MD12G1045400.v1.1

sucrose-phosphatase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
5068514 .. 5072507
3994 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1045400.v1.1.491

Sequence Viewer

Length: 1278 bp
ATGGATCGGCTCGAAGCTCCTGCCCGGCTAATGATAGTTTCAGATCTTGATCATACAATGGTTGATCATCACGACACTGAGAACCTTTCCCTGCTTAGATTTAATTCTTTGTGGGAGGCGAATTACCGTCACGATTCTCTGCTGGTTTTTTCGACTGGAAGGTCACCGACATTGTACAAAGAACTGAGGAAAGAGAAACCCATGTTAACACCAGATATAACAATAATGTCCGTGGGGACTGAGATAACATATGGTAACGCAATGGTTCCTGATGATGGCTGGGTTGAGGTTCTGAATCAAAAATGGGATAGGAACATAGTCAAAGAGGAAGCCAGCAAATATTCTGAACTTAAACTTCAGGCAGAAACAGAGCAACGGCCGCACAAGGTTAGCTTTTATGTCGAGAAAGCCAAGGCTCAGGCAGTGACAAAGGCTCTTTCAGAAGTTTTTGAAAAGCGTGGGCTGGATGTGAAGATAATCTACAGTGGAGGAATGGATTTGGATATATTACCACAAGGTGCTGGCAAAGGACAAGCTCTTGCATATTTGCTTAAGAAATTTAAGAGCGAGGGAAGTTCACCCGTCAACACTCTTGTTTGTGGTGACTCTGGAAATGATGCTGAGCTTTTTAGCATCCCAGAAGTTTATGGTGTCATGGTTAGCAATGCCCAAGAAGAATTGCTGCAGTGGCATGCTGAAAATGCTAAGGGTAACACAAGGATTATTCATGCAACAGAGAGATGTGCAGCTGGAATCATACAAGCCATTGGCCACTTCAAGCTAGGTCCAAGTTTGCCCCCAAGAGATATTGCAGATTTTTCTGACTTTAAGCTGGAGAATCCAAATCCTGGTCATGAACTAGTAAAATTTTTCTTGTTCTATGAGAAATGGAGACGCGCAGAAGTAGAGAATTCAGAGATCTATTTGGCGAGTCTGAAAGCGGATTGCTCTCCATCTGGTACATTTGTCCATCCTTCTGGAGTTGAGCACTCTCTTTCCGACAGCATAAATGCTCTGAGAAACTGTTACGGAGACAAACAGGGAAAACAATTTCGGGTTTGGGTGGATGGTGTATTAGCAACACATGTTGGTTCAAACACATGGCTAGTGAAGTTCGATAAGTGGGAATTATCCGGTGAAGAACGTTATGCAATAAAGGGAACAGCTGTTATAAGTTCAAAGGGTTCTGGTGTTTCAGATGGTTTCACTTGGATTCGAGTGCACCAAACGTGGTACAAAGGATACGAAGCAAAAGATGATTCAACGTGGTTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

426

Amino Acids

47.82

Weight (kDa)

5.77

Isoelectric Point (pI)

28.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S6PP PF05116 9 - 260 7.9e-100 Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3 PF08282 104 - 229 4.9e-12 haloacid dehalogenase-like hydrolase
S6PP_C PF08472 283 - 412 6.1e-55 Sucrose-6-phosphate phosphohydrolase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1172
AasI GACNNNNNNGTC 1 cut(s) 160
AccB7I CCANNNNNTGG 1 cut(s) 848
AccII CGCG 1 cut(s) 897
AciI CCGC 2 cut(s) 380, 941
AclI AACGTT 1 cut(s) 1144
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 377, 769
AcsI RAATTY 3 cut(s) 557, 866, 910
AcuI CTGAAG 1 cut(s) 341
AdeI CACNNNGTG 1 cut(s) 518
AfaI GTAC 3 cut(s) 176, 961, 1235
AfiI CCNNNNNNNGG 2 cut(s) 275, 848
AflII CTTAAG 1 cut(s) 551
AflIII ACRYGT 1 cut(s) 1084
AgsI TTSAA 5 cut(s) 452, 778, 1095, 1179, 1263
AhlI ACTAGT 1 cut(s) 859
AjnI CCWGG 1 cut(s) 847
AluBI AGCT 8 cut(s) 17, 393, 536, 625, 749, 781, 832, 1166
AluI AGCT 8 cut(s) 17, 393, 536, 625, 749, 781, 832, 1166
Alw21I GWGCWC 2 cut(s) 990, 1224
Alw26I GTCTC 2 cut(s) 886, 1026
Alw44I GTGCAC 1 cut(s) 1220
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 377, 769
ApaLI GTGCAC 1 cut(s) 1220
ApeKI GCWGC 2 cut(s) 682, 746
ApoI RAATTY 3 cut(s) 557, 866, 910
AspLEI GCGC 1 cut(s) 899
AspS9I GGNCC 1 cut(s) 785
AsuC2I CCSGG 1 cut(s) 25
AsuHPI GGTGA 4 cut(s) 156, 570, 614, 1148
AvaII GGWCC 1 cut(s) 785
BaeGI GKGCMC 1 cut(s) 1224
BaeI ACNNNNGTAYC 2 cut(s) 951, 984
BalI TGGCCA 1 cut(s) 771
BarI GAAGNNNNNNTAC 2 cut(s) 464, 496
Bbv12I GWGCWC 2 cut(s) 990, 1224
BbvI GCAGC 2 cut(s) 669, 758
BccI CCATC 5 cut(s) 269, 961, 978, 1061, 1193
BceAI ACGGC 1 cut(s) 392
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 849
BciVI GTATCC 1 cut(s) 1235
BclI TGATCA 2 cut(s) 49, 64
BcnI CCSGG 1 cut(s) 25
BcoDI GTCTC 2 cut(s) 886, 1026
BcuI ACTAGT 1 cut(s) 859
BfaI CTAG 3 cut(s) 782, 860, 1106
BfmI CTRYAG 2 cut(s) 481, 683
BfrI CTTAAG 1 cut(s) 551
BfuI GTATCC 1 cut(s) 1235
BglII AGATCT 2 cut(s) 43, 918
BisI GCNGC 3 cut(s) 380, 683, 747
BlpI GCTNAGC 1 cut(s) 621
BlsI GCNGC 3 cut(s) 381, 684, 748
Bme1390I CCNGG 2 cut(s) 25, 849
Bme18I GGWCC 1 cut(s) 785
BmgT120I GGNCC 1 cut(s) 785
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 25, 849
BmsI GCATC 2 cut(s) 607, 642
BpmI CTGGAG 2 cut(s) 854, 999
Bpu10I CCTNAGC 2 cut(s) 417, 705
Bpu1102I GCTNAGC 1 cut(s) 621
BpuMI CCSGG 1 cut(s) 25
BsaBI GATNNNNATC 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 231, 411
BsaWI WCCGGW 1 cut(s) 1133
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 848
Bse1I ACTGG 1 cut(s) 160
Bse3DI GCAATG 2 cut(s) 267, 670
Bse8I GATNNNNATC 1 cut(s) 48
BseBI CCWGG 1 cut(s) 849
BseDI CCNNGG 2 cut(s) 231, 411
BseGI GGATG 4 cut(s) 472, 633, 970, 1072
BseJI GATNNNNATC 1 cut(s) 48
BseLI CCNNNNNNNGG 2 cut(s) 275, 848
BseMI GCAATG 2 cut(s) 267, 670
BseMII CTCAG 6 cut(s) 69, 176, 231, 431, 612, 1007
BseNI ACTGG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 1224
BseX3I CGGCCG 1 cut(s) 377
BseXI GCAGC 2 cut(s) 669, 758
BseYI CCCAGC 1 cut(s) 279
BsgI GTGCAG 1 cut(s) 765
Bsh1236I CGCG 1 cut(s) 897
Bsh1285I CGRYCG 1 cut(s) 380
BshFI GGCC 2 cut(s) 379, 771
BsiEI CGRYCG 1 cut(s) 380
BsiHKAI GWGCWC 2 cut(s) 990, 1224
BsiSI CCGG 2 cut(s) 25, 1134
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 2 cut(s) 275, 848
BsmAI GTCTC 2 cut(s) 886, 1026
BsmBI CGTCTC 1 cut(s) 886
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 2 cut(s) 379, 771
Bsp1286I GDGCHC 2 cut(s) 990, 1224
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 5 cut(s) 4, 43, 49, 64, 918
Bsp1720I GCTNAGC 1 cut(s) 621
BspACI CCGC 2 cut(s) 380, 941
BspANI GGCC 2 cut(s) 379, 771
BspCNI CTCAG 6 cut(s) 70, 177, 232, 430, 613, 1008
BspFNI CGCG 1 cut(s) 897
BspHI TCATGA 1 cut(s) 853
BspLI GGNNCC 1 cut(s) 267
BspMAI CTGCAG 1 cut(s) 687
BspPI GGATC 1 cut(s) 12
BspTI CTTAAG 1 cut(s) 551
BsrDI GCAATG 2 cut(s) 267, 670
BsrGI TGTACA 1 cut(s) 174
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 2 cut(s) 231, 411
BssMI GATC 5 cut(s) 4, 43, 49, 64, 918
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 849
Bst4CI ACNGT 3 cut(s) 128, 485, 1025
BstAFI CTTAAG 1 cut(s) 551
BstAUI TGTACA 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 334, 523, 693
BstDEI CTNAG 8 cut(s) 78, 95, 185, 240, 417, 621, 705, 1016
BstDSI CCRYGG 1 cut(s) 231
BstEII GGTNACC 1 cut(s) 162
BstF5I GGATG 4 cut(s) 472, 633, 970, 1072
BstFNI CGCG 1 cut(s) 897
BstHHI GCGC 1 cut(s) 899
BstKTI GATC 5 cut(s) 7, 46, 52, 67, 921
BstMAI GTCTC 2 cut(s) 886, 1026
BstMBI GATC 5 cut(s) 4, 43, 49, 64, 918
BstMCI CGRYCG 1 cut(s) 380
BstMWI GCNNNNNNNGC 3 cut(s) 379, 688, 701
BstNI CCWGG 1 cut(s) 849
BstNSI RCATGY 2 cut(s) 695, 1088
BstPI GGTNACC 1 cut(s) 162
BstSCI CCNGG 2 cut(s) 23, 847
BstSFI CTRYAG 2 cut(s) 481, 683
BstSLI GKGCMC 1 cut(s) 1224
BstUI CGCG 1 cut(s) 897
BstV1I GCAGC 2 cut(s) 669, 758
BstX2I RGATCY 2 cut(s) 43, 918
BstXI CCANNNNNNTGG 1 cut(s) 977
BstYI RGATCY 2 cut(s) 43, 918
BstZI CGGCCG 1 cut(s) 377
BsuI GTATCC 1 cut(s) 1235
BsuRI GGCC 2 cut(s) 379, 771
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 4 cut(s) 472, 633, 970, 1072
BtsI GCAGTG 2 cut(s) 429, 692
BtsIMutI CAGTG 4 cut(s) 75, 429, 490, 692
Cac8I GCNNGC 3 cut(s) 334, 523, 693
CciI TCATGA 1 cut(s) 853
CfoI GCGC 1 cut(s) 899
Cfr13I GGNCC 1 cut(s) 785
CseI GACGC 1 cut(s) 903
Csp6I GTAC 3 cut(s) 175, 960, 1234
CviAII CATG 7 cut(s) 202, 655, 692, 728, 854, 1085, 1101
CviQI GTAC 3 cut(s) 175, 960, 1234
DdeI CTNAG 8 cut(s) 78, 95, 185, 240, 417, 621, 705, 1016
DpnI GATC 5 cut(s) 6, 45, 51, 66, 920
DpnII GATC 5 cut(s) 4, 43, 49, 64, 918
DraIII CACNNNGTG 1 cut(s) 518
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
EaeI YGGCCR 2 cut(s) 377, 769
EagI CGGCCG 1 cut(s) 377
EclXI CGGCCG 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 785
Eco52I CGGCCG 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 341
Eco91I GGTNACC 1 cut(s) 162
EcoO65I GGTNACC 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 910
EcoRII CCWGG 1 cut(s) 847
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
Esp3I CGTCTC 1 cut(s) 886
FaeI CATG 7 cut(s) 205, 658, 695, 731, 857, 1088, 1104
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 1 cut(s) 250
FatI CATG 7 cut(s) 201, 654, 691, 727, 853, 1084, 1100
FauNDI CATATG 1 cut(s) 250
FbaI TGATCA 2 cut(s) 49, 64
Fnu4HI GCNGC 3 cut(s) 380, 683, 747
FokI GGATG 4 cut(s) 479, 620, 957, 1079
Fsp4HI GCNGC 3 cut(s) 380, 683, 747
FspBI CTAG 3 cut(s) 782, 860, 1106
GlaI GCGC 1 cut(s) 898
GluI GCNGC 3 cut(s) 380, 683, 747
GsaI CCCAGC 1 cut(s) 283
GsuI CTGGAG 2 cut(s) 854, 999
HaeIII GGCC 2 cut(s) 379, 771
HapII CCGG 2 cut(s) 25, 1134
HgaI GACGC 1 cut(s) 903
HhaI GCGC 1 cut(s) 899
Hin1II CATG 7 cut(s) 205, 658, 695, 731, 857, 1088, 1104
Hin6I GCGC 1 cut(s) 897
HinP1I GCGC 1 cut(s) 897
HincII GTYRAC 2 cut(s) 207, 586
HindII GTYRAC 2 cut(s) 207, 586
HinfI GANTC 8 cut(s) 134, 295, 605, 753, 838, 931, 1213, 1259
HpaI GTTAAC 1 cut(s) 207
HpaII CCGG 2 cut(s) 25, 1134
HphI GGTGA 4 cut(s) 156, 570, 614, 1148
Hpy166II GTNNAC 4 cut(s) 207, 578, 586, 1222
Hpy188III TCNNGA 8 cut(s) 47, 71, 131, 269, 403, 609, 854, 978
Hpy8I GTNNAC 4 cut(s) 207, 578, 586, 1222
HpyAV CCTTC 2 cut(s) 153, 984
HpyCH4III ACNGT 3 cut(s) 128, 485, 1025
HpyCH4IV ACGT 3 cut(s) 1144, 1229, 1265
HpyCH4V TGCA 7 cut(s) 542, 685, 731, 746, 812, 1151, 1222
HpyF10VI GCNNNNNNNGC 3 cut(s) 379, 688, 701
HpyF3I CTNAG 8 cut(s) 78, 95, 185, 240, 417, 621, 705, 1016
HpySE526I ACGT 3 cut(s) 1144, 1229, 1265
Hsp92II CATG 7 cut(s) 205, 658, 695, 731, 857, 1088, 1104
HspAI GCGC 1 cut(s) 897
Ksp22I TGATCA 2 cut(s) 49, 64
KspAI GTTAAC 1 cut(s) 207
Kzo9I GATC 5 cut(s) 4, 43, 49, 64, 918
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 2 cut(s) 669, 758
LweI GCATC 2 cut(s) 607, 642
MaeI CTAG 3 cut(s) 782, 860, 1106
MaeII ACGT 3 cut(s) 1144, 1229, 1265
MaeIII GTNAC 7 cut(s) 128, 162, 254, 424, 602, 710, 1025
MalI GATC 5 cut(s) 6, 45, 51, 66, 920
MboI GATC 5 cut(s) 4, 43, 49, 64, 918
MboII GAAGA 4 cut(s) 484, 686, 1151, 1264
MflI RGATCY 2 cut(s) 43, 918
MhlI GDGCHC 2 cut(s) 990, 1224
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 8 cut(s) 103, 121, 557, 677, 866, 910, 1049, 1127
MluNI TGGCCA 1 cut(s) 771
MlyI GAGTC 2 cut(s) 599, 940
MmeI TCCRAC 1 cut(s) 1023
MnlI CCTC 6 cut(s) 109, 180, 280, 319, 482, 562
Mox20I TGGCCA 1 cut(s) 771
MscI TGGCCA 1 cut(s) 771
MseI TTAA 6 cut(s) 102, 206, 351, 552, 561, 828
Msp20I TGGCCA 1 cut(s) 771
MspA1I CMGCKG 2 cut(s) 749, 1166
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 2 cut(s) 25, 1134
MspR9I CCNGG 2 cut(s) 25, 849
MvaI CCWGG 1 cut(s) 849
MvnI CGCG 1 cut(s) 897
MwoI GCNNNNNNNGC 3 cut(s) 379, 688, 701
NciI CCSGG 1 cut(s) 25
NdeI CATATG 1 cut(s) 250
NdeII GATC 5 cut(s) 4, 43, 49, 64, 918
NlaIII CATG 7 cut(s) 205, 658, 695, 731, 857, 1088, 1104
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 4 cut(s) 128, 162, 424, 602
NspI RCATGY 2 cut(s) 695, 1088
PaeI GCATGC 1 cut(s) 695
PagI TCATGA 1 cut(s) 853
PciI ACATGT 1 cut(s) 1084
PfeI GAWTC 6 cut(s) 134, 295, 753, 838, 1213, 1259
PflMI CCANNNNNTGG 1 cut(s) 848
PkrI GCNGC 3 cut(s) 381, 684, 748
PleI GAGTC 2 cut(s) 599, 939
PpsI GAGTC 2 cut(s) 599, 939
PscI ACATGT 1 cut(s) 1084
PsiI TTATAA 1 cut(s) 1172
Psp1406I AACGTT 1 cut(s) 1144
Psp6I CCWGG 1 cut(s) 847
PspEI GGTNACC 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 279
PspGI CCWGG 1 cut(s) 847
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 785
PstI CTGCAG 1 cut(s) 687
PsuI RGATCY 2 cut(s) 43, 918
PvuII CAGCTG 2 cut(s) 749, 1166
RsaI GTAC 3 cut(s) 176, 961, 1235
RsaNI GTAC 3 cut(s) 175, 960, 1234
SaqAI TTAA 6 cut(s) 102, 206, 351, 552, 561, 828
SatI GCNGC 3 cut(s) 380, 683, 747
Sau3AI GATC 5 cut(s) 4, 43, 49, 64, 918
Sau96I GGNCC 1 cut(s) 785
SchI GAGTC 2 cut(s) 599, 940
ScrFI CCNGG 2 cut(s) 25, 849
SduI GDGCHC 2 cut(s) 990, 1224
SfaNI GCATC 2 cut(s) 607, 642
SfcI CTRYAG 2 cut(s) 481, 683
SinI GGWCC 1 cut(s) 785
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
SpeI ACTAGT 1 cut(s) 859
SphI GCATGC 1 cut(s) 695
Sse9I AATT 8 cut(s) 103, 121, 557, 677, 866, 910, 1049, 1127
SsiI CCGC 2 cut(s) 380, 941
SspI AATATT 1 cut(s) 341
SspMI CTAG 3 cut(s) 782, 860, 1106
StyD4I CCNGG 2 cut(s) 23, 847
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 3 cut(s) 128, 485, 1025
TaiI ACGT 3 cut(s) 1147, 1232, 1268
TaqI TCGA 5 cut(s) 12, 152, 402, 1116, 1216
TasI AATT 8 cut(s) 103, 121, 557, 677, 866, 910, 1049, 1127
TatI WGTACW 1 cut(s) 174
TauI GCSGC 1 cut(s) 382
TfiI GAWTC 6 cut(s) 134, 295, 753, 838, 1213, 1259
Tru1I TTAA 6 cut(s) 102, 206, 351, 552, 561, 828
Tru9I TTAA 6 cut(s) 102, 206, 351, 552, 561, 828
TscAI CASTG 4 cut(s) 82, 429, 490, 692
TseFI GTSAC 4 cut(s) 128, 162, 424, 602
TseI GCWGC 2 cut(s) 682, 746
Tsp45I GTSAC 4 cut(s) 128, 162, 424, 602
TspDTI ATGAA 2 cut(s) 716, 870
TspGWI ACGGA 2 cut(s) 220, 1044
TspRI CASTG 4 cut(s) 82, 429, 490, 692
Van91I CCANNNNNTGG 1 cut(s) 848
Vha464I CTTAAG 1 cut(s) 551
VneI GTGCAC 1 cut(s) 1220
VpaK11BI GGWCC 1 cut(s) 785
XapI RAATTY 3 cut(s) 557, 866, 910
XceI RCATGY 2 cut(s) 695, 1088
XspI CTAG 3 cut(s) 782, 860, 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.