Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00006

Orthogroup ID

OG0002721

Physical Location & Seq

Genomic Coordinates Reverse (-)

175115 .. 177979

Gene Structure 2865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G000300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGATCGGCTCAAGGCTCCGGCTCGGCTAATGATAGTTTCGGATCTTGATCATACAATGGTTGATCATCATGACAAGGAGAATCTTTCTCTTCTCCGGTTTAATTCTCTTTGGGAAGCCAATTATCGTCACGACTCTCTGCTGGTCTTTTCAACTGGAAGGTCACCGACACTGTACAAAGAATTGAGGAAAGAGAAACCTATGCTGACTCCGGATATAACAATAATGTCTGTGGGAACTGAGATAACTTACGGTAACGCGATGGTTCCAGATGATGGTTGGGTTGAGGTTCTGAATCAGAAGTGGGATAAGAACATTGTCAAAGAGGAATCAAGCAAGTTTCCTGAACTTAAGCTTCAGGCAGAAACAGAGCAACGGGCACACAAGGTTAGCTTTTATGTTGAGAAAGACAAGGCTCAGACAGTGACAAAGGCTCTTTCAGAGGCTTTGAAACAGCGTGGGTTGGATGTTAAGATAATCTATAGTGGAGGAATAGATTTGGATATATTACCACAAGGTGCTGGAAAAGGACAAGCTCTTGCATATTTGCTTCAGAAATTTAAGACTGAGGGACATCCACCTGTTAATACTCTTGTTTGTGGTGACTCTGGAAATGATGCTGAGCTTTTTAGTATCCCTGAAGTATATGGAGTCATGGTTAAGAACGCCCAAGAAGAACTGTTGCAGTGGCATGCTGAAAATGCTAAGGATAACAAAAAGATTATTCATGCAACAGAGCATTGGTCATTAGTCTGGTCCAGTCTGTTACAGTACTTCAGACTTCAAGCATTGGTCTTACTATTGGAGTCTAGAGCCAAATTGTTTCTATCCCAGCCAAGATGTTGTCAAGAATTATATCTTTTCAGAAGAAATGCTTCTTGTTGTCACGTCAATAATGAATCACATGGTCTAGGTTCAAGTGAGCATTGTAGTTTTACGTGTCCATCTGCTACATATGTCCATCCTACTGGCAACGAGCAAAGTCTTCATAACTGCATAAATGCTCTGAGAGGCTGCTATGGAGACAAACAGGGAAAACATTATCGAGTTTGGGTAGATCAGGTTTTACCAACACAAATCGATTCAAAGACGTGGCTAGTGAAGTTCGATATGTGGGTATTATCTGGTGAGGAACAATATGCAGCAAGGGGGACTGCTATATTTTCTTCAAAGGGTGAGAGTCCTTCAGATCAGCTCACTTGGATTCGTGGGCATCAGACATGGATCAGAGGATATGAACCAAAACAAGTTGCACCATTTTTCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016757

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

422

Amino Acids

47.97

Weight (kDa)

6.6

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	9 - 247	5.5e-94	Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3	PF08282	100 - 232	2.5e-12	haloacid dehalogenase-like hydrolase
S6PP_C	PF08472	311 - 409	1.8e-32	Sucrose-6-phosphate phosphohydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51420 AT1G51420 AT1G51420 AT1G51420 AT2G35840 AT2G35840 AT2G35840 AT2G35840 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340
fragaria_vesca	FvH4_6g20950 FvH4_6g20950
malus_domestica	MD12G1045400.v1.1 MD14G1044300.v1.1
prunus_persica	Prupe.7G089300_v2.0.a1 Prupe.7G089300_v2.0.a1
pyrus_communis	pycom12g03920 pycom14g03750
rosa_chinensis	RchiOBHm_Chr3g0477361
rosa_laevigata	RLG00000023729
rosa_multiflora	Rmu_sc0006369.1_g000008
rosa_roxburghii	Rroxscaffold_6G00404250 Rroxscaffold_6G00404730 Rroxscaffold_7G00202730
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700
rosa_samantha	Rh3AG210200 Rh3BG243600 Rh3CG237500 Rh3DG237100
rosa_wichuraiana	Rw0G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	275
AccII	CGCG	1 cut(s)	260
AccIII	TCCGGA	1 cut(s)	211
AclWI	GGATC	3 cut(s)	12, 51, 1232
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	5 cut(s)	341, 536, 660, 760, 1170
AdeI	CACNNNGTG	1 cut(s)	518
AfaI	GTAC	2 cut(s)	176, 773
AfiI	CCNNNNNNNGG	2 cut(s)	275, 1262
AflII	CTTAAG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	938
AgsI	TTSAA	6 cut(s)	153, 451, 785, 918, 1086, 1170
AjiI	CACGTC	2 cut(s)	889, 1092
AluBI	AGCT	5 cut(s)	355, 393, 536, 625, 1195
AluI	AGCT	5 cut(s)	355, 393, 536, 625, 1195
Alw26I	GTCTC	1 cut(s)	1017
AlwI	GGATC	3 cut(s)	12, 51, 1232
Aor13HI	TCCGGA	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	1014, 1142
ApoI	RAATTY	1 cut(s)	557
Asp700I	GAANNNNTTC	1 cut(s)	874
AspS9I	GGNCC	1 cut(s)	756
AsuHPI	GGTGA	4 cut(s)	156, 614, 1139, 1187
AvaII	GGWCC	1 cut(s)	756
BaeGI	GKGCMC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	977
BbvI	GCAGC	2 cut(s)	1001, 1154
BccI	CCATC	4 cut(s)	256, 269, 952, 969
BciVI	GTATCC	1 cut(s)	644
BclI	TGATCA	2 cut(s)	49, 64
BcoDI	GTCTC	1 cut(s)	1017
BfaI	CTAG	3 cut(s)	810, 911, 1097
BfmI	CTRYAG	1 cut(s)	481
BfrI	CTTAAG	1 cut(s)	350
BfuI	GTATCC	1 cut(s)	644
BisI	GCNGC	2 cut(s)	1015, 1143
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	2 cut(s)	1016, 1144
BmcAI	AGTACT	1 cut(s)	773
Bme18I	GGWCC	1 cut(s)	756
BmgBI	CACGTC	2 cut(s)	889, 1092
BmgT120I	GGNCC	1 cut(s)	756
BmiI	GGNNCC	2 cut(s)	18, 267
BmsI	GCATC	2 cut(s)	607, 1222
BpiI	GAAGAC	1 cut(s)	977
Bpu10I	CCTNAGC	1 cut(s)	705
Bpu1102I	GCTNAGC	1 cut(s)	621
Bsa29I	ATCGAT	1 cut(s)	1080
BsaAI	YACGTR	1 cut(s)	939
BsaBI	GATNNNNATC	1 cut(s)	48
BsaWI	WCCGGW	2 cut(s)	96, 211
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 1262
Bse1I	ACTGG	3 cut(s)	160, 759, 973
Bse8I	GATNNNNATC	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	211
BseCI	ATCGAT	1 cut(s)	1080
BseGI	GGATG	3 cut(s)	472, 574, 961
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	275, 1262
BseMII	CTCAG	5 cut(s)	231, 431, 558, 612, 998
BseNI	ACTGG	3 cut(s)	160, 759, 973
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	1001, 1154
BseYI	CCCAGC	1 cut(s)	831
Bsh1236I	CGCG	1 cut(s)	260
BshVI	ATCGAT	1 cut(s)	1080
BsiSI	CCGG	3 cut(s)	20, 97, 212
BslFI	GGGAC	2 cut(s)	585, 1165
BslI	CCNNNNNNNGG	2 cut(s)	275, 1262
BsmAI	GTCTC	1 cut(s)	1017
BsmFI	GGGAC	2 cut(s)	585, 1165
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp13I	TCCGGA	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	7 cut(s)	4, 43, 49, 64, 1057, 1189, 1224
Bsp1720I	GCTNAGC	1 cut(s)	621
BspCNI	CTCAG	5 cut(s)	232, 430, 559, 613, 999
BspDI	ATCGAT	1 cut(s)	1080
BspEI	TCCGGA	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	260
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	18, 267
BspPI	GGATC	3 cut(s)	12, 51, 1232
BspTI	CTTAAG	1 cut(s)	350
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	3 cut(s)	160, 759, 973
BssMI	GATC	7 cut(s)	4, 43, 49, 64, 1057, 1189, 1224
Bst4CI	ACNGT	5 cut(s)	174, 254, 424, 681, 771
Bst6I	CTCTTC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	939
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	6 cut(s)	240, 417, 567, 621, 705, 1007
BstEII	GGTNACC	1 cut(s)	162
BstF5I	GGATG	3 cut(s)	472, 574, 961
BstFNI	CGCG	1 cut(s)	260
BstKTI	GATC	7 cut(s)	7, 46, 52, 67, 1060, 1192, 1227
BstMAI	GTCTC	1 cut(s)	1017
BstMBI	GATC	7 cut(s)	4, 43, 49, 64, 1057, 1189, 1224
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstNSI	RCATGY	1 cut(s)	695
BstPI	GGTNACC	1 cut(s)	162
BstSFI	CTRYAG	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	382
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	2 cut(s)	1001, 1154
BstV2I	GAAGAC	1 cut(s)	977
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	968
BstYI	RGATCY	1 cut(s)	43
Bsu15I	ATCGAT	1 cut(s)	1080
BsuI	GTATCC	1 cut(s)	644
BsuTUI	ATCGAT	1 cut(s)	1080
BtgZI	GCGATG	1 cut(s)	275
BtrI	CACGTC	2 cut(s)	889, 1092
BtsCI	GGATG	3 cut(s)	472, 574, 961
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	3 cut(s)	170, 429, 692
Cac8I	GCNNGC	1 cut(s)	693
CciI	TCATGA	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	756
ClaI	ATCGAT	1 cut(s)	1080
Csp6I	GTAC	2 cut(s)	175, 772
CviAII	CATG	6 cut(s)	71, 655, 692, 728, 905, 1221
CviQI	GTAC	2 cut(s)	175, 772
DdeI	CTNAG	6 cut(s)	240, 417, 567, 621, 705, 1007
DpnI	GATC	7 cut(s)	6, 45, 51, 66, 1059, 1191, 1226
DpnII	GATC	7 cut(s)	4, 43, 49, 64, 1057, 1189, 1224
DraIII	CACNNNGTG	1 cut(s)	518
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	756
Eco57I	CTGAAG	5 cut(s)	341, 536, 660, 760, 1170
Eco91I	GGTNACC	1 cut(s)	162
EcoO65I	GGTNACC	1 cut(s)	162
FaeI	CATG	6 cut(s)	74, 658, 695, 731, 908, 1224
FalI	AAGNNNNNCTT	4 cut(s)	377, 409, 859, 891
FaqI	GGGAC	2 cut(s)	585, 1165
FatI	CATG	6 cut(s)	70, 654, 691, 727, 904, 1220
FauNDI	CATATG	1 cut(s)	955
FbaI	TGATCA	2 cut(s)	49, 64
Fnu4HI	GCNGC	2 cut(s)	1015, 1143
FokI	GGATG	3 cut(s)	479, 561, 948
Fsp4HI	GCNGC	2 cut(s)	1015, 1143
FspBI	CTAG	3 cut(s)	810, 911, 1097
GluI	GCNGC	2 cut(s)	1015, 1143
GsaI	CCCAGC	1 cut(s)	835
HapII	CCGG	3 cut(s)	20, 97, 212
Hin1II	CATG	6 cut(s)	74, 658, 695, 731, 908, 1224
HindIII	AAGCTT	1 cut(s)	353
HpaII	CCGG	3 cut(s)	20, 97, 212
HphI	GGTGA	4 cut(s)	156, 614, 1139, 1187
Hpy188III	TCNNGA	9 cut(s)	47, 71, 131, 212, 269, 344, 609, 810, 848
HpyAV	CCTTC	2 cut(s)	153, 1194
HpyCH4III	ACNGT	5 cut(s)	174, 254, 424, 681, 771
HpyCH4IV	ACGT	3 cut(s)	888, 938, 1091
HpyCH4V	TGCA	6 cut(s)	542, 685, 731, 996, 1142, 1253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpyF3I	CTNAG	6 cut(s)	240, 417, 567, 621, 705, 1007
HpySE526I	ACGT	3 cut(s)	888, 938, 1091
Hsp92II	CATG	6 cut(s)	74, 658, 695, 731, 908, 1224
Kpn2I	TCCGGA	1 cut(s)	211
Ksp22I	TGATCA	2 cut(s)	49, 64
Kzo9I	GATC	7 cut(s)	4, 43, 49, 64, 1057, 1189, 1224
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	2 cut(s)	1001, 1154
LweI	GCATC	2 cut(s)	607, 1222
MaeI	CTAG	3 cut(s)	810, 911, 1097
MaeII	ACGT	3 cut(s)	888, 938, 1091
MaeIII	GTNAC	7 cut(s)	128, 162, 254, 424, 602, 765, 884
MalI	GATC	7 cut(s)	6, 45, 51, 66, 1059, 1191, 1226
MboI	GATC	7 cut(s)	4, 43, 49, 64, 1057, 1189, 1224
MboII	GAAGA	5 cut(s)	83, 686, 879, 977, 1158
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	6 cut(s)	103, 121, 182, 557, 818, 851
MlyI	GAGTC	6 cut(s)	128, 202, 599, 660, 815, 1189
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	9 cut(s)	180, 280, 319, 436, 482, 562, 1004, 1123, 1223
MroI	TCCGGA	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	874
MseI	TTAA	6 cut(s)	102, 351, 471, 561, 585, 660
MspCI	CTTAAG	1 cut(s)	350
MspI	CCGG	3 cut(s)	20, 97, 212
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	701
NdeI	CATATG	1 cut(s)	955
NdeII	GATC	7 cut(s)	4, 43, 49, 64, 1057, 1189, 1224
NlaIII	CATG	6 cut(s)	74, 658, 695, 731, 908, 1224
NlaIV	GGNNCC	2 cut(s)	18, 267
NmeAIII	GCCGAG	1 cut(s)	4
NmuCI	GTSAC	5 cut(s)	128, 162, 424, 602, 884
NspI	RCATGY	1 cut(s)	695
PaeI	GCATGC	1 cut(s)	695
PagI	TCATGA	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	874
PfeI	GAWTC	6 cut(s)	82, 295, 329, 899, 1082, 1204
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	1016, 1144
PleI	GAGTC	6 cut(s)	128, 202, 599, 659, 814, 1188
PpsI	GAGTC	6 cut(s)	128, 202, 599, 659, 814, 1188
Ppu21I	YACGTR	1 cut(s)	939
PspEI	GGTNACC	1 cut(s)	162
PspFI	CCCAGC	1 cut(s)	831
PspN4I	GGNNCC	2 cut(s)	18, 267
PspPI	GGNCC	1 cut(s)	756
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	2 cut(s)	176, 773
RsaNI	GTAC	2 cut(s)	175, 772
SaqAI	TTAA	6 cut(s)	102, 351, 471, 561, 585, 660
SatI	GCNGC	2 cut(s)	1015, 1143
Sau3AI	GATC	7 cut(s)	4, 43, 49, 64, 1057, 1189, 1224
Sau96I	GGNCC	1 cut(s)	756
ScaI	AGTACT	1 cut(s)	773
SchI	GAGTC	6 cut(s)	128, 202, 599, 660, 815, 1189
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	2 cut(s)	607, 1222
SfcI	CTRYAG	1 cut(s)	481
SinI	GGWCC	1 cut(s)	756
SmlI	CTYRAG	2 cut(s)	11, 350
SmoI	CTYRAG	2 cut(s)	11, 350
SphI	GCATGC	1 cut(s)	695
Sse9I	AATT	6 cut(s)	103, 121, 182, 557, 818, 851
SspMI	CTAG	3 cut(s)	810, 911, 1097
TaaI	ACNGT	5 cut(s)	174, 254, 424, 681, 771
TaiI	ACGT	3 cut(s)	891, 941, 1094
TaqI	TCGA	3 cut(s)	1045, 1080, 1107
TasI	AATT	6 cut(s)	103, 121, 182, 557, 818, 851
TatI	WGTACW	2 cut(s)	174, 771
TfiI	GAWTC	6 cut(s)	82, 295, 329, 899, 1082, 1204
Tru1I	TTAA	6 cut(s)	102, 351, 471, 561, 585, 660
Tru9I	TTAA	6 cut(s)	102, 351, 471, 561, 585, 660
TscAI	CASTG	3 cut(s)	177, 429, 692
TseFI	GTSAC	5 cut(s)	128, 162, 424, 602, 884
TseI	GCWGC	2 cut(s)	1014, 1142
Tsp45I	GTSAC	5 cut(s)	128, 162, 424, 602, 884
TspDTI	ATGAA	4 cut(s)	716, 912, 977, 1251
TspRI	CASTG	3 cut(s)	177, 429, 692
Van91I	CCANNNNNTGG	1 cut(s)	275
Vha464I	CTTAAG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	756
XapI	RAATTY	1 cut(s)	557
XbaI	TCTAGA	1 cut(s)	809
XceI	RCATGY	1 cut(s)	695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276
XmnI	GAANNNNTTC	1 cut(s)	874
XspI	CTAG	3 cut(s)	810, 911, 1097
ZrmI	AGTACT	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.