Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002721

Physical Location & Seq

Genomic Coordinates Reverse (-)

21100670 .. 21105974

Gene Structure 5305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG210200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGATCGGCTCAAGGCTCCGGCTCGGCTAATGATAGTTTCGGATCTTGATCATACAATGGTTGATCATCATGACAAGGAGAATCTTTCTCTTCTCCGGTTTAATTCTCTTTGGGAAGCCAATTATCGTCACGACTCTCTGCTGGTCTTTTCAACTGGAAGGTCACCGACACTGTACAAAGAATTGAGGAAAGAGAAACCTATGCTGACTCCGGATATAACAATAATGTCTGTGGGAACTGAGATAACTTACGGTAATGCGATGGTTCCAGATGATGGTTGGGTTGAGGTTCTGAATCAGAAGTGGGATAAGAACATTGTCAAAGAGGAATCAAGCAAGTTTCCTGAACTTAAGCTTCAGGCAGAAACAGAGCAACGGGCACACAAGGTTAGCTTTTATGTTGAGAAAGACAAGGCTCAGACAGTGACAAAGGCTCTTTCAGAGGCTTTGAAACAGCGTGGGTTGGATGTTAAGATAATCTATAGTGGAGGAATAGATTTGGATATATTGCCACAAGGTGCTGGAAAAGGACAAGCTCTTGCATATTTGCTTCAGAAATTTAAGACTGAGGGACATCCACCTGTTAATACTCTTGTTTGTGGTGACTCTGGAAATGATGCTGAGCTTTTTAGTATCCCTGAAGTATATGGAGTCATGGTTAAGAACGCCCAAGAAGAACTGTTGCAGTGGCATGCTGAAAATGCTAAGGATAACAAAAAGATTATTCATGCAACAGAGAGATGTGCAGCTGGTATCATTCAAGCCATTGGTCACTTTAGTCTAGGTCCAAATTTGCCCCCCAGAGATGTTACAGATACTTCAGACTGTACGCTGGAAAATGCGAACCCTGGTCATAGTATAGTGGAGTTTTTCTTATTCTATGAGAAATGGCGACGTGCAGAAATTGAGAATTCAGAGATCTATCTAGCCGGTGTGAAAGCCAATTGTTGTCCATCTGCTACATATGTCCATCCTACTGGCAACGAGCAAAGTCTTCATAACTGCATAAATGCTCTGAGAGGCTGCTATGGAGACAAACAGGGAAAACATTATCGAGTTTGGGTAGATCAGGTTTTACCAACACAAATCGATTCAAAGACGTGGCTAGTGAAGTTCGATATGTGGGTATTATCTGGTGGGTCTCTCTCTCTCATCCTTCTGTTTGTGCAACTCAACATGTTTTTTTACTTCATTCATCTTGATGATGTGTTGGTTTTAACTTTTAACGAGATTACTATCTTGCAATTCTGGCTCCTCTGGGTACTCGTAGAGAAACTGAAAAAATATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016757

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

430

Amino Acids

48.96

Weight (kDa)

5.89

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	9 - 259	1.5e-101	Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3	PF08282	100 - 232	2.6e-12	haloacid dehalogenase-like hydrolase
S6PP_C	PF08472	283 - 391	2.2e-41	Sucrose-6-phosphate phosphohydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51420 AT1G51420 AT1G51420 AT1G51420 AT2G35840 AT2G35840 AT2G35840 AT2G35840 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340
fragaria_vesca	FvH4_6g20950 FvH4_6g20950
malus_domestica	MD12G1045400.v1.1 MD14G1044300.v1.1
prunus_persica	Prupe.7G089300_v2.0.a1 Prupe.7G089300_v2.0.a1
pyrus_communis	pycom12g03920 pycom14g03750
rosa_chinensis	RchiOBHm_Chr3g0477361
rosa_laevigata	RLG00000023729
rosa_multiflora	Rmu_sc0006369.1_g000008
rosa_roxburghii	Rroxscaffold_6G00404250 Rroxscaffold_6G00404730 Rroxscaffold_7G00202730
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700
rosa_samantha	Rh3AG210200 Rh3BG243600 Rh3CG237500 Rh3DG237100
rosa_wichuraiana	Rw0G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	275
AccIII	TCCGGA	1 cut(s)	211
AclWI	GGATC	2 cut(s)	12, 51
AcsI	RAATTY	3 cut(s)	557, 790, 910
AcuI	CTGAAG	4 cut(s)	341, 536, 660, 804
AdeI	CACNNNGTG	1 cut(s)	518
AfaI	GTAC	3 cut(s)	176, 829, 1263
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflII	CTTAAG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	1176
AgsI	TTSAA	4 cut(s)	153, 451, 761, 1095
AjiI	CACGTC	2 cut(s)	896, 1101
AjnI	CCWGG	1 cut(s)	847
AluBI	AGCT	5 cut(s)	355, 393, 536, 625, 749
AluI	AGCT	5 cut(s)	355, 393, 536, 625, 749
Alw26I	GTCTC	2 cut(s)	1026, 1146
AlwI	GGATC	2 cut(s)	12, 51
Aor13HI	TCCGGA	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	746, 1023
ApoI	RAATTY	3 cut(s)	557, 790, 910
AspS9I	GGNCC	1 cut(s)	785
AsuHPI	GGTGA	2 cut(s)	156, 614
AvaII	GGWCC	1 cut(s)	785
BaeGI	GKGCMC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	986
BbvI	GCAGC	2 cut(s)	758, 1010
BccI	CCATC	4 cut(s)	256, 269, 961, 978
BciT130I	CCWGG	1 cut(s)	849
BciVI	GTATCC	1 cut(s)	644
BclI	TGATCA	2 cut(s)	49, 64
BcoDI	GTCTC	2 cut(s)	1026, 1146
BfaI	CTAG	3 cut(s)	782, 926, 1106
BfmI	CTRYAG	1 cut(s)	481
BfrI	CTTAAG	1 cut(s)	350
BfuI	GTATCC	1 cut(s)	644
BglII	AGATCT	1 cut(s)	918
BisI	GCNGC	2 cut(s)	747, 1024
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	2 cut(s)	748, 1025
Bme1390I	CCNGG	1 cut(s)	849
Bme18I	GGWCC	1 cut(s)	785
BmgBI	CACGTC	2 cut(s)	896, 1101
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	3 cut(s)	18, 267, 1253
BmrFI	CCNGG	1 cut(s)	849
BmsI	GCATC	1 cut(s)	607
BpiI	GAAGAC	1 cut(s)	986
Bpu10I	CCTNAGC	1 cut(s)	705
Bpu1102I	GCTNAGC	1 cut(s)	621
Bsa29I	ATCGAT	1 cut(s)	1089
BsaBI	GATNNNNATC	2 cut(s)	48, 1235
BsaI	GGTCTC	1 cut(s)	1146
BsaJI	CCNNGG	1 cut(s)	847
BsaWI	WCCGGW	2 cut(s)	96, 211
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse118I	RCCGGY	1 cut(s)	929
Bse1I	ACTGG	2 cut(s)	160, 982
Bse8I	GATNNNNATC	2 cut(s)	48, 1235
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	849
BseCI	ATCGAT	1 cut(s)	1089
BseDI	CCNNGG	1 cut(s)	847
BseGI	GGATG	4 cut(s)	472, 574, 970, 1152
BseJI	GATNNNNATC	2 cut(s)	48, 1235
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	5 cut(s)	231, 431, 558, 612, 1007
BseNI	ACTGG	2 cut(s)	160, 982
BseRI	GAGGAG	1 cut(s)	1244
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	758, 1010
BsgI	GTGCAG	2 cut(s)	765, 918
BshVI	ATCGAT	1 cut(s)	1089
BsiSI	CCGG	4 cut(s)	20, 97, 212, 930
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	2 cut(s)	1026, 1146
BsmFI	GGGAC	1 cut(s)	585
Bso31I	GGTCTC	1 cut(s)	1146
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp13I	TCCGGA	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	6 cut(s)	4, 43, 49, 64, 918, 1066
Bsp1720I	GCTNAGC	1 cut(s)	621
BspCNI	CTCAG	5 cut(s)	232, 430, 559, 613, 1008
BspDI	ATCGAT	1 cut(s)	1089
BspEI	TCCGGA	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	3 cut(s)	18, 267, 1253
BspPI	GGATC	2 cut(s)	12, 51
BspTI	CTTAAG	1 cut(s)	350
BspTNI	GGTCTC	1 cut(s)	1146
BsrFI	RCCGGY	1 cut(s)	929
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	2 cut(s)	160, 982
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	1 cut(s)	847
BssMI	GATC	6 cut(s)	4, 43, 49, 64, 918, 1066
Bst2UI	CCWGG	1 cut(s)	849
Bst4CI	ACNGT	5 cut(s)	174, 254, 424, 681, 827
Bst6I	CTCTTC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	6 cut(s)	240, 417, 567, 621, 705, 1016
BstEII	GGTNACC	1 cut(s)	162
BstF5I	GGATG	4 cut(s)	472, 574, 970, 1152
BstKTI	GATC	6 cut(s)	7, 46, 52, 67, 921, 1069
BstMAI	GTCTC	2 cut(s)	1026, 1146
BstMBI	GATC	6 cut(s)	4, 43, 49, 64, 918, 1066
BstMWI	GCNNNNNNNGC	2 cut(s)	701, 1249
BstNI	CCWGG	1 cut(s)	849
BstNSI	RCATGY	2 cut(s)	695, 1180
BstPI	GGTNACC	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	847
BstSFI	CTRYAG	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	758, 1010
BstV2I	GAAGAC	1 cut(s)	986
BstX2I	RGATCY	2 cut(s)	43, 918
BstXI	CCANNNNNNTGG	1 cut(s)	977
BstYI	RGATCY	2 cut(s)	43, 918
Bsu15I	ATCGAT	1 cut(s)	1089
BsuI	GTATCC	1 cut(s)	644
BsuTUI	ATCGAT	1 cut(s)	1089
BtgZI	GCGATG	1 cut(s)	275
BtrI	CACGTC	2 cut(s)	896, 1101
BtsCI	GGATG	4 cut(s)	472, 574, 970, 1152
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	3 cut(s)	170, 429, 692
Cac8I	GCNNGC	1 cut(s)	693
CciI	TCATGA	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	929
Cfr13I	GGNCC	1 cut(s)	785
ClaI	ATCGAT	1 cut(s)	1089
Csp6I	GTAC	3 cut(s)	175, 828, 1262
CviAII	CATG	5 cut(s)	71, 655, 692, 728, 1177
CviQI	GTAC	3 cut(s)	175, 828, 1262
DdeI	CTNAG	6 cut(s)	240, 417, 567, 621, 705, 1016
DpnI	GATC	6 cut(s)	6, 45, 51, 66, 920, 1068
DpnII	GATC	6 cut(s)	4, 43, 49, 64, 918, 1066
DraIII	CACNNNGTG	1 cut(s)	518
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	1146
Eco47I	GGWCC	1 cut(s)	785
Eco57I	CTGAAG	4 cut(s)	341, 536, 660, 804
Eco91I	GGTNACC	1 cut(s)	162
EcoO65I	GGTNACC	1 cut(s)	162
EcoRI	GAATTC	1 cut(s)	910
EcoRII	CCWGG	1 cut(s)	847
FaeI	CATG	5 cut(s)	74, 658, 695, 731, 1180
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	5 cut(s)	70, 654, 691, 727, 1176
FauNDI	CATATG	1 cut(s)	964
FbaI	TGATCA	2 cut(s)	49, 64
Fnu4HI	GCNGC	2 cut(s)	747, 1024
FokI	GGATG	4 cut(s)	479, 561, 957, 1139
Fsp4HI	GCNGC	2 cut(s)	747, 1024
FspBI	CTAG	3 cut(s)	782, 926, 1106
GluI	GCNGC	2 cut(s)	747, 1024
HapII	CCGG	4 cut(s)	20, 97, 212, 930
Hin1II	CATG	5 cut(s)	74, 658, 695, 731, 1180
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	8 cut(s)	82, 134, 208, 295, 329, 605, 651, 1091
HpaII	CCGG	4 cut(s)	20, 97, 212, 930
HphI	GGTGA	2 cut(s)	156, 614
Hpy188I	TCNGA	9 cut(s)	43, 294, 300, 420, 442, 555, 823, 916, 1017
Hpy188III	TCNNGA	8 cut(s)	47, 71, 131, 212, 269, 344, 609, 1199
Hpy99I	CGWCG	1 cut(s)	897
HpyAV	CCTTC	2 cut(s)	153, 1166
HpyCH4III	ACNGT	5 cut(s)	174, 254, 424, 681, 827
HpyCH4IV	ACGT	2 cut(s)	895, 1100
HpyCH4V	TGCA	8 cut(s)	542, 685, 731, 746, 899, 1005, 1168, 1243
HpyF10VI	GCNNNNNNNGC	2 cut(s)	701, 1249
HpyF3I	CTNAG	6 cut(s)	240, 417, 567, 621, 705, 1016
HpySE526I	ACGT	2 cut(s)	895, 1100
Hsp92II	CATG	5 cut(s)	74, 658, 695, 731, 1180
Kpn2I	TCCGGA	1 cut(s)	211
Ksp22I	TGATCA	2 cut(s)	49, 64
Kzo9I	GATC	6 cut(s)	4, 43, 49, 64, 918, 1066
LmnI	GCTCC	2 cut(s)	22, 1257
Lsp1109I	GCAGC	2 cut(s)	758, 1010
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	3 cut(s)	782, 926, 1106
MaeII	ACGT	2 cut(s)	895, 1100
MaeIII	GTNAC	6 cut(s)	128, 162, 424, 602, 770, 808
MalI	GATC	6 cut(s)	6, 45, 51, 66, 920, 1068
MboI	GATC	6 cut(s)	4, 43, 49, 64, 918, 1066
MboII	GAAGA	3 cut(s)	83, 686, 986
MfeI	CAATTG	1 cut(s)	943
MflI	RGATCY	2 cut(s)	43, 918
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	9 cut(s)	103, 121, 182, 557, 790, 903, 910, 943, 1244
MlyI	GAGTC	4 cut(s)	128, 202, 599, 660
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	8 cut(s)	180, 280, 319, 436, 482, 562, 1013, 1265
MroI	TCCGGA	1 cut(s)	211
MseI	TTAA	8 cut(s)	102, 351, 471, 561, 585, 660, 1217, 1224
MslI	CAYNNNNRTG	1 cut(s)	1200
MspA1I	CMGCKG	1 cut(s)	749
MspCI	CTTAAG	1 cut(s)	350
MspI	CCGG	4 cut(s)	20, 97, 212, 930
MspR9I	CCNGG	1 cut(s)	849
MunI	CAATTG	1 cut(s)	943
MvaI	CCWGG	1 cut(s)	849
MwoI	GCNNNNNNNGC	2 cut(s)	701, 1249
NdeI	CATATG	1 cut(s)	964
NdeII	GATC	6 cut(s)	4, 43, 49, 64, 918, 1066
NlaIII	CATG	5 cut(s)	74, 658, 695, 731, 1180
NlaIV	GGNNCC	3 cut(s)	18, 267, 1253
NmeAIII	GCCGAG	1 cut(s)	4
NmuCI	GTSAC	5 cut(s)	128, 162, 424, 602, 770
NspI	RCATGY	2 cut(s)	695, 1180
PaeI	GCATGC	1 cut(s)	695
PagI	TCATGA	1 cut(s)	70
PciI	ACATGT	1 cut(s)	1176
PfeI	GAWTC	4 cut(s)	82, 295, 329, 1091
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	748, 1025
PleI	GAGTC	4 cut(s)	128, 202, 599, 659
PpsI	GAGTC	4 cut(s)	128, 202, 599, 659
PscI	ACATGT	1 cut(s)	1176
Psp6I	CCWGG	1 cut(s)	847
PspEI	GGTNACC	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	847
PspN4I	GGNNCC	3 cut(s)	18, 267, 1253
PspPI	GGNCC	1 cut(s)	785
PsuI	RGATCY	2 cut(s)	43, 918
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	3 cut(s)	176, 829, 1263
RsaNI	GTAC	3 cut(s)	175, 828, 1262
RseI	CAYNNNNRTG	1 cut(s)	1200
SaqAI	TTAA	8 cut(s)	102, 351, 471, 561, 585, 660, 1217, 1224
SatI	GCNGC	2 cut(s)	747, 1024
Sau3AI	GATC	6 cut(s)	4, 43, 49, 64, 918, 1066
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	4 cut(s)	128, 202, 599, 660
ScrFI	CCNGG	1 cut(s)	849
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	1 cut(s)	607
SfcI	CTRYAG	1 cut(s)	481
SinI	GGWCC	1 cut(s)	785
SmiMI	CAYNNNNRTG	1 cut(s)	1200
SmlI	CTYRAG	2 cut(s)	11, 350
SmoI	CTYRAG	2 cut(s)	11, 350
SphI	GCATGC	1 cut(s)	695
Sse9I	AATT	9 cut(s)	103, 121, 182, 557, 790, 903, 910, 943, 1244
SspI	AATATT	1 cut(s)	1286
SspMI	CTAG	3 cut(s)	782, 926, 1106
StyD4I	CCNGG	1 cut(s)	847
TaaI	ACNGT	5 cut(s)	174, 254, 424, 681, 827
TaiI	ACGT	2 cut(s)	898, 1103
TaqI	TCGA	3 cut(s)	1054, 1089, 1116
TasI	AATT	9 cut(s)	103, 121, 182, 557, 790, 903, 910, 943, 1244
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	4 cut(s)	82, 295, 329, 1091
Tru1I	TTAA	8 cut(s)	102, 351, 471, 561, 585, 660, 1217, 1224
Tru9I	TTAA	8 cut(s)	102, 351, 471, 561, 585, 660, 1217, 1224
TscAI	CASTG	3 cut(s)	177, 429, 692
TseFI	GTSAC	5 cut(s)	128, 162, 424, 602, 770
TseI	GCWGC	2 cut(s)	746, 1023
Tsp45I	GTSAC	5 cut(s)	128, 162, 424, 602, 770
TspDTI	ATGAA	4 cut(s)	716, 986, 1180, 1184
TspRI	CASTG	3 cut(s)	177, 429, 692
Van91I	CCANNNNNTGG	1 cut(s)	275
Vha464I	CTTAAG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	785
XapI	RAATTY	3 cut(s)	557, 790, 910
XceI	RCATGY	2 cut(s)	695, 1180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276
XspI	CTAG	3 cut(s)	782, 926, 1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.