Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002721

Physical Location & Seq

Genomic Coordinates Reverse (-)

14474077 .. 14478118

Gene Structure 4042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20950.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGATCGGCTCAAAGCTCCGGCGCGGTTAATGATAGTTTCGGATCTTGATCATACAATGGTTGATCATCATGACAAGGAGAACCTTTCACTTCTCCGGTTTAATTCCCTTTGGGAAGCCAATTATCGTCACGACTCTCTGCTAGTCTTTTCCACTGGGAGGTCGCCAACACTGTACAAAGAATTGAGGAAAGAGAAACCTATGCTGACTCCGGATATAACTATAATGTCTGTGGGAACTGAGATAACTTACGGTAACGATATGGTTCCAGATGATGGTTGGGTTGAGGTTTTAAATCAGAAGTGGGATAAGAACATAGTCAAAGAGGAGTCGAGCAAGTTTTCTGAACTTAAGCTTCAGGCAGAAACAGAACAGCGAGCCCACAAGGTTAGCTTTTATGTGGAGAAAGACAAGGCTCAGACAGTGACAAAGGCTCTTTCAGAGGCTTTGAAGCAGCGCGGGTTGGATGTGAAGATAATCTATAGTGGAGGTATAGATTTGGATATATTACCACAAGGTGCTGGAAAAGGACAAGCTCTTGCATATTTGCTTCAGAAATTTAAGACCGAGGGACATCCACCTGTTAACACTCTTGTTTGTGGTGACTCTGGAAATGATGCTGAGCTTTTTAGTATCCCTGAAGTATATGGAGTCATGGTTAAGAATGCACAAGAAGAACTGTTGCAGTGGCATGCTGAAAATGCTAAGGATAACAAAAATATTATTCATGCGACAGAGAGATGTGCAGCTGGCATCATTCAAGCCATCGGTCACTTTAGTCTGGGTCCAAATTTACCCCCAAGAGATTTTACAGATATTTTGGACTGTGTGGTGGAAAATGTGAACCCTGGTCATAATATAGTGGAGTTTTTCTTATTCTACGAGAAATGGCGACGTGCAGAAATTGAGAATTCTGAGATTTATCTAGCTGGTGTGAAAGCCAATTGTTGTCCATTTGCTACATATGTCCATCCTACTGGCAACGAGCAAACTCTTCATAACTGCATAAATGCTCTGAGAGGCTGCTACGGAGACAAACAGGGAAAAAATTATCGAGTTTGGGTAGATCAGGTTTTACCAACACAAATCGATTCAAAGACATGGCTAGTGAAGTTCGATATGTGGGTATTATCTGGTGAGGAACAATATGCAGCAAGGTCGACTGTTATATTTTCTTCAAAGGGTGAGAAGCCCTCAGATCAGCTCACTTGGATTCGTGGGCATCAGACGTGGATCAAAGGATATGAACCAAAACAAGTTGCACCATTTTTCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016757

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

426

Amino Acids

48.19

Weight (kDa)

5.85

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	9 - 259	3.2e-101	Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3	PF08282	80 - 234	5.8e-13	haloacid dehalogenase-like hydrolase
S6PP_C	PF08472	283 - 316	5.7e-09	Sucrose-6-phosphate phosphohydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51420 AT1G51420 AT1G51420 AT1G51420 AT2G35840 AT2G35840 AT2G35840 AT2G35840 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340
fragaria_vesca	FvH4_6g20950 FvH4_6g20950
malus_domestica	MD12G1045400.v1.1 MD14G1044300.v1.1
prunus_persica	Prupe.7G089300_v2.0.a1 Prupe.7G089300_v2.0.a1
pyrus_communis	pycom12g03920 pycom14g03750
rosa_chinensis	RchiOBHm_Chr3g0477361
rosa_laevigata	RLG00000023729
rosa_multiflora	Rmu_sc0006369.1_g000008
rosa_roxburghii	Rroxscaffold_6G00404250 Rroxscaffold_6G00404730 Rroxscaffold_7G00202730
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700
rosa_samantha	Rh3AG210200 Rh3BG243600 Rh3CG237500 Rh3DG237100
rosa_wichuraiana	Rw0G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	1160
AccII	CGCG	2 cut(s)	25, 459
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	2 cut(s)	25, 459
AclWI	GGATC	3 cut(s)	12, 51, 1241
AcsI	RAATTY	3 cut(s)	557, 790, 910
AcuI	CTGAAG	3 cut(s)	341, 536, 660
AdeI	CACNNNGTG	1 cut(s)	518
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	3 cut(s)	159, 275, 1271
AflII	CTTAAG	1 cut(s)	350
AgsI	TTSAA	4 cut(s)	451, 761, 1095, 1179
AjiI	CACGTC	2 cut(s)	896, 1230
AjnI	CCWGG	1 cut(s)	847
AluBI	AGCT	8 cut(s)	17, 355, 393, 536, 625, 749, 929, 1204
AluI	AGCT	8 cut(s)	17, 355, 393, 536, 625, 749, 929, 1204
Alw26I	GTCTC	1 cut(s)	1026
AlwI	GGATC	3 cut(s)	12, 51, 1241
Aor13HI	TCCGGA	1 cut(s)	211
ApeKI	GCWGC	4 cut(s)	454, 746, 1023, 1151
ApoI	RAATTY	3 cut(s)	557, 790, 910
AspLEI	GCGC	2 cut(s)	25, 459
AspS9I	GGNCC	1 cut(s)	785
AsuHPI	GGTGA	3 cut(s)	614, 1148, 1196
AvaII	GGWCC	1 cut(s)	785
BanII	GRGCYC	1 cut(s)	382
BbvI	GCAGC	4 cut(s)	466, 758, 1010, 1163
BccI	CCATC	3 cut(s)	269, 773, 978
BcgI	CGANNNNNNTGC	2 cut(s)	1140, 1174
BciT130I	CCWGG	1 cut(s)	849
BciVI	GTATCC	1 cut(s)	644
BclI	TGATCA	2 cut(s)	49, 64
BcoDI	GTCTC	1 cut(s)	1026
BfaI	CTAG	3 cut(s)	143, 926, 1106
BfmI	CTRYAG	1 cut(s)	481
BfrI	CTTAAG	1 cut(s)	350
BfuI	GTATCC	1 cut(s)	644
BisI	GCNGC	4 cut(s)	455, 747, 1024, 1152
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	4 cut(s)	456, 748, 1025, 1153
Bme1390I	CCNGG	1 cut(s)	849
Bme18I	GGWCC	1 cut(s)	785
BmgBI	CACGTC	2 cut(s)	896, 1230
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	2 cut(s)	267, 786
BmrFI	CCNGG	1 cut(s)	849
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	3 cut(s)	607, 762, 1231
BmuI	ACTGGG	1 cut(s)	165
BplI	GAGNNNNNCTC	2 cut(s)	1178, 1210
Bpu10I	CCTNAGC	1 cut(s)	705
Bpu1102I	GCTNAGC	1 cut(s)	621
Bsa29I	ATCGAT	1 cut(s)	1089
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	567, 847
BsaWI	WCCGGW	2 cut(s)	96, 211
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 275, 1271
Bse1I	ACTGG	2 cut(s)	160, 982
Bse8I	GATNNNNATC	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	849
BseCI	ATCGAT	1 cut(s)	1089
BseDI	CCNNGG	2 cut(s)	567, 847
BseGI	GGATG	3 cut(s)	472, 574, 970
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	3 cut(s)	159, 275, 1271
BseMII	CTCAG	6 cut(s)	231, 431, 612, 906, 1007, 1209
BseNI	ACTGG	2 cut(s)	160, 982
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	4 cut(s)	466, 758, 1010, 1163
BsgI	GTGCAG	2 cut(s)	765, 918
Bsh1236I	CGCG	2 cut(s)	25, 459
BshVI	ATCGAT	1 cut(s)	1089
BsiSI	CCGG	3 cut(s)	20, 97, 212
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	3 cut(s)	159, 275, 1271
BsmAI	GTCTC	1 cut(s)	1026
BsmFI	GGGAC	1 cut(s)	585
BsmI	GAATGC	1 cut(s)	670
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp13I	TCCGGA	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	7 cut(s)	4, 43, 49, 64, 1066, 1198, 1233
Bsp1720I	GCTNAGC	1 cut(s)	621
BspACI	CCGC	2 cut(s)	25, 459
BspCNI	CTCAG	6 cut(s)	232, 430, 613, 907, 1008, 1208
BspDI	ATCGAT	1 cut(s)	1089
BspEI	TCCGGA	1 cut(s)	211
BspFNI	CGCG	2 cut(s)	25, 459
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	267, 786
BspPI	GGATC	3 cut(s)	12, 51, 1241
BspTI	CTTAAG	1 cut(s)	350
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	2 cut(s)	160, 982
BssECI	CCNNGG	2 cut(s)	567, 847
BssMI	GATC	7 cut(s)	4, 43, 49, 64, 1066, 1198, 1233
Bst2UI	CCWGG	1 cut(s)	849
Bst4CI	ACNGT	6 cut(s)	174, 254, 424, 681, 827, 1165
Bst6I	CTCTTC	1 cut(s)	999
BstAFI	CTTAAG	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	174
BstC8I	GCNNGC	3 cut(s)	378, 693, 751
BstDEI	CTNAG	7 cut(s)	240, 417, 621, 705, 915, 1016, 1195
BstF5I	GGATG	3 cut(s)	472, 574, 970
BstFNI	CGCG	2 cut(s)	25, 459
BstHHI	GCGC	2 cut(s)	25, 459
BstKTI	GATC	7 cut(s)	7, 46, 52, 67, 1069, 1201, 1236
BstMAI	GTCTC	1 cut(s)	1026
BstMBI	GATC	7 cut(s)	4, 43, 49, 64, 1066, 1198, 1233
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstNI	CCWGG	1 cut(s)	849
BstNSI	RCATGY	1 cut(s)	695
BstSCI	CCNGG	1 cut(s)	847
BstSFI	CTRYAG	1 cut(s)	481
BstUI	CGCG	2 cut(s)	25, 459
BstV1I	GCAGC	4 cut(s)	466, 758, 1010, 1163
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	977
BstYI	RGATCY	1 cut(s)	43
Bsu15I	ATCGAT	1 cut(s)	1089
BsuI	GTATCC	1 cut(s)	644
BsuTUI	ATCGAT	1 cut(s)	1089
BtrI	CACGTC	2 cut(s)	896, 1230
BtsCI	GGATG	3 cut(s)	472, 574, 970
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	4 cut(s)	153, 170, 429, 692
Cac8I	GCNNGC	3 cut(s)	378, 693, 751
CciI	TCATGA	1 cut(s)	70
CfoI	GCGC	2 cut(s)	25, 459
Cfr13I	GGNCC	1 cut(s)	785
ClaI	ATCGAT	1 cut(s)	1089
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	5 cut(s)	71, 655, 692, 728, 1101
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	7 cut(s)	240, 417, 621, 705, 915, 1016, 1195
DpnI	GATC	7 cut(s)	6, 45, 51, 66, 1068, 1200, 1235
DpnII	GATC	7 cut(s)	4, 43, 49, 64, 1066, 1198, 1233
DraI	TTTAAA	1 cut(s)	294
DraIII	CACNNNGTG	1 cut(s)	518
Eam1104I	CTCTTC	1 cut(s)	999
EarI	CTCTTC	1 cut(s)	999
Eco24I	GRGCYC	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	785
Eco57I	CTGAAG	3 cut(s)	341, 536, 660
EcoRI	GAATTC	1 cut(s)	910
EcoRII	CCWGG	1 cut(s)	847
EcoT38I	GRGCYC	1 cut(s)	382
FaeI	CATG	5 cut(s)	74, 658, 695, 731, 1104
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	5 cut(s)	70, 654, 691, 727, 1100
FauI	CCCGC	1 cut(s)	452
FauNDI	CATATG	1 cut(s)	964
FbaI	TGATCA	2 cut(s)	49, 64
FblI	GTMKAC	1 cut(s)	1160
Fnu4HI	GCNGC	4 cut(s)	455, 747, 1024, 1152
FokI	GGATG	3 cut(s)	479, 561, 957
FriOI	GRGCYC	1 cut(s)	382
Fsp4HI	GCNGC	4 cut(s)	455, 747, 1024, 1152
FspBI	CTAG	3 cut(s)	143, 926, 1106
GlaI	GCGC	2 cut(s)	24, 458
GluI	GCNGC	4 cut(s)	455, 747, 1024, 1152
HapII	CCGG	3 cut(s)	20, 97, 212
HhaI	GCGC	2 cut(s)	25, 459
Hin1II	CATG	5 cut(s)	74, 658, 695, 731, 1104
Hin6I	GCGC	2 cut(s)	23, 457
HinP1I	GCGC	2 cut(s)	23, 457
HincII	GTYRAC	2 cut(s)	586, 1161
HindII	GTYRAC	2 cut(s)	586, 1161
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	7 cut(s)	134, 208, 329, 605, 651, 1091, 1213
HpaI	GTTAAC	1 cut(s)	586
HpaII	CCGG	3 cut(s)	20, 97, 212
HphI	GGTGA	3 cut(s)	614, 1148, 1196
Hpy166II	GTNNAC	3 cut(s)	586, 844, 1161
Hpy188III	TCNNGA	6 cut(s)	47, 71, 131, 212, 269, 609
Hpy8I	GTNNAC	3 cut(s)	586, 844, 1161
Hpy99I	CGWCG	1 cut(s)	897
HpyCH4III	ACNGT	6 cut(s)	174, 254, 424, 681, 827, 1165
HpyCH4IV	ACGT	2 cut(s)	895, 1229
HpyCH4V	TGCA	8 cut(s)	542, 668, 685, 746, 899, 1005, 1151, 1262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpyF3I	CTNAG	7 cut(s)	240, 417, 621, 705, 915, 1016, 1195
HpySE526I	ACGT	2 cut(s)	895, 1229
Hsp92II	CATG	5 cut(s)	74, 658, 695, 731, 1104
HspAI	GCGC	2 cut(s)	23, 457
Kpn2I	TCCGGA	1 cut(s)	211
Ksp22I	TGATCA	2 cut(s)	49, 64
KspAI	GTTAAC	1 cut(s)	586
Kzo9I	GATC	7 cut(s)	4, 43, 49, 64, 1066, 1198, 1233
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	4 cut(s)	466, 758, 1010, 1163
LweI	GCATC	3 cut(s)	607, 762, 1231
MaeI	CTAG	3 cut(s)	143, 926, 1106
MaeII	ACGT	2 cut(s)	895, 1229
MaeIII	GTNAC	5 cut(s)	128, 254, 424, 602, 770
MalI	GATC	7 cut(s)	6, 45, 51, 66, 1068, 1200, 1235
MboI	GATC	7 cut(s)	4, 43, 49, 64, 1066, 1198, 1233
MboII	GAAGA	4 cut(s)	484, 686, 986, 1167
MfeI	CAATTG	1 cut(s)	943
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	9 cut(s)	103, 121, 182, 557, 790, 903, 910, 943, 1048
MlyI	GAGTC	5 cut(s)	128, 202, 338, 599, 660
MmeI	TCCRAC	1 cut(s)	444
MroI	TCCGGA	1 cut(s)	211
MseI	TTAA	7 cut(s)	29, 102, 293, 351, 561, 585, 660
MspA1I	CMGCKG	1 cut(s)	749
MspCI	CTTAAG	1 cut(s)	350
MspI	CCGG	3 cut(s)	20, 97, 212
MspR9I	CCNGG	1 cut(s)	849
MunI	CAATTG	1 cut(s)	943
Mva1269I	GAATGC	1 cut(s)	670
MvaI	CCWGG	1 cut(s)	849
MvnI	CGCG	2 cut(s)	25, 459
MwoI	GCNNNNNNNGC	1 cut(s)	701
NdeI	CATATG	1 cut(s)	964
NdeII	GATC	7 cut(s)	4, 43, 49, 64, 1066, 1198, 1233
NlaIII	CATG	5 cut(s)	74, 658, 695, 731, 1104
NlaIV	GGNNCC	2 cut(s)	267, 786
NmuCI	GTSAC	4 cut(s)	128, 424, 602, 770
NspI	RCATGY	1 cut(s)	695
PaeI	GCATGC	1 cut(s)	695
PagI	TCATGA	1 cut(s)	70
PctI	GAATGC	1 cut(s)	670
PfeI	GAWTC	2 cut(s)	1091, 1213
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	456, 748, 1025, 1153
PleI	GAGTC	5 cut(s)	128, 202, 337, 599, 659
PpsI	GAGTC	5 cut(s)	128, 202, 337, 599, 659
Psp6I	CCWGG	1 cut(s)	847
PspGI	CCWGG	1 cut(s)	847
PspN4I	GGNNCC	2 cut(s)	267, 786
PspPI	GGNCC	1 cut(s)	785
PsuI	RGATCY	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SalI	GTCGAC	1 cut(s)	1159
SaqAI	TTAA	7 cut(s)	29, 102, 293, 351, 561, 585, 660
SatI	GCNGC	4 cut(s)	455, 747, 1024, 1152
Sau3AI	GATC	7 cut(s)	4, 43, 49, 64, 1066, 1198, 1233
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	5 cut(s)	128, 202, 338, 599, 660
ScrFI	CCNGG	1 cut(s)	849
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	3 cut(s)	607, 762, 1231
SfcI	CTRYAG	1 cut(s)	481
SinI	GGWCC	1 cut(s)	785
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SphI	GCATGC	1 cut(s)	695
Sse9I	AATT	9 cut(s)	103, 121, 182, 557, 790, 903, 910, 943, 1048
SsiI	CCGC	2 cut(s)	25, 459
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	3 cut(s)	143, 926, 1106
StyD4I	CCNGG	1 cut(s)	847
TaaI	ACNGT	6 cut(s)	174, 254, 424, 681, 827, 1165
TaiI	ACGT	2 cut(s)	898, 1232
TaqI	TCGA	5 cut(s)	332, 1054, 1089, 1116, 1160
TaqII	GACCGA	2 cut(s)	581, 758
TasI	AATT	9 cut(s)	103, 121, 182, 557, 790, 903, 910, 943, 1048
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	2 cut(s)	1091, 1213
Tru1I	TTAA	7 cut(s)	29, 102, 293, 351, 561, 585, 660
Tru9I	TTAA	7 cut(s)	29, 102, 293, 351, 561, 585, 660
TscAI	CASTG	4 cut(s)	160, 177, 429, 692
TseFI	GTSAC	4 cut(s)	128, 424, 602, 770
TseI	GCWGC	4 cut(s)	454, 746, 1023, 1151
Tsp45I	GTSAC	4 cut(s)	128, 424, 602, 770
TspDTI	ATGAA	3 cut(s)	716, 986, 1260
TspGWI	ACGGA	1 cut(s)	1044
TspRI	CASTG	4 cut(s)	160, 177, 429, 692
Van91I	CCANNNNNTGG	1 cut(s)	275
Vha464I	CTTAAG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	785
XapI	RAATTY	3 cut(s)	557, 790, 910
XceI	RCATGY	1 cut(s)	695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276
XmiI	GTMKAC	1 cut(s)	1160
XspI	CTAG	3 cut(s)	143, 926, 1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.