Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002721

Physical Location & Seq

Genomic Coordinates Reverse (-)

3806362 .. 3807738

Gene Structure 1377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03920.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGATCGGGTCGAAGCTCCTGCCCGGCTAATGATAGTTTCAGATCTTGATCATACAATGGTTGATCATCACGACACTGAGAACCTTTCCCTGCTTAGATTTAATTCTTTGTGGGAGGCGAATTACCGTCACGATTCTCTGCTGGTTTTTTCTACTGGAAGGTCACCGACATTGTACAAAGAACTGAGGAAAGAGAAACCCATGTTAACACCAGATATAACAATAATGTCTGTGGGGACTGAGATAACATATGGTAACGCAATGGTTCCTGATGATGGCTGGGTTGAGGTTCTGAATAAAAAATGGGATAGGAACGTAGTCAAAGAGGAAGCCAGCAAATTTTCTGAGCTTAAACTTCAGGCAGAAACAGAGCAACGGCCGCACAAGGTTAGCTTTTATGTCGAGAAAGCCAAGGCTCAGGCAGTGACAAAGATAATCTACAGTGGAGGAATGGATTTGGATATATTACCACAAGGTGCTGGCAAAGGACAAGCTCTTGCATATTTGCTTAAGAAATTTAAGAGTGAGGGAAGTTCACCCGTCAACACTCTTGTTTGTGGTGACTCTGGAAATGATGCTGAGCTTTTTAGCATCCCAGAAGTTTATGGTGTCATGGTTAGCAATGCCCAAGAAGAATTGTTGCAGTGGCATGCTGAAAATGCTAAGGGTAACACAAGGATTATTCATGCAACAGAGAGATGTGCAGCTGGAATCATACAAGCCATTGGCCACTTCAAGCTAGGTCCAAGTTTGCCCCCAAGGGATATTGCAGATTTTTCTGACTATAAACTGGAGAATCCAAATCCTGGTCATGAACTAGTAAAATTTTTCTTGTTCTATGAGAAATGGAGACGCGCAGAAGTTGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016757

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

291

Amino Acids

32.71

Weight (kDa)

5.65

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51420 AT1G51420 AT1G51420 AT1G51420 AT2G35840 AT2G35840 AT2G35840 AT2G35840 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340
fragaria_vesca	FvH4_6g20950 FvH4_6g20950
malus_domestica	MD12G1045400.v1.1 MD14G1044300.v1.1
prunus_persica	Prupe.7G089300_v2.0.a1 Prupe.7G089300_v2.0.a1
pyrus_communis	pycom12g03920 pycom14g03750
rosa_chinensis	RchiOBHm_Chr3g0477361
rosa_laevigata	RLG00000023729
rosa_multiflora	Rmu_sc0006369.1_g000008
rosa_roxburghii	Rroxscaffold_6G00404250 Rroxscaffold_6G00404730 Rroxscaffold_7G00202730
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700
rosa_samantha	Rh3AG210200 Rh3BG243600 Rh3CG237500 Rh3DG237100
rosa_wichuraiana	Rw0G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	806
AccII	CGCG	1 cut(s)	855
AciI	CCGC	1 cut(s)	380
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	377, 727
AcsI	RAATTY	3 cut(s)	338, 515, 824
AcuI	CTGAAG	1 cut(s)	341
AdeI	CACNNNGTG	1 cut(s)	476
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	275, 806
AflII	CTTAAG	1 cut(s)	509
AgsI	TTSAA	1 cut(s)	736
AhlI	ACTAGT	1 cut(s)	817
AjnI	CCWGG	1 cut(s)	805
AluBI	AGCT	7 cut(s)	17, 349, 393, 494, 583, 707, 739
AluI	AGCT	7 cut(s)	17, 349, 393, 494, 583, 707, 739
Alw26I	GTCTC	1 cut(s)	844
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	377, 727
ApeKI	GCWGC	1 cut(s)	704
ApoI	RAATTY	3 cut(s)	338, 515, 824
AspLEI	GCGC	1 cut(s)	857
AspS9I	GGNCC	1 cut(s)	743
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	3 cut(s)	156, 528, 572
AvaII	GGWCC	1 cut(s)	743
BalI	TGGCCA	1 cut(s)	729
BbvI	GCAGC	1 cut(s)	716
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	392
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	807
BclI	TGATCA	2 cut(s)	49, 64
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	844
BcuI	ACTAGT	1 cut(s)	817
BfaI	CTAG	2 cut(s)	740, 818
BfmI	CTRYAG	1 cut(s)	439
BfrI	CTTAAG	1 cut(s)	509
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	2 cut(s)	380, 705
BlpI	GCTNAGC	1 cut(s)	579
BlsI	GCNGC	2 cut(s)	381, 706
Bme1390I	CCNGG	2 cut(s)	25, 807
Bme18I	GGWCC	1 cut(s)	743
BmgT120I	GGNCC	1 cut(s)	743
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	2 cut(s)	25, 807
BmsI	GCATC	2 cut(s)	565, 600
BpmI	CTGGAG	1 cut(s)	812
Bpu10I	CCTNAGC	2 cut(s)	417, 663
Bpu1102I	GCTNAGC	1 cut(s)	579
BpuMI	CCSGG	1 cut(s)	25
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	411, 758
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 806
Bse1I	ACTGG	2 cut(s)	160, 795
Bse3DI	GCAATG	2 cut(s)	267, 628
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	807
BseDI	CCNNGG	2 cut(s)	411, 758
BseGI	GGATG	1 cut(s)	591
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	275, 806
BseMI	GCAATG	2 cut(s)	267, 628
BseMII	CTCAG	6 cut(s)	69, 176, 231, 336, 431, 570
BseNI	ACTGG	2 cut(s)	160, 795
BseX3I	CGGCCG	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	716
BseYI	CCCAGC	1 cut(s)	279
BsgI	GTGCAG	1 cut(s)	723
Bsh1236I	CGCG	1 cut(s)	855
Bsh1285I	CGRYCG	1 cut(s)	380
BshFI	GGCC	2 cut(s)	379, 729
BsiEI	CGRYCG	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	275, 806
BsmAI	GTCTC	1 cut(s)	844
BsmBI	CGTCTC	1 cut(s)	844
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	379, 729
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	4 cut(s)	4, 43, 49, 64
Bsp1720I	GCTNAGC	1 cut(s)	579
BspACI	CCGC	1 cut(s)	380
BspANI	GGCC	2 cut(s)	379, 729
BspCNI	CTCAG	6 cut(s)	70, 177, 232, 337, 430, 571
BspFNI	CGCG	1 cut(s)	855
BspHI	TCATGA	1 cut(s)	811
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	509
BsrDI	GCAATG	2 cut(s)	267, 628
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	2 cut(s)	160, 795
BssECI	CCNNGG	2 cut(s)	411, 758
BssMI	GATC	4 cut(s)	4, 43, 49, 64
BssT1I	CCWWGG	2 cut(s)	411, 758
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	2 cut(s)	128, 443
BstAFI	CTTAAG	1 cut(s)	509
BstAUI	TGTACA	1 cut(s)	174
BstC8I	GCNNGC	3 cut(s)	334, 481, 651
BstDEI	CTNAG	8 cut(s)	78, 95, 185, 240, 345, 417, 579, 663
BstEII	GGTNACC	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	591
BstFNI	CGCG	1 cut(s)	855
BstHHI	GCGC	1 cut(s)	857
BstKTI	GATC	4 cut(s)	7, 46, 52, 67
BstMAI	GTCTC	1 cut(s)	844
BstMBI	GATC	4 cut(s)	4, 43, 49, 64
BstMCI	CGRYCG	1 cut(s)	380
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 659
BstNI	CCWGG	1 cut(s)	807
BstNSI	RCATGY	1 cut(s)	653
BstPI	GGTNACC	1 cut(s)	162
BstSCI	CCNGG	2 cut(s)	23, 805
BstSFI	CTRYAG	1 cut(s)	439
BstUI	CGCG	1 cut(s)	855
BstV1I	GCAGC	1 cut(s)	716
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BstZI	CGGCCG	1 cut(s)	377
BsuRI	GGCC	2 cut(s)	379, 729
BtsCI	GGATG	1 cut(s)	591
BtsI	GCAGTG	2 cut(s)	429, 650
BtsIMutI	CAGTG	4 cut(s)	75, 429, 448, 650
Cac8I	GCNNGC	3 cut(s)	334, 481, 651
CciI	TCATGA	1 cut(s)	811
CfoI	GCGC	1 cut(s)	857
Cfr13I	GGNCC	1 cut(s)	743
CseI	GACGC	1 cut(s)	861
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	5 cut(s)	202, 613, 650, 686, 812
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	8 cut(s)	78, 95, 185, 240, 345, 417, 579, 663
DpnI	GATC	4 cut(s)	6, 45, 51, 66
DpnII	GATC	4 cut(s)	4, 43, 49, 64
DraIII	CACNNNGTG	1 cut(s)	476
EaeI	YGGCCR	2 cut(s)	377, 727
EagI	CGGCCG	1 cut(s)	377
EclXI	CGGCCG	1 cut(s)	377
Eco130I	CCWWGG	2 cut(s)	411, 758
Eco47I	GGWCC	1 cut(s)	743
Eco52I	CGGCCG	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	162
EcoO65I	GGTNACC	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	805
EcoT14I	CCWWGG	2 cut(s)	411, 758
ErhI	CCWWGG	2 cut(s)	411, 758
Esp3I	CGTCTC	1 cut(s)	844
FaeI	CATG	5 cut(s)	205, 616, 653, 689, 815
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	5 cut(s)	201, 612, 649, 685, 811
FauNDI	CATATG	1 cut(s)	250
FbaI	TGATCA	2 cut(s)	49, 64
Fnu4HI	GCNGC	2 cut(s)	380, 705
FokI	GGATG	1 cut(s)	578
Fsp4HI	GCNGC	2 cut(s)	380, 705
FspBI	CTAG	2 cut(s)	740, 818
GlaI	GCGC	1 cut(s)	856
GluI	GCNGC	2 cut(s)	380, 705
GsaI	CCCAGC	1 cut(s)	283
GsuI	CTGGAG	1 cut(s)	812
HaeIII	GGCC	2 cut(s)	379, 729
HapII	CCGG	1 cut(s)	25
HgaI	GACGC	1 cut(s)	861
HhaI	GCGC	1 cut(s)	857
Hin1II	CATG	5 cut(s)	205, 616, 653, 689, 815
Hin6I	GCGC	1 cut(s)	855
HinP1I	GCGC	1 cut(s)	855
HincII	GTYRAC	2 cut(s)	207, 544
HindII	GTYRAC	2 cut(s)	207, 544
HinfI	GANTC	4 cut(s)	134, 563, 711, 796
HpaI	GTTAAC	1 cut(s)	207
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	3 cut(s)	156, 528, 572
Hpy166II	GTNNAC	3 cut(s)	207, 536, 544
Hpy188I	TCNGA	4 cut(s)	43, 294, 346, 781
Hpy188III	TCNNGA	7 cut(s)	47, 71, 131, 269, 403, 567, 812
Hpy8I	GTNNAC	3 cut(s)	207, 536, 544
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	2 cut(s)	128, 443
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	5 cut(s)	500, 643, 689, 704, 770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 659
HpyF3I	CTNAG	8 cut(s)	78, 95, 185, 240, 345, 417, 579, 663
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	5 cut(s)	205, 616, 653, 689, 815
HspAI	GCGC	1 cut(s)	855
Ksp22I	TGATCA	2 cut(s)	49, 64
KspAI	GTTAAC	1 cut(s)	207
Kzo9I	GATC	4 cut(s)	4, 43, 49, 64
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	1 cut(s)	716
LweI	GCATC	2 cut(s)	565, 600
MaeI	CTAG	2 cut(s)	740, 818
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	6 cut(s)	128, 162, 254, 424, 560, 668
MalI	GATC	4 cut(s)	6, 45, 51, 66
MboI	GATC	4 cut(s)	4, 43, 49, 64
MboII	GAAGA	1 cut(s)	644
MflI	RGATCY	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	729
MluCI	AATT	6 cut(s)	103, 121, 338, 515, 635, 824
MluNI	TGGCCA	1 cut(s)	729
MlyI	GAGTC	1 cut(s)	557
MnlI	CCTC	6 cut(s)	109, 180, 280, 319, 440, 520
Mox20I	TGGCCA	1 cut(s)	729
MscI	TGGCCA	1 cut(s)	729
MseI	TTAA	5 cut(s)	102, 206, 351, 510, 519
Msp20I	TGGCCA	1 cut(s)	729
MspA1I	CMGCKG	1 cut(s)	707
MspCI	CTTAAG	1 cut(s)	509
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	2 cut(s)	25, 807
MvaI	CCWGG	1 cut(s)	807
MvnI	CGCG	1 cut(s)	855
MwoI	GCNNNNNNNGC	2 cut(s)	379, 659
NciI	CCSGG	1 cut(s)	25
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	4 cut(s)	4, 43, 49, 64
NlaIII	CATG	5 cut(s)	205, 616, 653, 689, 815
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	4 cut(s)	128, 162, 424, 560
NspI	RCATGY	1 cut(s)	653
PaeI	GCATGC	1 cut(s)	653
PagI	TCATGA	1 cut(s)	811
PfeI	GAWTC	3 cut(s)	134, 711, 796
PflMI	CCANNNNNTGG	1 cut(s)	806
PkrI	GCNGC	2 cut(s)	381, 706
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
Psp6I	CCWGG	1 cut(s)	805
PspEI	GGTNACC	1 cut(s)	162
PspFI	CCCAGC	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	805
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	743
PsuI	RGATCY	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	5 cut(s)	102, 206, 351, 510, 519
SatI	GCNGC	2 cut(s)	380, 705
Sau3AI	GATC	4 cut(s)	4, 43, 49, 64
Sau96I	GGNCC	1 cut(s)	743
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	2 cut(s)	25, 807
SfaNI	GCATC	2 cut(s)	565, 600
SfcI	CTRYAG	1 cut(s)	439
SinI	GGWCC	1 cut(s)	743
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
SpeI	ACTAGT	1 cut(s)	817
SphI	GCATGC	1 cut(s)	653
Sse9I	AATT	6 cut(s)	103, 121, 338, 515, 635, 824
SsiI	CCGC	1 cut(s)	380
SspMI	CTAG	2 cut(s)	740, 818
StyD4I	CCNGG	2 cut(s)	23, 805
StyI	CCWWGG	2 cut(s)	411, 758
TaaI	ACNGT	2 cut(s)	128, 443
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	12, 402
TasI	AATT	6 cut(s)	103, 121, 338, 515, 635, 824
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	382
TfiI	GAWTC	3 cut(s)	134, 711, 796
Tru1I	TTAA	5 cut(s)	102, 206, 351, 510, 519
Tru9I	TTAA	5 cut(s)	102, 206, 351, 510, 519
TscAI	CASTG	4 cut(s)	82, 429, 448, 650
TseFI	GTSAC	4 cut(s)	128, 162, 424, 560
TseI	GCWGC	1 cut(s)	704
Tsp45I	GTSAC	4 cut(s)	128, 162, 424, 560
TspDTI	ATGAA	2 cut(s)	674, 828
TspRI	CASTG	4 cut(s)	82, 429, 448, 650
Van91I	CCANNNNNTGG	1 cut(s)	806
Vha464I	CTTAAG	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	743
XapI	RAATTY	3 cut(s)	338, 515, 824
XceI	RCATGY	1 cut(s)	653
XspI	CTAG	2 cut(s)	740, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.