Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002721

Physical Location & Seq

Genomic Coordinates Forward (+)

27231915 .. 27236163

Gene Structure 4249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00404730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGATCGGCTCAAGGCTCCGGCTCGGCTAATGATAGTTTCGGATCTTGATCATACAATGGTTGATCATCATGACAAGGAGAACCTGTCTCTTCTCCGGTTTAATTCTCTGTGGGAAGCTAATTATCGTCACGACTCTCTGCTTGTCTTTTCAACTGGAAGGTCACCGACACTGTACAAAGAATTGAGGAAAGAGAAACCTATGCTGACTCCTGATATAACAATAATGTCTGTGGGAACTGAGATAACTTACGGTAACGCGATGGTTCCAGATGATGGTTGGGTTGAGGTTCTGAATCAGAAGTGGGATAAGAACATAGTCAAAGAAGAATCAAGCAAGTTTCCTGAACTTAAGCTTCAGGCAGAAACAGAGCAACGGGCACACAAGGTTAGCTTTTATGTTGAGAAAGACAAGGCTCAGACAGTGACAAAGGCTCTTTCAGAGGCTTTGAAACAGCGTGGGTTGGATGTTAAGATAATCTATAGTGGAGGAATAGATTTGGATATATTACCACAAGGTGCTGGAAAAGGACAAGCTCTTGCATATTTGCTTCAGAAATTTAAGACTGAGGGACATCCACCTGTTAATACTCTTGTTTGTGGTGACTCTGGAAATGATGCTGAGCTTTTTAGTATCCCTGAAGTATATGGAGTCATGGTTAAGAACGCCCAAGAAGAACTGTTGCAGTGGCATGCTGAAAATGCTAAGGATAACAAAAAGATTATTCATGCAACAGAGAGATGTGCAGCTGGTATCATTCAAGCCATTGGTCACTTTAGTCTAGGTCCAAATTTGCCCCCAGAGATGTTACAGATACTTCAGACTGCACGCTGGAAAATGCGAACCCTGGTCATAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016757

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

286

Amino Acids

32.22

Weight (kDa)

6.32

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	9 - 259	4e-102	Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3	PF08282	100 - 233	1e-12	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51420 AT1G51420 AT1G51420 AT1G51420 AT2G35840 AT2G35840 AT2G35840 AT2G35840 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340
fragaria_vesca	FvH4_6g20950 FvH4_6g20950
malus_domestica	MD12G1045400.v1.1 MD14G1044300.v1.1
prunus_persica	Prupe.7G089300_v2.0.a1 Prupe.7G089300_v2.0.a1
pyrus_communis	pycom12g03920 pycom14g03750
rosa_chinensis	RchiOBHm_Chr3g0477361
rosa_laevigata	RLG00000023729
rosa_multiflora	Rmu_sc0006369.1_g000008
rosa_roxburghii	Rroxscaffold_6G00404250 Rroxscaffold_6G00404730 Rroxscaffold_7G00202730
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700
rosa_samantha	Rh3AG210200 Rh3BG243600 Rh3CG237500 Rh3DG237100
rosa_wichuraiana	Rw0G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	275
AccII	CGCG	1 cut(s)	260
AclWI	GGATC	2 cut(s)	12, 51
AcsI	RAATTY	2 cut(s)	557, 790
AcuI	CTGAAG	4 cut(s)	341, 536, 660, 803
AdeI	CACNNNGTG	1 cut(s)	518
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflII	CTTAAG	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	153, 451, 761
AjnI	CCWGG	1 cut(s)	846
AluBI	AGCT	6 cut(s)	119, 355, 393, 536, 625, 749
AluI	AGCT	6 cut(s)	119, 355, 393, 536, 625, 749
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	2 cut(s)	12, 51
ApeKI	GCWGC	1 cut(s)	746
ApoI	RAATTY	2 cut(s)	557, 790
AspS9I	GGNCC	1 cut(s)	785
AsuHPI	GGTGA	2 cut(s)	156, 614
AvaII	GGWCC	1 cut(s)	785
BaeGI	GKGCMC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	758
BccI	CCATC	2 cut(s)	256, 269
BciT130I	CCWGG	1 cut(s)	848
BciVI	GTATCC	1 cut(s)	644
BclI	TGATCA	2 cut(s)	49, 64
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	782
BfmI	CTRYAG	1 cut(s)	481
BfrI	CTTAAG	1 cut(s)	350
BfuI	GTATCC	1 cut(s)	644
BisI	GCNGC	1 cut(s)	747
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	1 cut(s)	748
Bme1390I	CCNGG	1 cut(s)	848
Bme18I	GGWCC	1 cut(s)	785
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	2 cut(s)	18, 267
BmrFI	CCNGG	1 cut(s)	848
BmsI	GCATC	1 cut(s)	607
Bpu10I	CCTNAGC	1 cut(s)	705
Bpu1102I	GCTNAGC	1 cut(s)	621
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	846
BsaWI	WCCGGW	1 cut(s)	96
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 642, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	160
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	848
BseDI	CCNNGG	1 cut(s)	846
BseGI	GGATG	2 cut(s)	472, 574
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	4 cut(s)	231, 431, 558, 612
BseNI	ACTGG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	758
BsgI	GTGCAG	2 cut(s)	765, 810
Bsh1236I	CGCG	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	20, 97
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	585
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	4 cut(s)	4, 43, 49, 64
Bsp1720I	GCTNAGC	1 cut(s)	621
BspCNI	CTCAG	4 cut(s)	232, 430, 559, 613
BspFNI	CGCG	1 cut(s)	260
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	18, 267
BspPI	GGATC	2 cut(s)	12, 51
BspTI	CTTAAG	1 cut(s)	350
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	846
BssMI	GATC	4 cut(s)	4, 43, 49, 64
Bst2UI	CCWGG	1 cut(s)	848
Bst4CI	ACNGT	4 cut(s)	174, 254, 424, 681
Bst6I	CTCTTC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	693, 829
BstDEI	CTNAG	5 cut(s)	240, 417, 567, 621, 705
BstEII	GGTNACC	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	472, 574
BstFNI	CGCG	1 cut(s)	260
BstKTI	GATC	4 cut(s)	7, 46, 52, 67
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	4 cut(s)	4, 43, 49, 64
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstNI	CCWGG	1 cut(s)	848
BstNSI	RCATGY	1 cut(s)	695
BstPI	GGTNACC	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	846
BstSFI	CTRYAG	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	382
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	758
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuI	GTATCC	1 cut(s)	644
BtgZI	GCGATG	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	472, 574
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	3 cut(s)	170, 429, 692
Cac8I	GCNNGC	2 cut(s)	693, 829
CciI	TCATGA	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	785
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	4 cut(s)	71, 655, 692, 728
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	5 cut(s)	240, 417, 567, 621, 705
DpnI	GATC	4 cut(s)	6, 45, 51, 66
DpnII	GATC	4 cut(s)	4, 43, 49, 64
DraIII	CACNNNGTG	1 cut(s)	518
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	785
Eco57I	CTGAAG	4 cut(s)	341, 536, 660, 803
Eco91I	GGTNACC	1 cut(s)	162
EcoO65I	GGTNACC	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	846
FaeI	CATG	4 cut(s)	74, 658, 695, 731
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	4 cut(s)	70, 654, 691, 727
FbaI	TGATCA	2 cut(s)	49, 64
Fnu4HI	GCNGC	1 cut(s)	747
FokI	GGATG	2 cut(s)	479, 561
Fsp4HI	GCNGC	1 cut(s)	747
FspBI	CTAG	1 cut(s)	782
GluI	GCNGC	1 cut(s)	747
HapII	CCGG	2 cut(s)	20, 97
Hin1II	CATG	4 cut(s)	74, 658, 695, 731
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	6 cut(s)	134, 208, 295, 329, 605, 651
HpaII	CCGG	2 cut(s)	20, 97
HphI	GGTGA	2 cut(s)	156, 614
Hpy188I	TCNGA	7 cut(s)	43, 294, 300, 420, 442, 555, 822
Hpy188III	TCNNGA	7 cut(s)	47, 71, 131, 212, 269, 344, 609
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	4 cut(s)	174, 254, 424, 681
HpyCH4V	TGCA	5 cut(s)	542, 685, 731, 746, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpyF3I	CTNAG	5 cut(s)	240, 417, 567, 621, 705
Hsp92II	CATG	4 cut(s)	74, 658, 695, 731
Ksp22I	TGATCA	2 cut(s)	49, 64
Kzo9I	GATC	4 cut(s)	4, 43, 49, 64
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	1 cut(s)	758
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	1 cut(s)	782
MaeIII	GTNAC	7 cut(s)	128, 162, 254, 424, 602, 770, 807
MalI	GATC	4 cut(s)	6, 45, 51, 66
MboI	GATC	4 cut(s)	4, 43, 49, 64
MboII	GAAGA	3 cut(s)	83, 338, 686
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	5 cut(s)	103, 121, 182, 557, 790
MlyI	GAGTC	4 cut(s)	128, 202, 599, 660
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	5 cut(s)	180, 280, 436, 482, 562
MseI	TTAA	6 cut(s)	102, 351, 471, 561, 585, 660
MspA1I	CMGCKG	1 cut(s)	749
MspCI	CTTAAG	1 cut(s)	350
MspI	CCGG	2 cut(s)	20, 97
MspR9I	CCNGG	1 cut(s)	848
MvaI	CCWGG	1 cut(s)	848
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	701
NdeII	GATC	4 cut(s)	4, 43, 49, 64
NlaIII	CATG	4 cut(s)	74, 658, 695, 731
NlaIV	GGNNCC	2 cut(s)	18, 267
NmeAIII	GCCGAG	1 cut(s)	4
NmuCI	GTSAC	5 cut(s)	128, 162, 424, 602, 770
NspI	RCATGY	1 cut(s)	695
PaeI	GCATGC	1 cut(s)	695
PagI	TCATGA	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	295, 329
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	748
PleI	GAGTC	4 cut(s)	128, 202, 599, 659
PpsI	GAGTC	4 cut(s)	128, 202, 599, 659
Psp6I	CCWGG	1 cut(s)	846
PspEI	GGTNACC	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	846
PspN4I	GGNNCC	2 cut(s)	18, 267
PspPI	GGNCC	1 cut(s)	785
PsuI	RGATCY	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	6 cut(s)	102, 351, 471, 561, 585, 660
SatI	GCNGC	1 cut(s)	747
Sau3AI	GATC	4 cut(s)	4, 43, 49, 64
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	4 cut(s)	128, 202, 599, 660
ScrFI	CCNGG	1 cut(s)	848
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	1 cut(s)	607
SfcI	CTRYAG	1 cut(s)	481
SinI	GGWCC	1 cut(s)	785
SmlI	CTYRAG	2 cut(s)	11, 350
SmoI	CTYRAG	2 cut(s)	11, 350
SphI	GCATGC	1 cut(s)	695
Sse9I	AATT	5 cut(s)	103, 121, 182, 557, 790
SspMI	CTAG	1 cut(s)	782
StyD4I	CCNGG	1 cut(s)	846
TaaI	ACNGT	4 cut(s)	174, 254, 424, 681
TasI	AATT	5 cut(s)	103, 121, 182, 557, 790
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	2 cut(s)	295, 329
Tru1I	TTAA	6 cut(s)	102, 351, 471, 561, 585, 660
Tru9I	TTAA	6 cut(s)	102, 351, 471, 561, 585, 660
TscAI	CASTG	3 cut(s)	177, 429, 692
TseFI	GTSAC	5 cut(s)	128, 162, 424, 602, 770
TseI	GCWGC	1 cut(s)	746
Tsp45I	GTSAC	5 cut(s)	128, 162, 424, 602, 770
TspDTI	ATGAA	1 cut(s)	716
TspRI	CASTG	3 cut(s)	177, 429, 692
Van91I	CCANNNNNTGG	1 cut(s)	275
Vha464I	CTTAAG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	785
XapI	RAATTY	2 cut(s)	557, 790
XceI	RCATGY	1 cut(s)	695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276
XspI	CTAG	1 cut(s)	782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.