cut(s)	212, 353, 461
AsuC2I	CCSGG	4 cut(s)	288, 431, 464, 465
AsuHPI	GGTGA	3 cut(s)	47, 276, 312
AvaI	CYCGRG	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	545
Bbv12I	GWGCWC	1 cut(s)	545
BbvI	GCAGC	2 cut(s)	148, 327
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	1 cut(s)	488
BcnI	CCSGG	4 cut(s)	288, 431, 464, 465
BcuI	ACTAGT	2 cut(s)	128, 263
BfaI	CTAG	4 cut(s)	42, 129, 224, 264
BfmI	CTRYAG	1 cut(s)	510
BisI	GCNGC	4 cut(s)	137, 316, 525, 593
BlsI	GCNGC	4 cut(s)	138, 317, 526, 594
Bme1390I	CCNGG	4 cut(s)	288, 431, 464, 465
Bme18I	GGWCC	1 cut(s)	212
BmeRI	GACNNNNNGTC	1 cut(s)	206
BmeT110I	CYCGRG	1 cut(s)	463
BmgT120I	GGNCC	3 cut(s)	212, 353, 461
BmiI	GGNNCC	3 cut(s)	214, 435, 502
BmrFI	CCNGG	4 cut(s)	288, 431, 464, 465
BmsI	GCATC	1 cut(s)	40
BplI	GAGNNNNNCTC	2 cut(s)	527, 559
BpmI	CTGGAG	1 cut(s)	519
BpuEI	CTTGAG	2 cut(s)	57, 395
BpuMI	CCSGG	4 cut(s)	288, 431, 464, 465
BsaJI	CCNNGG	3 cut(s)	463, 472, 504
BsaWI	WCCGGW	2 cut(s)	177, 532
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 106, 113, 136, 468, 498
Bse1I	ACTGG	1 cut(s)	502
BseDI	CCNNGG	3 cut(s)	463, 472, 504
BseNI	ACTGG	1 cut(s)	502
BseRI	GAGGAG	2 cut(s)	492, 551
BseXI	GCAGC	2 cut(s)	148, 327
BshFI	GGCC	5 cut(s)	195, 295, 308, 355, 462
BsiHKAI	GWGCWC	1 cut(s)	545
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	6 cut(s)	178, 287, 305, 431, 464, 533
BslFI	GGGAC	2 cut(s)	198, 631
BsmFI	GGGAC	2 cut(s)	198, 631
BsnI	GGCC	5 cut(s)	195, 295, 308, 355, 462
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	4 cut(s)	334, 524, 583, 592
BspANI	GGCC	5 cut(s)	195, 295, 308, 355, 462
BspLI	GGNNCC	3 cut(s)	214, 435, 502
BspPI	GGATC	2 cut(s)	428, 441
BsrBI	CCGCTC	1 cut(s)	583
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	3 cut(s)	463, 472, 504
BssMI	GATC	1 cut(s)	433
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	338
BstDSI	CCRYGG	1 cut(s)	504
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	2 cut(s)	521, 589
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	4 cut(s)	286, 429, 462, 463
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	148, 327
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	5 cut(s)	195, 295, 308, 355, 462
BtgI	CCRYGG	1 cut(s)	504
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 495
Cac8I	GCNNGC	1 cut(s)	338
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	3 cut(s)	212, 353, 461
Cfr9I	CCCGGG	1 cut(s)	463
Csp6I	GTAC	2 cut(s)	331, 610
CviAII	CATG	2 cut(s)	167, 569
CviQI	GTAC	2 cut(s)	331, 610
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
DriI	GACNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	65
Eam1105I	GACNNNNNGTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	543
Eco147I	AGGCCT	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	463
EcoICRI	GAGCTC	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	545
FaeI	CATG	2 cut(s)	170, 572
FaiI	YATR	5 cut(s)	81, 89, 134, 168, 570
FaqI	GGGAC	2 cut(s)	198, 631
FatI	CATG	2 cut(s)	166, 568
FblI	GTMKAC	1 cut(s)	445
Fnu4HI	GCNGC	4 cut(s)	137, 316, 525, 593
FriOI	GRGCYC	1 cut(s)	545
Fsp4HI	GCNGC	4 cut(s)	137, 316, 525, 593
FspBI	CTAG	4 cut(s)	42, 129, 224, 264
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	4 cut(s)	137, 316, 525, 593
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	5 cut(s)	195, 295, 308, 355, 462
HapII	CCGG	6 cut(s)	178, 287, 305, 431, 464, 533
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	2 cut(s)	170, 572
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HincII	GTYRAC	2 cut(s)	280, 446
HindII	GTYRAC	2 cut(s)	280, 446
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	5 cut(s)	38, 155, 281, 456, 619
HpaII	CCGG	6 cut(s)	178, 287, 305, 431, 464, 533
HphI	GGTGA	3 cut(s)	47, 276, 312
Hpy166II	GTNNAC	3 cut(s)	280, 446, 566
Hpy188I	TCNGA	3 cut(s)	402, 438, 476
Hpy188III	TCNNGA	3 cut(s)	42, 159, 648
Hpy8I	GTNNAC	3 cut(s)	280, 446, 566
Hpy99I	CGWCG	2 cut(s)	447, 450
HpyAV	CCTTC	3 cut(s)	285, 351, 549
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	490
HpyCH4V	TGCA	4 cut(s)	12, 17, 109, 136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	521, 589
HpySE526I	ACGT	1 cut(s)	490
Hsp92II	CATG	2 cut(s)	170, 572
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	2 cut(s)	479, 500
LpnPI	CCDG	8 cut(s)	97, 191, 300, 318, 444, 477, 483, 546
Lsp1109I	GCAGC	2 cut(s)	148, 327
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	4 cut(s)	42, 129, 224, 264
MaeII	ACGT	1 cut(s)	490
MaeIII	GTNAC	3 cut(s)	35, 122, 627
MalI	GATC	1 cut(s)	435
MbiI	CCGCTC	1 cut(s)	583
MboI	GATC	1 cut(s)	433
MboII	GAAGA	1 cut(s)	52
MfeI	CAATTG	2 cut(s)	24, 599
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	545
MluCI	AATT	3 cut(s)	24, 183, 599
MlyI	GAGTC	4 cut(s)	32, 275, 465, 613
MmeI	TCCRAC	1 cut(s)	511
MseI	TTAA	3 cut(s)	182, 186, 405
MslI	CAYNNNNRTG	1 cut(s)	131
MspI	CCGG	6 cut(s)	178, 287, 305, 431, 464, 533
MspR9I	CCNGG	4 cut(s)	288, 431, 464, 465
MunI	CAATTG	2 cut(s)	24, 599
MwoI	GCNNNNNNNGC	2 cut(s)	521, 589
NciI	CCSGG	4 cut(s)	288, 431, 464, 465
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	2 cut(s)	170, 572
NlaIV	GGNNCC	3 cut(s)	214, 435, 502
NmuCI	GTSAC	1 cut(s)	35
NspI	RCATGY	1 cut(s)	572
PacI	TTAATTAA	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	4 cut(s)	138, 317, 526, 594
PleI	GAGTC	4 cut(s)	32, 275, 464, 613
PpsI	GAGTC	4 cut(s)	32, 275, 464, 613
Psp124BI	GAGCTC	1 cut(s)	545
PspN4I	GGNNCC	3 cut(s)	214, 435, 502
PspPI	GGNCC	3 cut(s)	212, 353, 461
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	2 cut(s)	332, 611
RsaNI	GTAC	2 cut(s)	331, 610
RseI	CAYNNNNRTG	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	545
SalI	GTCGAC	1 cut(s)	444
SaqAI	TTAA	3 cut(s)	182, 186, 405
SatI	GCNGC	4 cut(s)	137, 316, 525, 593
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	3 cut(s)	212, 353, 461
SchI	GAGTC	4 cut(s)	32, 275, 465, 613
ScrFI	CCNGG	4 cut(s)	288, 431, 464, 465
SduI	GDGCHC	1 cut(s)	545
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	1 cut(s)	510
SgrDI	CGTCGACG	1 cut(s)	444
SinI	GGWCC	1 cut(s)	212
SmaI	CCCGGG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	72, 410
SmoI	CTYRAG	2 cut(s)	72, 410
SpeI	ACTAGT	2 cut(s)	128, 263
Sse9I	AATT	3 cut(s)	24, 183, 599
SseBI	AGGCCT	1 cut(s)	295
SsiI	CCGC	4 cut(s)	334, 524, 583, 592
SspMI	CTAG	4 cut(s)	42, 129, 224, 264
SstI	GAGCTC	1 cut(s)	545
StuI	AGGCCT	1 cut(s)	295
StyD4I	CCNGG	4 cut(s)	286, 429, 462, 463
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	1 cut(s)	493
TaqI	TCGA	4 cut(s)	160, 366, 445, 545
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	3 cut(s)	24, 183, 599
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	2 cut(s)	527, 595
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	3 cut(s)	182, 186, 405
Tru9I	TTAA	3 cut(s)	182, 186, 405
TscAI	CASTG	2 cut(s)	19, 502
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	2 cut(s)	136, 315
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	620
TspMI	CCCGGG	1 cut(s)	463
TspRI	CASTG	2 cut(s)	19, 502
VpaK11BI	GGWCC	1 cut(s)	212
XbaI	TCTAGA	1 cut(s)	41
XceI	RCATGY	1 cut(s)	572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XmaI	CCCGGG	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	445
XspI	CTAG	4 cut(s)	42, 129, 224, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.